Ss1.1-Pig4-TMW8025I16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGATGATTCTAAAGATGATGATGAAACTGAAGAAGATAATAATCAAGATGAATATGA TCCAATGGAAGCAGAAGAAGCAGAGGATGAAGAAGATGATCGAGATGAGGAAGAAATAAA CAAACGAGATGACAAAAGAGATATTAATAGGTACTGCAAGGAGAGGCCCTCTAAAGATAA GGAAAAAGAAAAGACTCAGATGATCACAATTAACAGGGATCTGTTAATGGCATTTGTTTA TTTTGATCAAAGCCATTGTGGTTACCTTCTTGAAAAGGATTTGGAGGAAATACTTTATAC CCTTGGACTACATCTTTCTCGGGCTCAGGTAAAGAAACTTCTTAATAAAGTAGTGCTCCG TGAGTCTTGCTTTTACCGGAAATTAACAGATACCTCAAAAGATGAGGAAAACCATGAAGA ATCTGAAGCATTGCAGGAAGATATGCTAGGAAACAGGTTGTTACTTCCAACACCAACAGT AAAACAGGAATCAAAGGATGTGGAAGAAAATGTTGGCCTTATTGTGTATAATGGTGCTAT GGTAGATGTAGGAAGCCTCTTACAAAAATTGGAGAAGAGTGAAAAGGTACGAGCTGAAGT AGAACAGAAGCTACAGTTACTTGAAGAAAAGACGGATGAAGATGAGAAAACCATATTAAA TTTGGAGAATTCCAACAAAAACCTCTCTGGTGAACTCAGAGAAGTTAAAAAGGACCTTAG TCAGTTACAGGAGAACTTAAAGACTTCAGAAAACATGAATTTGCAATTTGAAAACCAACT GAATAAGACAATCAGAAACTTATCCACAGTAATGGATGAAATCCACACTGTTCTTAAGAA GGATAATGTGAAGAATGAAGATAAAGATCAGAAATCCAAGGAGAATGGTGCAAGTGTATG ATAAAATTTGTGTAGTGGTGCAGAATGGTGATAAATAATGTAATATATAAAATCATGATA CAAGAATGTTTGAAAGTGATGCATGTTTGATTTTAGTAGTATAAATATCTGTTAGTTCAA ATGATGTATAAAGTTTTATGAATGTGAGAGTCTTTGCTTTTGAAAATTGCTTGTAATTCC TGGCATCCAAATTATTAAACACTCCTTGAGTGAAATAATTTTGCATTGCAAAATGTTTTA GGATGAACTTTGTTATAGTTTTAACCCCAATAAAGTTCATCAATTTAATTGACAGTAGTA TTTAATCACAAATGACTTTTATTAAAAACCTAGAAAGTTATAATTTTATTTATAGACATT ATCATTATTAGTTTTAAAGTATTTTTACCCTTTTCAAGTTTAAGTAAGAATCATAAAATA GCATGCTGCTTAATTTTTGCAAGTTTTTTGGATACTTTTTTAATTGTCCTAAAATCTTAG TTATCAGTATCTAAGAAACACTTATTAAAAATTTTGAAGTTCCCTCATGGTGCAGCAGGT TAAGGATCTGTTGTTGTCACTGCAGGATACTTGATTTGCTGCTGTGGCATGGGTTTGATC CTTGACCCAGGAACTTCCACGTGCTGAGGGCACAGCCAAAAAAATAAAAAATTAACTGAT TCAAAAGACAGTACATCAGAAACTAAGACTATAATAGGTAGTTGTCATTGTTAGTATATA TGTTAGTCTTTACATAAAACATAGTTTTGATGTTAATGTTAACTGCCTTCAATTAATTGT TCTTATTCCCCAGAATAGTACCTATATTACTTTTAATTTTGAGGGTTTTTTAAAAAAATG CAGTATATGTCAAATGTACAGTTTAGTACCAAGCCGGTAGATGTCAGTATGATGCCTTAA ATTAAGCCTTCTTTAATTAAAAATATTTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGATGATTCTAAAGATGATGATGAAACTGAAGAAGATAATAATCAAGATGAATATGA TCCAATGGAAGCAGAAGAAGCAGAGGATGAAGAAGATGATCGAGATGAGGAAGAAATAAA CAAACGAGATGACAAAAGAGATATTAATAGGTACTGCAAGGAGAGGCCCTCTAAAGATAA GGAAAAAGAAAAGACTCAGATGATCACAATTAACAGGGATCTGTTAATGGCATTTGTTTA TTTTGATCAAAGCCATTGTGGTTACCTTCTTGAAAAGGATTTGGAGGAAATACTTTATAC CCTTGGACTACATCTTTCTCGGGCTCAGGTAAAGAAACTTCTTAATAAAGTAGTGCTCCG TGAGTCTTGCTTTTACCGGAAATTAACAGATACCTCAAAAGATGAGGAAAACCATGAAGA ATCTGAAGCATTGCAGGAAGATATGCTAGGAAACAGGTTGTTACTTCCAACACCAACAGT