Non-Coding RNA Search

Ss1.1-Pig4-TMW8025J14.5

Sequence:


               
               GCATCCAGGACGTCATCCTGCGGCTGACGCGCGTCAAGACGGGCGGCCGGACCTCCTTGC
GGAAGGCGCGGTATCACACCCTAACCAAGGTCTGCGCCGTGCAGGAGATCATCGAGGACT
GCGGGAGAAAGCCGCCCTCGCTGCCGCTCTCCGCCGACGCGCACCCCTCGGTGGCCAAGA
TCAACTCCGTGATGTGTGACGTGAACCGGGCCCGAGGCACGCTGATCGCCCTCCTGATGG
GCGTGAGCAGTGACGAGACCTGCAGGCACCTGTCGTGTGTGCTCTCGGGGCTGATGGCGG
ATCTGGACGCTTTGGATGTGTGCGGGCACACGGAAATCAGGAACTATCGGAAGGAGGTGG
TGGAGGATATCAACAAGCTGCTGAAGTACTTGGACTTGGAGGAGGAGGCAGATACCACTT
ACGCCTTCGACCTGGGCCAGAACCACTCCATTCTAAAGATAGAGAAGGTCCTCACGCGAG
TGAGAGAAATAAAAAACGAGCTCCTCCGAGCCCAGAATCCCGCCGAGCTGTACCTGAGCT
CCAAAACGGAACTGCAGGGCTTGATCGGTCAGCTGGACGAGGTCAGTCTTGAGAAGAACC
CCTGCATCCGGGAAGCCAGGAGACGGGCGGTGGTTGAGGTGCAGACTCTCATCACCTACG
TGGACCTGAGGGAGGCCCTGGAGAAGAGACGGGCCCTGGCCAGCGCGGAGCACCCCTCGC
TCGCGGCCGTCTGGACCATCCTGGGGCACTTGTCAGAGATCCAGGAGGAGGTGCTCGCCT
TCGACGGCAACCGAACCGATAAGAACTACATCCGGCTGGAGGAGCTGCTCACCAAGCAGC
TGCTGGCGCTGGACGCCGTCGACCCCCAGGGGGAGGAGAAGTGCAAGGCTGCCCGGAAGC
AGGCGGTGAAGCTGGCCCAGAACATTCTCAGCTATCTGGACCAGAAGTCTGACGAGTGGG
AGTACTGAAACGCCGGGGCCACGGTGGTGTTTCTCGCTGTGCACTTCACAGAGACCTCTG
TGTGTTCGTGGAGGGCGTTTGGTGCGTCGAGGCTACATGTGACTTTTGCACATGCGTACG
GCAATCTCAGTATTTATGATTTAAGCAAATTATATGCGGTATCTCTGCTGCTCTCGATGT
TGCAGAACAAATATTATAGCGTATTAACTTTTCCATTTGGACTGTTACCTGTACGTCGTG
GTGTGGTTTTTTGGTTTTATTTTTTAAATCAAAATGGAATGGGGCAGCTTTTAAAGAAAA
TGTAACGGGCTGTTCGAGCATTAAAATGCGGATACTTCAGGAGCTAGAAATAAACATAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCCAGGACGTCATCCTGCGGCTGACGCGCGTCAAGACGGGCGGCCGGACCTCCTTGC
GGAAGGCGCGGTATCACACCCTAACCAAGGTCTGCGCCGTGCAGGAGATCATCGAGGACT
GCGGGAGAAAGCCGCCCTCGCTGCCGCTCTCCGCCGACGCGCACCCCTCGGTGGCCAAGA
TCAACTCCGTGATGTGTGACGTGAACCGGGCCCGAGGCACGCTGATCGCCCTCCTGATGG
GCGTGAGCAGTGACGAGACCTGCAGGCACCTGTCGTGTGTGCTCTCGGGGCTGATGGCGG
ATCTGGACGCTTTGGATGTGTGCGGGCACACGGAAATCAGGAACTATCGGAAGGAGGTGG
TGGAGGATATCAACAAGCTGCTGAAGTACTTGGACTTGGAGGAGGAGGCAGATACCACTT
ACGCCTTCGACCTGGGCCAGAACCACTCCATTCTAAAGATAGAGAAGGTCCTCACGCGAG
TGAGAGAAATAAAAAACGAGCTCCTCCGAGCCCAGAATCCCGCCGAGCTGTACCTGAGCT
CCAAAACGGAACTGCAGGGCTTGATCGGTCAGCTGGACGAGGTCAGTCTTGAGAAGAACC
CCTGCATCCGGGAAGCCAGGAGACGGGCGGTGGTTGAGGTGCAGACTCTCATCACCTACG
TGGACCTGAGGGAGGCCCTGGAGAAGAGACGGGCCCTGGCCAGCGCGGAGCACCCCTCGC
TCGCGGCCGTCTGGACCATCCTGGGGCACTTGTCAGAGATCCAGGAGGAGGTGCTCGCCT
TCGACGGCAACCGAACCGATAAGAACTACATCCGGCTGGAGGAGCTGCTCACCAAGCAGC
TGCTGGCGCTGGACGCCGTCGACCCCCAGGGGGAGGAGAAGTGCAAGGCTGCCCGGAAGC
AGGCGGTGAAGCTGGCCCAGAACATTCTCAGCTATCTGGACCAGAAGTCTGACGAGTGGG
AGTACTGAAACGCCGGGGCCACGGTGGTGTTTCTCGCTGTGCACTTCACAGAGACCTCTG
TGTGTTCGTGGAGGGCGTTTGGTGCGTCGAGGCTACATGTGACTTTTGCACATGCGTACG
GCAATCTCAGTATTTATGATTTAAGCAAATTATATGCGGTATCTCTGCTGCTCTCGATGT
TGCAGAACAAATATTATAGCGTATTAACTTTTCCATTTGGACTGTTACCTGTACGTCGTG
GTGTGGTTTTTTGGTTTTATTTTTTAAATCAAAATGGAATGGGGCAGCTTTTAAAGAAAA
TGTAACGGGCTGTTCGAGCATTAAAATGCGGATACTTCAGGAGCTAGAAATAAACATAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28277407|gb|AAH44216.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28277407|gb|AAH44216.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, - strand, RNAz p=0.640863

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.640863

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1255, gnl|bosTau2|chr21 (48408468-48407212)
               

               
               1-1255, gnl|Hg17|chr14 (103096878-103095634)
               

               
               1-1255, gnl|Mm7|chr12 (109233642-109232413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1255, gnl|bosTau2|chr21 (48408468-48407212)
               

               
               1-1255, gnl|Hg17|chr14 (103096878-103095634)
               

               
               1-1255, gnl|Mm7|chr12 (109233642-109232413)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.58548)
               

               
               tes (0.207814)
               

               
               cst (0.140036)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.207814)
               

               
               cst (0.140036)
               

               
               med (0.116252)

	1-1255, gnl\|bosTau2\|chr21 (48408468-48407212)
	1-1255, gnl\|Hg17\|chr14 (103096878-103095634)
	1-1255, gnl\|Mm7\|chr12 (109233642-109232413)