Ss1.1-Pig4-TMW8025J12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGGCCTGGCGGGGCCTCGGGCATGGCGGCCAGCCTGTGGATGGGCGACCTGGAGCCCTA CATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACCATGGGAGAGACTGTGATGAGCGT CAAAATTATCCGAAATCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGC AGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATCAATGGGAAACCCCTTCCAGGAGC CACACCTGCTAAACGTTTTAAGCTGAACTATGCCACTTATGGGAAACAGCCAGATAACAG CCCTGAGTACTCCCTCTTTGTGGGGGACCTGACCCCAGATGTGGATGATGGCATGCTGTA TGAATTCTTTGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGAC AGGCGTGTCTAAGGGCTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGC CCTGACCGAGTGCCAAGGAGCAGTAGGACTGGGGTCTAAACCAGTGCGGCTGAGTGTGGC GATCCCTAAAGCGAGCCGTGTAAAACCGGTGGAATATAGTCAGATGTACAGTTACAGCTA TAACCAGTATTACCAGCAGTATCAGAACTACTATGCCCAGTGGGGCTATGACCAGAACAC AGGCAGCTACAGCTACAGTTATCCCCAGTACGGCTATACTCAGAGCACCATGCAGACATA TGAAGAAGTTGGCGATGATGCATTAGAAGACCCCATGCCACAGCTAGACGTGACGGAGGC CAATAAGGAGTTCATGGAGCAGAGCGAGGAGCTGTATGATGCACTAATGGACTGTCACTG GCAGCCCCTGGACACGGTGTCTTCAGAGATCCCTGCCATGATGTAACCTGGACATGGAAC AAGCCAGAATGGACTGTGAGGAGATAAGAGATTCCTTTTTTAAAGAAAAAAAATTCACAA GAACTTCCACCTTTTTTGAAATGTTTTGTATTATAATAATAAACTATTTCCCAAAAGGTA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGGCCTGGCGGGGCCTCGGGCATGGCGGCCAGCCTGTGGATGGGCGACCTGGAGCCCTA CATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACCATGGGAGAGACTGTGATGAGCGT CAAAATTATCCGAAATCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGC AGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATCAATGGGAAACCCCTTCCAGGAGC CACACCTGCTAAACGTTTTAAGCTGAACTATGCCACTTATGGGAAACAGCCAGATAACAG CCCTGAGTACTCCCTCTTTGTGGGGGACCTGACCCCAGATGTGGATGATGGCATGCTGTA TGAATTCTTTGTCAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGAC AGGCGTGTCTAAGGGCTATGGTTTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGC CCTGACCGAGTGCCAAGGAGCAGTAGGACTGGGGTCTAAACCAGTGCGGCTGAGTGTGGC GATCCCTAAAGCGAGCCGTGTAAAACCGGTGGAATATAGTCAGATGTACAGTTACAGCTA TAACCAGTATTACCAGCAGTATCAGAACTACTATGCCCAGTGGGGCTATGACCAGAACAC AGGCAGCTACAGCTACAGTTATCCCCAGTACGGCTATACTCAGAGCACCATGCAGACATA TGAAGAAGTTGGCGATGATGCATTAGAAGACCCCATGCCACAGCTAGACGTGACGGAGGC CAATAAGGAGTTCATGGAGCAGAGCGAGGAGCTGTATGATGCACTAATGGACTGTCACTG GCAGCCCCTGGACACGGTGTCTTCAGAGATCCCTGCCATGATGTAACCTGGACATGGAAC AAGCCAGAATGGACTGTGAGGAGATAAGAGATTCCTTTTTTAAAGAAAAAAAATTCACAA GAACTTCCACCTTTTTTGAAATGTTTTGTATTATAATAATAAACTATTTCCCAAAAGGTA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 147-248, gnl|bosTau2|chr2 (76760655-76760756) | |
| 147-248, gnl|canFam2|chr2 (74825782-74825663) | |
| 147-248, gnl|danRer3|chr2 (16364986-16365094) | |
| 147-248, gnl|dasNov1|scaffold_11849 (2829-2948) | |
| 147-248, gnl|echTel1|scaffold_320639 (94664-94545) | |
| 147-248, gnl|fr1|chrUn (122569630-122569522) | |
| 147-248, gnl|galGal2|chr23 (2181714-2181602) | |
