Ss1.1-Pig4-TMW8025I23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGGTCTGCCGGGTGGCCGGCACCGGCAGTCGAGTGCTGCTGCGCACCTGCCGCTCGC AGCCGGCCTTGCTGAGGTCTCCTGCGTTGCGGGGCACCGCCACCTATGCCCAAGCTCTCC AGAGCGTGCCAGAGACGCAGGTCAGCCAGCTGGACAACGGGCTGAGAGTGGCCTCGGAGC AGTCCTCCCAGCCTACCTGCACGGTGGGTGTGTGGATTGACGCGGGCAGCCGTTACGAGA ATGAGAAGAATAATGGGGCAGGCTACTTTGTGGAGCATCTGGCTTTCAAGGGAACAAAGA ATCGGCCTGGCAGTGCCTTGGAGAAGGAGGTGGAGAGCATGGGGGCCCATCTTAATGCCT ACAGCACCCGGGAGCACACGGCTTACTACATCAAAGCGCTATCCAAGGACCTGCCAAAAG CTGTGGAACTCCTGGCCGACATTGTGCAGAACTGCAGCCTAGAAGACTCCCAGATTGAGA AGGAGCGTGATGTGATCCTACAGGAGCTGCAGGAGAATGACTCGTCTATGCGGGACGTGG TCTTTGACTACCTGCATGCCACGGCATTTCAGGGCACGCCTTTAGCTCAGTCCGTGGAGG GGCCCAGTGAGAATGTCAGGAAGCTGTCTCGGGCAGACTTGACAGAGTATGTCAGCCAGC ATTACAAGGCCCCTCGAATGGTGCTTGCAGCAGCTGGAGGGGTGGAGCACCGGCAGCTGC TGGACCTCGCCCAGAAGCACTTCAGCAGCCTCTCTGGGACATACGTTGAGGACGCTGTGC CTGCTTTTACTCCGTGCCGCTTCACCGGCAGTGAGATCCGCCACCGTGACGATGCCCTCC CTTTGGCCCATGTGGCCATTGCAGTGGAGGGGCCCGGCTGGGCCAACCCGGACAATGTGC CCCTCCAGGTGGCCAATGCCATCATCGGCCACTATGACTCCACTTACGGTGGTGGCACAC ACATGTCGAGCACACTGGCCTCAGTTGCTGCTACCAGAAAGCTGTGCCAGAGTTTCCAGA CTTTCAACATCTGCTACGCAGAGACTGGTTTGCTTGGCGCTCACTTTGTCTGTGACAACA TGAGCATTGATGACATGATGTTCTTCCTGCAGGGCCAGTGGATGCGCCTGTGCACCAGTG CCACAGAGAGTGAGGTGGTCCGGGGCAAAAACATCCTCAGAAATGCCCTGGTGTCTCATC TGGATGGCACCACTCCTGTGTGTGAGGACATTGGACGCAGTCTCCTGACCTATGGGCGCC GCATCCCCCTAGCTGAGTGGGAAAGCCGGATTGCGGAGGTGGATGCCAGTGTGGTGCGTG AGGTCTGCTCCAAGTACTTCTATGACCAGTGTCCAGCAGTGGCTGGACTGGGCCCCATTG AGCAGCTTCCAGATTATAACCGGATCCGCAGCGGCATGTTCTGGCTGCGCTTCTAGCCAA GAAGCCTGTGCAGACAAGAGGGTGGGGCCGGGGTTCGTGGTCCCCCCACCACAAACGTAC CACCTCAGCTCTTCAAACCTGTGCTACACGTTACCACCAATAAAGTCTTGTTTGGAGAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGGTCTGCCGGGTGGCCGGCACCGGCAGTCGAGTGCTGCTGCGCACCTGCCGCTCGC AGCCGGCCTTGCTGAGGTCTCCTGCGTTGCGGGGCACCGCCACCTATGCCCAAGCTCTCC AGAGCGTGCCAGAGACGCAGGTCAGCCAGCTGGACAACGGGCTGAGAGTGGCCTCGGAGC AGTCCTCCCAGCCTACCTGCACGGTGGGTGTGTGGATTGACGCGGGCAGCCGTTACGAGA ATGAGAAGAATAATGGGGCAGGCTACTTTGTGGAGCATCTGGCTTTCAAGGGAACAAAGA ATCGGCCTGGCAGTGCCTTGGAGAAGGAGGTGGAGAGCATGGGGGCCCATCTTAATGCCT ACAGCACCCGGGAGCACACGGCTTACTACATCAAAGCGCTATCCAAGGACCTGCCAAAAG CTGTGGAACTCCTGGCCGACATTGTGCAGAACTGCAGCCTAGAAGACTCCCAGATTGAGA AGGAGCGTGATGTGATCCTACAGGAGCTGCAGGAGAATGACTCGTCTATGCGGGACGTGG TCTTTGACTACCTGCATGCCACGGCATTTCAGGGCACGCCTTTAGCTCAGTCCGTGGAGG GGCCCAGTGAGAATGTCAGGAAGCTGTCTCGGGCAGACTTGACAGAGTATGTCAGCCAGC