Ss1.1-Pig4-TMW8025I24.5
|
TGGATATCCACAAGCTTATGGCCAGTGGGGCCAGTGGTATGGAAATGCACAGCAAATTGG
CCAGTATATGCCTAATGGTTGGCAAGTACCTGCATATGGAATGTATGGCCAGGCGTGGAA
CCAGCAGGGATTTAATCAGACACAGTCTTCTGCACCGTGGATGGGACCAAATTACGGAGT
ACAGCCACCTCCAGGACAGAATGGCAGCATGATGCCTAGTCAGCCTGCAGGGTATCGAGT
GGCAGGGTATGAAACCCAGTGAAAGAGGACTCTAGAAGCTAAAGCCAGTGGCTTGAGGCT
ACAGGGAGCGTAGTAGAGCTGTTGTTTACTTAAAGATTTATCAAATCAGTCAGTGCAAAT
GTCAGATACAATGTATTTATTTAAAAGATTCATTTTTTAATCATGAAATTACTTATCATC
CGCATTGTTTTAAAGAGAAACAAGATGCTGGATGTCTGCCAATTTTTGCCTTCATTACCT
TTTTTGATAAAGTTTCTCAGATCCTTGTTTCAAATACAAATGCAGGGATTGCTGCCACTT
TTTTAAAATTGAGGCAGAAAATTGCACAATGTTGAACTTTTTTCCACTGAAGTAGCGTGC
AGTTCTAGTTTGCATTCCTGATATGATTTTAAACATGTAATATAAAGATGTTAAAAAAAA
AAGAAAAACCAAAACTGTGCAGAGTCTAGAAGTTTGTTGTAATCTTCAGCTTATGCACAA
TTGTGTTTTAGGTTTTTTTTTTTGAAAAAGGCTTTGTTTGAACTGTCCCATCTCCACCGT
TTTCCCTCTGGGGTTTTTAAATATAAATTATTAGTTTACATCACTTTTGTATCTACATTT
TTTCACAAATTTGTCTTGCCTTATTAAAGTTCTGTAACATACTTAAATGGAAAAAAATGA
TGTTCATTTAGATTGAAAACTTTTCTCAGATGGATTGATAATTGCATTCATCTTGTGTTT
TATATGAGAAGGTGCCTCAAGAATTCCCTGTTGAATTTGTTTAAAAGAGTTTTTATCTTC
TGTGATAAACTTCGCTATGTACCAGGAAATATAAAAACAAAAATTTGTTACTAAAGAAAA
TCTCTGACATGTGATAAGTTCTTATGAACCCCTGTTAATTTCATGTGTCAAATTCTACAT
TAACATGTATTATTTCATTATGTAAAATGTTTTAGCAATTTAATATTTTGCACAGTTAGT
AAACTTTGTATGTCATTTCCTCCTTAAAGGCATCATGCAGAGTCCACAGATTTATAAGGT
TTCGTTTGCATGTGAATATCAAATACACACTTTGGTAGTCTTTGAATACAAAGTCATCTG
CTCTTGTTTTTCAAGAATTTTGAGACACAAAGTTGTATGTAAAGGAAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TGGATATCCACAAGCTTATGGCCAGTGGGGCCAGTGGTATGGAAATGCACAGCAAATTGG
CCAGTATATGCCTAATGGTTGGCAAGTACCTGCATATGGAATGTATGGCCAGGCGTGGAA
CCAGCAGGGATTTAATCAGACACAGTCTTCTGCACCGTGGATGGGACCAAATTACGGAGT
ACAGCCACCTCCAGGACAGAATGGCAGCATGATGCCTAGTCAGCCTGCAGGGTATCGAGT
GGCAGGGTATGAAACCCAGTGAAAGAGGACTCTAGAAGCTAAAGCCAGTGGCTTGAGGCT
ACAGGGAGCGTAGTAGAGCTGTTGTTTACTTAAAGATTTATCAAATCAGTCAGTGCAAAT
GTCAGATACAATGTATTTATTTAAAAGATTCATTTTTTAATCATGAAATTACTTATCATC
CGCATTGTTTTAAAGAGAAACAAGATGCTGGATGTCTGCCAATTTTTGCCTTCATTACCT
TTTTTGATAAAGTTTCTCAGATCCTTGTTTCAAATACAAATGCAGGGATTGCTGCCACTT
TTTTAAAATTGAGGCAGAAAATTGCACAATGTTGAACTTTTTTCCACTGAAGTAGCGTGC
AGTTCTAGTTTGCATTCCTGATATGATTTTAAACATGTAATATAAAGATGTTAAAAAAAA
AAGAAAAACCAAAACTGTGCAGAGTCTAGAAGTTTGTTGTAATCTTCAGCTTATGCACAA
TTGTGTTTTAGGTTTTTTTTTTTGAAAAAGGCTTTGTTTGAACTGTCCCATCTCCACCGT
TTTCCCTCTGGGGTTTTTAAATATAAATTATTAGTTTACATCACTTTTGTATCTACATTT
TTTCACAAATTTGTCTTGCCTTATTAAAGTTCTGTAACATACTTAAATGGAAAAAAATGA
TGTTCATTTAGATTGAAAACTTTTCTCAGATGGATTGATAATTGCATTCATCTTGTGTTT
TATATGAGAAGGTGCCTCAAGAATTCCCTGTTGAATTTGTTTAAAAGAGTTTTTATCTTC
TGTGATAAACTTCGCTATGTACCAGGAAATATAAAAACAAAAATTTGTTACTAAAGAAAA
TCTCTGACATGTGATAAGTTCTTATGAACCCCTGTTAATTTCATGTGTCAAATTCTACAT
TAACATGTATTATTTCATTATGTAAAATGTTTTAGCAATTTAATATTTTGCACAGTTAGT
AAACTTTGTATGTCATTTCCTCCTTAAAGGCATCATGCAGAGTCCACAGATTTATAAGGT
TTCGTTTGCATGTGAATATCAAATACACACTTTGGTAGTCTTTGAATACAAAGTCATCTG
CTCTTGTTTTTCAAGAATTTTGAGACACAAAGTTGTATGTAAAGGAAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-144, gnl|bosTau2|chr11 (49502342-49502199) |
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1-144, gnl|canFam2|chr10 (71927401-71927544) |
