Ss1.1-Pig4-TMW8025J07.5
|
GGGTTCTGCTCTCCAGGCGCCAGGCTAAGAAGACCGCGTCCCCTGCCCCTGCTTGGACGC
TCTGGCCCCCGCGAACTCCAGGTGAACGAAACGGACCTTAACTCAGCAGGGGCACGGCCA
CCACCGACTCCCACCCCCACGCTCGGAGCGGGCGGCGGAGGGGGCCGAGGAGGAAGGGGC
GGGGGCTGCGGCTCCGGCTGCAGGAAGCAGAAGCCGGTCGCGGCGTCGGTGCTGCGCGTT
CCGCTGCGATGAGCTCGGCGCTGGACCTCCGCGGGGCAGGTGAAGAACAAAACATGACGG
AAACAGATGCCTTCCCTAAGAGAGAAGTGTTTGATCCAGCAGAAAAATACAAAATGGACC
ACAAGAGGAGAGGAGTTGCTTTAATCTTCAATCACGAGAGGTTCTTCTGGCACTTAACCC
TGCCAGAAAGGCGAGGCACCAGTGCCGACAGAGACAACCTTAAGCGCAGGTTTTCAGATC
TAGGATTTGAAGTGAAATGCTTTAATGATCTTAGAGCTGAAGAATTACTGCTCAAAATTC
ATGAGGCATCAACTGCTAGCCATGTAGATGCCGACTGCTTTTTGTGTGTTTTCCTGAGTC
ACGGCGAAGGCAATCACATCTACGCATATGATGCCAAAATTGAAATTCAGACACTGACTG
GCTTGTTCAAAGGAGACAAGTGTCAGAGCCTGGTTGGAAAACCCAAGATATTTATCATTC
AGGCGTGTCGGGGAAACCAGCATGATGTGCCAGTCCTGCCTTTGGATGTCGTGGATCATC
AGACAGACAAGCTGGATGCCAACCTAACCCAGGTGGACGCCGCCTCGGTGTACACCCTGC
CTGCAGGCGCAGACTTCCTCATGTGTTACTCGGTGGCAGAAGGTTATTATTCTCATCGGG
AAACTGTGAACGGCTCCTGGTACATTCAGGATTTGTGCGAGATGCTGGGAAAATTCGGCT
CCTCCTTAGAGTTCACAGAACTCCTCACACTGGTGAACAGGAAAGTGTCTCAGCGCCGAG
TAGACTTCTGCAAAGACCCAGATGCGATTGGAAAGAAGCAGGTTCCTTGCTTTGCCTCAA
TGCTAACTAAAAAGCTGCATTTCTTTCCAAAATCCTAATAAGGCATCCTGGTTTATGTGT
CATTCAAAATCGGTTTTCTCTTTTTACATAAAGTAGTATCACTAGGCTGAAGAATTATGG
TGTAGGAATTTAAAACATTTTAAGCTTTAATGAGAATTTTTTAAAAAGTTCATATTGGAC
ATGGTGAAGGGGTTTAATAGACATAGAAAAGAAATCCTCAGGGAGTGCCTATAAATAGAA
ATTTACAAGCATTTGTAATTGCCTTTTGTAGTAAATTTCAGGGTTACTCAAAATATCTTA
TTTAACTTGTATTTTGTGACTTTTTTATAAAACTGTTAAGGGTTTTTAAAACCTTAAAAA
TTACTTGTTTTCCCTTAATATTTGAAATTCATGTTTTATTAAATTTTTCTAATTCAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGTTCTGCTCTCCAGGCGCCAGGCTAAGAAGACCGCGTCCCCTGCCCCTGCTTGGACGC
TCTGGCCCCCGCGAACTCCAGGTGAACGAAACGGACCTTAACTCAGCAGGGGCACGGCCA
CCACCGACTCCCACCCCCACGCTCGGAGCGGGCGGCGGAGGGGGCCGAGGAGGAAGGGGC
GGGGGCTGCGGCTCCGGCTGCAGGAAGCAGAAGCCGGTCGCGGCGTCGGTGCTGCGCGTT
CCGCTGCGATGAGCTCGGCGCTGGACCTCCGCGGGGCAGGTGAAGAACAAAACATGACGG
AAACAGATGCCTTCCCTAAGAGAGAAGTGTTTGATCCAGCAGAAAAATACAAAATGGACC
ACAAGAGGAGAGGAGTTGCTTTAATCTTCAATCACGAGAGGTTCTTCTGGCACTTAACCC
TGCCAGAAAGGCGAGGCACCAGTGCCGACAGAGACAACCTTAAGCGCAGGTTTTCAGATC
TAGGATTTGAAGTGAAATGCTTTAATGATCTTAGAGCTGAAGAATTACTGCTCAAAATTC
ATGAGGCATCAACTGCTAGCCATGTAGATGCCGACTGCTTTTTGTGTGTTTTCCTGAGTC
ACGGCGAAGGCAATCACATCTACGCATATGATGCCAAAATTGAAATTCAGACACTGACTG
GCTTGTTCAAAGGAGACAAGTGTCAGAGCCTGGTTGGAAAACCCAAGATATTTATCATTC
AGGCGTGTCGGGGAAACCAGCATGATGTGCCAGTCCTGCCTTTGGATGTCGTGGATCATC
AGACAGACAAGCTGGATGCCAACCTAACCCAGGTGGACGCCGCCTCGGTGTACACCCTGC
CTGCAGGCGCAGACTTCCTCATGTGTTACTCGGTGGCAGAAGGTTATTATTCTCATCGGG
AAACTGTGAACGGCTCCTGGTACATTCAGGATTTGTGCGAGATGCTGGGAAAATTCGGCT
CCTCCTTAGAGTTCACAGAACTCCTCACACTGGTGAACAGGAAAGTGTCTCAGCGCCGAG
TAGACTTCTGCAAAGACCCAGATGCGATTGGAAAGAAGCAGGTTCCTTGCTTTGCCTCAA