AAAACAGGAATCAAAGGATGTGGAAGAAAATGTTGGCCTTATTGTGTATAATGGTGCTAT GGTAGATGTAGGAAGCCTCTTACAAAAATTGGAGAAGAGTGAAAAGGTACGAGCTGAAGT AGAACAGAAGCTACAGTTACTTGAAGAAAAGACGGATGAAGATGAGAAAACCATATTAAA TTTGGAGAATTCCAACAAAAACCTCTCTGGTGAACTCAGAGAAGTTAAAAAGGACCTTAG TCAGTTACAGGAGAACTTAAAGACTTCAGAAAACATGAATTTGCAATTTGAAAACCAACT GAATAAGACAATCAGAAACTTATCCACAGTAATGGATGAAATCCACACTGTTCTTAAGAA GGATAATGTGAAGAATGAAGATAAAGATCAGAAATCCAAGGAGAATGGTGCAAGTGTATG ATAAAATTTGTGTAGTGGTGCAGAATGGTGATAAATAATGTAATATATAAAATCATGATA CAAGAATGTTTGAAAGTGATGCATGTTTGATTTTAGTAGTATAAATATCTGTTAGTTCAA ATGATGTATAAAGTTTTATGAATGTGAGAGTCTTTGCTTTTGAAAATTGCTTGTAATTCC TGGCATCCAAATTATTAAACACTCCTTGAGTGAAATAATTTTGCATTGCAAAATGTTTTA GGATGAACTTTGTTATAGTTTTAACCCCAATAAAGTTCATCAATTTAATTGACAGTAGTA TTTAATCACAAATGACTTTTATTAAAAACCTAGAAAGTTATAATTTTATTTATAGACATT ATCATTATTAGTTTTAAAGTATTTTTACCCTTTTCAAGTTTAAGTAAGAATCATAAAATA GCATGCTGCTTAATTTTTGCAAGTTTTTTGGATACTTTTTTAATTGTCCTAAAATCTTAG TTATCAGTATCTAAGAAACACTTATTAAAAATTTTGAAGTTCCCTCATGGTGCAGCAGGT TAAGGATCTGTTGTTGTCACTGCAGGATACTTGATTTGCTGCTGTGGCATGGGTTTGATC CTTGACCCAGGAACTTCCACGTGCTGAGGGCACAGCCAAAAAAATAAAAAATTAACTGAT TCAAAAGACAGTACATCAGAAACTAAGACTATAATAGGTAGTTGTCATTGTTAGTATATA TGTTAGTCTTTACATAAAACATAGTTTTGATGTTAATGTTAACTGCCTTCAATTAATTGT TCTTATTCCCCAGAATAGTACCTATATTACTTTTAATTTTGAGGGTTTTTTAAAAAAATG CAGTATATGTCAAATGTACAGTTTAGTACCAAGCCGGTAGATGTCAGTATGATGCCTTAA ATTAAGCCTTCTTTAATTAAAAATATTTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 670-789, - strand, RNAz p=0.671882 | |
| 1087-1206, - strand, RNAz p=0.982265 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 670-789, - strand, RNAz p=0.671882 | |
| 1087-1206, - strand, RNAz p=0.982265 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 180-332, gnl|bosTau2|chr28 (16586610-16586458) | |
| 180-332, gnl|canFam2|chr4 (23177268-23177426) | |
| 180-332, gnl|danRer3|chr13 (16250886-16251044) | |
| 180-332, gnl|dasNov1|scaffold_89403 (6750-6598) | |
| 180-332, gnl|echTel1|scaffold_313135 (7017-6859) | |
| 180-332, gnl|fr1|chrUn (165404952-165404800) | |
| 180-332, gnl|galGal2|chr6 (10052396-10052554) | |
| 180-332, gnl|hg17|chr10 (70216308-70216466) | |
| 180-332, gnl|Hg17|chr10 (70216307-70216459) | |
| 180-332, gnl|loxAfr1|scaffold_2417 (104906-105065) | |
| 180-332, gnl|mm7|chr10 (62269484-62269326) | |
| 180-332, gnl|Mm7|chr10 (62269483-62269331) | |
| 180-332, gnl|monDom2|scaffold_67 (9761827-9761984) | |
| 180-332, gnl|oryCun1|scaffold_141461 (2749-2591) | |