| 147-248, gnl|hg17|chr1 (28707758-28707877) | |
| 147-248, gnl|Hg17|chr1 (28707760-28707861) | |
| 147-248, gnl|loxAfr1|scaffold_11690 (16809-16690) | |
| 147-248, gnl|mm7|chr4 (131704483-131704364) | |
| 147-248, gnl|Mm7|chr4 (131704479-131704378) | |
| 147-248, gnl|monDom2|scaffold_147 (1157037-1157156) | |
| 147-248, gnl|oryCun1|scaffold_136338 (48470-48589) | |
| 147-248, gnl|rheMac2|chr1 (31291181-31291300) | |
| 147-248, gnl|tetNig1|chrUn_random (126592962-126593056) | |
| 298-433, gnl|bosTau2|chr2 (76764105-76764240) | |
| 298-433, gnl|Hg17|chr1 (28711828-28711963) | |
| 298-433, gnl|Mm7|chr4 (131700246-131700111) | |
| 543-715, gnl|bosTau2|chr2 (76768506-76768677) | |
| 543-715, gnl|Hg17|chr1 (28718295-28718466) | |
| 543-715, gnl|Mm7|chr4 (131692808-131692638) | |
| 748-945, gnl|bosTau2|chr2 (76775337-76775534) | |
| 748-945, gnl|Hg17|chr1 (28724626-28724826) | |
| 748-945, gnl|Mm7|chr4 (131690441-131690252) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-248, gnl|bosTau2|chr2 (76760655-76760756) | |
| 147-248, gnl|canFam2|chr2 (74825782-74825663) | |
| 147-248, gnl|danRer3|chr2 (16364986-16365094) | |
| 147-248, gnl|dasNov1|scaffold_11849 (2829-2948) | |
| 147-248, gnl|echTel1|scaffold_320639 (94664-94545) | |
| 147-248, gnl|fr1|chrUn (122569630-122569522) | |
| 147-248, gnl|galGal2|chr23 (2181714-2181602) | |
| 147-248, gnl|hg17|chr1 (28707758-28707877) | |
| 147-248, gnl|Hg17|chr1 (28707760-28707861) | |
| 147-248, gnl|loxAfr1|scaffold_11690 (16809-16690) | |
| 147-248, gnl|mm7|chr4 (131704483-131704364) | |
| 147-248, gnl|Mm7|chr4 (131704479-131704378) | |
| 147-248, gnl|monDom2|scaffold_147 (1157037-1157156) | |
| 147-248, gnl|oryCun1|scaffold_136338 (48470-48589) | |
| 147-248, gnl|rheMac2|chr1 (31291181-31291300) | |
| 147-248, gnl|tetNig1|chrUn_random (126592962-126593056) | |
| 298-433, gnl|bosTau2|chr2 (76764105-76764240) | |
| 298-433, gnl|Hg17|chr1 (28711828-28711963) | |
| 298-433, gnl|Mm7|chr4 (131700246-131700111) | |
| 543-715, gnl|bosTau2|chr2 (76768506-76768677) | |
| 543-715, gnl|Hg17|chr1 (28718295-28718466) | |
| 543-715, gnl|Mm7|chr4 (131692808-131692638) | |
| 748-945, gnl|bosTau2|chr2 (76775337-76775534) | |
| 748-945, gnl|Hg17|chr1 (28724626-28724826) | |
| 748-945, gnl|Mm7|chr4 (131690441-131690252) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| sto (0.539471) | |
| elu (0.385356) | |
| sug (0.381874) | |
| ebs (0.354904) | |
| cte (0.29274) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| gul (0.177588) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.539471) | |
| elu (0.385356) | |
| sug (0.381874) | |
| ebs (0.354904) | |
| cte (0.29274) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| gul (0.177588) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) |