ATTACAAGGCCCCTCGAATGGTGCTTGCAGCAGCTGGAGGGGTGGAGCACCGGCAGCTGC TGGACCTCGCCCAGAAGCACTTCAGCAGCCTCTCTGGGACATACGTTGAGGACGCTGTGC CTGCTTTTACTCCGTGCCGCTTCACCGGCAGTGAGATCCGCCACCGTGACGATGCCCTCC CTTTGGCCCATGTGGCCATTGCAGTGGAGGGGCCCGGCTGGGCCAACCCGGACAATGTGC CCCTCCAGGTGGCCAATGCCATCATCGGCCACTATGACTCCACTTACGGTGGTGGCACAC ACATGTCGAGCACACTGGCCTCAGTTGCTGCTACCAGAAAGCTGTGCCAGAGTTTCCAGA CTTTCAACATCTGCTACGCAGAGACTGGTTTGCTTGGCGCTCACTTTGTCTGTGACAACA TGAGCATTGATGACATGATGTTCTTCCTGCAGGGCCAGTGGATGCGCCTGTGCACCAGTG CCACAGAGAGTGAGGTGGTCCGGGGCAAAAACATCCTCAGAAATGCCCTGGTGTCTCATC TGGATGGCACCACTCCTGTGTGTGAGGACATTGGACGCAGTCTCCTGACCTATGGGCGCC GCATCCCCCTAGCTGAGTGGGAAAGCCGGATTGCGGAGGTGGATGCCAGTGTGGTGCGTG AGGTCTGCTCCAAGTACTTCTATGACCAGTGTCCAGCAGTGGCTGGACTGGGCCCCATTG AGCAGCTTCCAGATTATAACCGGATCCGCAGCGGCATGTTCTGGCTGCGCTTCTAGCCAA GAAGCCTGTGCAGACAAGAGGGTGGGGCCGGGGTTCGTGGTCCCCCCACCACAAACGTAC CACCTCAGCTCTTCAAACCTGTGCTACACGTTACCACCAATAAAGTCTTGTTTGGAGAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 419-537, + strand, RNAz p=0.506806 | |
| 814-955, - strand, RNAz p=0.978138 | |
| 1019-1121, + strand, RNAz p=0.627383 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 419-537, + strand, RNAz p=0.506806 | |
| 814-955, - strand, RNAz p=0.978138 | |
| 1019-1121, + strand, RNAz p=0.627383 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 60-206, gnl|bosTau2|chr22 (39184166-39184020) | |
| 60-206, gnl|Hg17|chr3 (48621742-48621596) | |
| 60-206, gnl|Mm7|chr9 (108646840-108646986) | |
| 419-620, gnl|bosTau2|chr22 (39180859-39180658) | |
| 419-620, gnl|canFam2|chr20 (43510953-43510738) | |
| 419-620, gnl|danRer3|chrUn (21092750-21092548) | |
| 419-620, gnl|dasNov1|scaffold_93121 (6948-7166) | |
| 419-620, gnl|echTel1|scaffold_285817 (42101-42317) | |
| 419-620, gnl|fr1|chrUn (112439982-112440199) | |
| 419-620, gnl|galGal2|chr12 (9109323-9109116) | |
| 419-620, gnl|hg17|chr3 (48616665-48616883) | |
| 419-620, gnl|Hg17|chr3 (48616870-48616669) | |
| 419-620, gnl|loxAfr1|scaffold_32049 (16328-16546) | |
| 419-620, gnl|mm7|chr9 (108654693-108654484) | |
| 419-620, gnl|Mm7|chr9 (108654486-108654687) | |
| 419-620, gnl|monDom2|scaffold_5 (77237203-77236969) | |
| 419-620, gnl|oryCun1|scaffold_187460 (9401-9619) | |
| 419-620, gnl|panTro1|chr2 (50103401-50103619) | |
| 419-620, gnl|rheMac2|chr2 (87871829-87871611) | |
| 419-620, gnl|rn3|chr8 (113981698-113981480) | |
| 419-620, gnl|tetNig1|chr11 (1023645-1023859) | |
| 419-620, gnl|xenTro1|scaffold_1195 (104806-104588) | |
| 814-955, gnl|bosTau2|chr22 (39177773-39177632) | |
| 814-955, gnl|Hg17|chr3 (48613557-48613416) | |
| 814-955, gnl|Mm7|chr9 (108657597-108657738) | |
| 960-1121, gnl|bosTau2|chr22 (39177457-39177296) | |
| 960-1121, gnl|canFam2|chr20 (43513333-43513107) | |
| 960-1121, gnl|danRer3|chrUn (21094605-21094386) | |
| 960-1121, gnl|dasNov1|scaffold_93121 (3133-3355) | |
| 960-1121, gnl|echTel1|scaffold_285817 (39942-40153) | |
| 960-1121, gnl|fr1|chrUn (112438871-112439050) | |
| 960-1121, gnl|galGal2|chr12 (9111676-9111473) | |
| 960-1121, gnl|hg17|chr3 (48613100-48613327) | |
| 960-1121, gnl|Hg17|chr3 (48613277-48613116) | |
| 960-1121, gnl|loxAfr1|scaffold_32049 (13405-13632) | |
| 960-1121, gnl|mm7|chr9 (108658040-108657825) | |
| 960-1121, gnl|Mm7|chr9 (108657861-108658022) | |
| 960-1121, gnl|monDom2|scaffold_5 (77242036-77241803) | |
| 960-1121, gnl|oryCun1|scaffold_187460 (5180-5396) | |
| 960-1121, gnl|panTro1|chr2 (50099767-50099994) | |
| 960-1121, gnl|rheMac2|chr2 (87875692-87875465) | |
| 960-1121, gnl|rn3|chr8 (113984687-113984463) | |
| 960-1121, gnl|tetNig1|chr11 (1022698-1022890) | |
| 960-1121, gnl|xenTro1|scaffold_1195 (107688-107499) | |
| 1371-1559, gnl|bosTau2|chr22 (39175922-39175731) | |
| 1371-1559, gnl|Hg17|chr3 (48611630-48611439) | |
| 1371-1559, gnl|Mm7|chr9 (108659697-108659886) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-206, gnl|bosTau2|chr22 (39184166-39184020) | |
| 60-206, gnl|Hg17|chr3 (48621742-48621596) | |
| 60-206, gnl|Mm7|chr9 (108646840-108646986) | |
| 419-620, gnl|bosTau2|chr22 (39180859-39180658) | |
| 419-620, gnl|canFam2|chr20 (43510953-43510738) | |
| 419-620, gnl|danRer3|chrUn (21092750-21092548) | |
| 419-620, gnl|dasNov1|scaffold_93121 (6948-7166) | |
| 419-620, gnl|echTel1|scaffold_285817 (42101-42317) | |
| 419-620, gnl|fr1|chrUn (112439982-112440199) | |
| 419-620, gnl|galGal2|chr12 (9109323-9109116) | |
| 419-620, gnl|hg17|chr3 (48616665-48616883) | |
| 419-620, gnl|Hg17|chr3 (48616870-48616669) | |
| 419-620, gnl|loxAfr1|scaffold_32049 (16328-16546) | |
| 419-620, gnl|mm7|chr9 (108654693-108654484) | |
| 419-620, gnl|Mm7|chr9 (108654486-108654687) | |
| 419-620, gnl|monDom2|scaffold_5 (77237203-77236969) | |
| 419-620, gnl|oryCun1|scaffold_187460 (9401-9619) | |
| 419-620, gnl|panTro1|chr2 (50103401-50103619) | |
| 419-620, gnl|rheMac2|chr2 (87871829-87871611) | |
| 419-620, gnl|rn3|chr8 (113981698-113981480) | |
| 419-620, gnl|tetNig1|chr11 (1023645-1023859) | |
| 419-620, gnl|xenTro1|scaffold_1195 (104806-104588) | |
| 814-955, gnl|bosTau2|chr22 (39177773-39177632) | |
| 814-955, gnl|Hg17|chr3 (48613557-48613416) | |
| 814-955, gnl|Mm7|chr9 (108657597-108657738) | |
| 960-1121, gnl|bosTau2|chr22 (39177457-39177296) | |
| 960-1121, gnl|canFam2|chr20 (43513333-43513107) | |
| 960-1121, gnl|danRer3|chrUn (21094605-21094386) | |
| 960-1121, gnl|dasNov1|scaffold_93121 (3133-3355) | |
| 960-1121, gnl|echTel1|scaffold_285817 (39942-40153) | |
| 960-1121, gnl|fr1|chrUn (112438871-112439050) | |
| 960-1121, gnl|galGal2|chr12 (9111676-9111473) | |
| 960-1121, gnl|hg17|chr3 (48613100-48613327) | |
| 960-1121, gnl|Hg17|chr3 (48613277-48613116) | |
| 960-1121, gnl|loxAfr1|scaffold_32049 (13405-13632) | |
| 960-1121, gnl|mm7|chr9 (108658040-108657825) | |
| 960-1121, gnl|Mm7|chr9 (108657861-108658022) | |
| 960-1121, gnl|monDom2|scaffold_5 (77242036-77241803) | |
| 960-1121, gnl|oryCun1|scaffold_187460 (5180-5396) | |
| 960-1121, gnl|panTro1|chr2 (50099767-50099994) | |
| 960-1121, gnl|rheMac2|chr2 (87875692-87875465) | |
| 960-1121, gnl|rn3|chr8 (113984687-113984463) | |
| 960-1121, gnl|tetNig1|chr11 (1022698-1022890) | |
| 960-1121, gnl|xenTro1|scaffold_1195 (107688-107499) | |
| 1371-1559, gnl|bosTau2|chr22 (39175922-39175731) | |
| 1371-1559, gnl|Hg17|chr3 (48611630-48611439) | |
| 1371-1559, gnl|Mm7|chr9 (108659697-108659886) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| col (1.17005) | |
| hlv (1.11405) | |
| ton (0.877501) | |
| cov (0.660764) | |
| mas (0.630915) | |
| nlu (0.575043) | |
| nco (0.485201) | |
| nms (0.427716) | |
| fcc (0.39557) | |
| eje (0.395335) | |
| ill (0.351185) | |
| med (0.348756) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cki (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (1.17005) | |
| hlv (1.11405) | |
| ton (0.877501) | |
| cov (0.660764) | |
| mas (0.630915) | |
| nlu (0.575043) | |
| nco (0.485201) | |
| nms (0.427716) | |
| fcc (0.39557) | |
| eje (0.395335) | |
| ill (0.351185) | |
| med (0.348756) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| cte (0.29274) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nep (0.183925) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cki (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| ldo (0.0970026) |