TGCTAACTAAAAAGCTGCATTTCTTTCCAAAATCCTAATAAGGCATCCTGGTTTATGTGT
CATTCAAAATCGGTTTTCTCTTTTTACATAAAGTAGTATCACTAGGCTGAAGAATTATGG
TGTAGGAATTTAAAACATTTTAAGCTTTAATGAGAATTTTTTAAAAAGTTCATATTGGAC
ATGGTGAAGGGGTTTAATAGACATAGAAAAGAAATCCTCAGGGAGTGCCTATAAATAGAA
ATTTACAAGCATTTGTAATTGCCTTTTGTAGTAAATTTCAGGGTTACTCAAAATATCTTA
TTTAACTTGTATTTTGTGACTTTTTTATAAAACTGTTAAGGGTTTTTAAAACCTTAAAAA
TTACTTGTTTTCCCTTAATATTTGAAATTCATGTTTTATTAAATTTTTCTAATTCAAAAA
AAAAAAAAAAAA
|
|
gi|29124999|gb|AAO63494.1| |
Protein identifier
|
gi|29124999|gb|AAO63494.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-275, gnl|bosTau2|chr6 (3580094-3579831) |
|
1-275, gnl|canFam2|chr32 (32830526-32830855) |
|
1-275, gnl|hg17|chr4 (110981844-110982348) |
|
1-275, gnl|Hg17|chr4 (110982435-110982128) |
|
1-275, gnl|oryCun1|scaffold_203538 (72099-72583) |
|
1-275, gnl|panTro1|chr3 (127480264-127480768) |
|
1-275, gnl|rheMac2|chr5 (102615998-102616493) |
| |
|
546-723, gnl|bosTau2|chr6 (3561332-3561155) |
|
546-723, gnl|Hg17|chr4 (110973461-110973284) |
|
546-723, gnl|Mm7|chr3 (129749876-129750053) |
| |
|
881-1494, gnl|bosTau2|chr6 (3557297-3556673) |
|
881-1494, gnl|Hg17|chr4 (110968330-110967365) |
|
881-1494, gnl|Mm7|chr3 (129752684-129753320) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-275, gnl|bosTau2|chr6 (3580094-3579831) |
|
1-275, gnl|canFam2|chr32 (32830526-32830855) |
|
1-275, gnl|hg17|chr4 (110981844-110982348) |
|
1-275, gnl|Hg17|chr4 (110982435-110982128) |
|
1-275, gnl|oryCun1|scaffold_203538 (72099-72583) |
|
1-275, gnl|panTro1|chr3 (127480264-127480768) |
|
1-275, gnl|rheMac2|chr5 (102615998-102616493) |
| |
|
546-723, gnl|bosTau2|chr6 (3561332-3561155) |
|
546-723, gnl|Hg17|chr4 (110973461-110973284) |
|
546-723, gnl|Mm7|chr3 (129749876-129750053) |
| |
|
881-1494, gnl|bosTau2|chr6 (3557297-3556673) |
|
881-1494, gnl|Hg17|chr4 (110968330-110967365) |
|
881-1494, gnl|Mm7|chr3 (129752684-129753320) |
|
cje (0.495704) |
|
cst (0.420109) |
|
sto (0.359648) |
|
sin (0.349895) |
|
csp (0.322373) |
|
csk (0.281492) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
ill (0.175593) |
|
duo (0.172801) |
|
cut (0.169924) |
|
cki (0.165235) |
|
mga (0.160205) |
|
lin (0.145603) |
|
pty (0.142714) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eep (0.122564) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
cje (0.495704) |
|
cst (0.420109) |
|
sto (0.359648) |
|
sin (0.349895) |
|
csp (0.322373) |
|
csk (0.281492) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
ill (0.175593) |
|
duo (0.172801) |
|
cut (0.169924) |
|
cki (0.165235) |
|
mga (0.160205) |
|
lin (0.145603) |
|
pty (0.142714) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eep (0.122564) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