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1-144, gnl|danRer3|chr5 (63203258-63203401) |
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1-144, gnl|dasNov1|scaffold_19886 (13171-13028) |
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1-144, gnl|echTel1|scaffold_305956 (64004-63866) |
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1-144, gnl|fr1|chrUn (58640390-58640514) |
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1-144, gnl|galGal2|chrUn (141314623-141314487) |
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1-144, gnl|hg17|chr2 (70353108-70353251) |
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1-144, gnl|Hg17|chr2 (70353266-70353123) |
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1-144, gnl|loxAfr1|scaffold_221924 (311-168) |
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1-144, gnl|mm7|chr6 (86502930-86502787) |
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1-144, gnl|Mm7|chr6 (86502770-86502913) |
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1-144, gnl|monDom2|scaffold_1 (93751275-93751418) |
|
1-144, gnl|oryCun1|scaffold_204571 (45128-44976) |
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1-144, gnl|panTro1|chr12 (72664955-72665098) |
|
1-144, gnl|rheMac2|chr13 (70494593-70494736) |
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1-144, gnl|rn3|chr4 (120859013-120858870) |
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1-144, gnl|tetNig1|chrUn_random (1757447-1757324) |
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1-144, gnl|xenTro1|scaffold_110 (1697673-1697531) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-144, gnl|bosTau2|chr11 (49502342-49502199) |
|
1-144, gnl|canFam2|chr10 (71927401-71927544) |
|
1-144, gnl|danRer3|chr5 (63203258-63203401) |
|
1-144, gnl|dasNov1|scaffold_19886 (13171-13028) |
|
1-144, gnl|echTel1|scaffold_305956 (64004-63866) |
|
1-144, gnl|fr1|chrUn (58640390-58640514) |
|
1-144, gnl|galGal2|chrUn (141314623-141314487) |
|
1-144, gnl|hg17|chr2 (70353108-70353251) |
|
1-144, gnl|Hg17|chr2 (70353266-70353123) |
|
1-144, gnl|loxAfr1|scaffold_221924 (311-168) |
|
1-144, gnl|mm7|chr6 (86502930-86502787) |
|
1-144, gnl|Mm7|chr6 (86502770-86502913) |
|
1-144, gnl|monDom2|scaffold_1 (93751275-93751418) |
|
1-144, gnl|oryCun1|scaffold_204571 (45128-44976) |
|
1-144, gnl|panTro1|chr12 (72664955-72665098) |
|
1-144, gnl|rheMac2|chr13 (70494593-70494736) |
|
1-144, gnl|rn3|chr4 (120859013-120858870) |
|
1-144, gnl|tetNig1|chrUn_random (1757447-1757324) |
|
1-144, gnl|xenTro1|scaffold_110 (1697673-1697531) |
|
nms (0.427716) |
|
sin (0.349895) |
|
liv (0.292569) |
|
fce (0.271592) |
|
col (0.195008) |
|
ill (0.175593) |
|
lin (0.145603) |
|
spl (0.143184) |
|
ste (0.135208) |
|
kid (0.129735) |
|
ova (0.129132) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
nms (0.427716) |
|
sin (0.349895) |
|
liv (0.292569) |
|
fce (0.271592) |
|
col (0.195008) |
|
ill (0.175593) |
|
lin (0.145603) |
|
spl (0.143184) |
|
ste (0.135208) |
|
kid (0.129735) |
|
ova (0.129132) |
|
eru (0.120048) |
|
pgl (0.118483) |