| 180-332, gnl|panTro1|chr8_random (37798828-37798670) | |
| 180-332, gnl|rheMac2|chr9 (68448285-68448127) | |
| 180-332, gnl|rn3|chr20 (30016789-30016631) | |
| 180-332, gnl|tetNig1|chr17 (5504179-5504330) | |
| 180-332, gnl|xenTro1|scaffold_228 (570361-570210) | |
| 631-845, gnl|bosTau2|chr28 (16584516-16584302) | |
| 631-845, gnl|Hg17|chr10 (70219468-70219682) | |
| 631-845, gnl|Mm7|chr10 (62264261-62264047) | |
| 930-1414, gnl|bosTau2|chr28 (16583894-16583410) | |
| 930-1414, gnl|Hg17|chr10 (70221060-70221545) | |
| 930-1414, gnl|Mm7|chr10 (62263512-62262978) | |
| 1545-1836, gnl|bosTau2|chr28 (16583418-16583153) | |
| 1545-1836, gnl|Hg17|chr10 (70221537-70222139) | |
| 1545-1836, gnl|Mm7|chr10 (62262992-62262717) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 180-332, gnl|bosTau2|chr28 (16586610-16586458) | |
| 180-332, gnl|canFam2|chr4 (23177268-23177426) | |
| 180-332, gnl|danRer3|chr13 (16250886-16251044) | |
| 180-332, gnl|dasNov1|scaffold_89403 (6750-6598) | |
| 180-332, gnl|echTel1|scaffold_313135 (7017-6859) | |
| 180-332, gnl|fr1|chrUn (165404952-165404800) | |
| 180-332, gnl|galGal2|chr6 (10052396-10052554) | |
| 180-332, gnl|hg17|chr10 (70216308-70216466) | |
| 180-332, gnl|Hg17|chr10 (70216307-70216459) | |
| 180-332, gnl|loxAfr1|scaffold_2417 (104906-105065) | |
| 180-332, gnl|mm7|chr10 (62269484-62269326) | |
| 180-332, gnl|Mm7|chr10 (62269483-62269331) | |
| 180-332, gnl|monDom2|scaffold_67 (9761827-9761984) | |
| 180-332, gnl|oryCun1|scaffold_141461 (2749-2591) | |
| 180-332, gnl|panTro1|chr8_random (37798828-37798670) | |
| 180-332, gnl|rheMac2|chr9 (68448285-68448127) | |
| 180-332, gnl|rn3|chr20 (30016789-30016631) | |
| 180-332, gnl|tetNig1|chr17 (5504179-5504330) | |
| 180-332, gnl|xenTro1|scaffold_228 (570361-570210) | |
| 631-845, gnl|bosTau2|chr28 (16584516-16584302) | |
| 631-845, gnl|Hg17|chr10 (70219468-70219682) | |
| 631-845, gnl|Mm7|chr10 (62264261-62264047) | |
| 930-1414, gnl|bosTau2|chr28 (16583894-16583410) | |
| 930-1414, gnl|Hg17|chr10 (70221060-70221545) | |
| 930-1414, gnl|Mm7|chr10 (62263512-62262978) | |
| 1545-1836, gnl|bosTau2|chr28 (16583418-16583153) | |
| 1545-1836, gnl|Hg17|chr10 (70221537-70222139) | |
| 1545-1836, gnl|Mm7|chr10 (62262992-62262717) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| liv (0.585137) | |
| amn (0.417711) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.585137) | |
| amn (0.417711) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |