Non-Coding RNA Search

Ss1.1-Pig4-TMW8025J16.3

Sequence:


               
               TACAAATAATTATTTATGGTATTGGCCTATGAAGGACATTAACTTAGAAAAATACAAATT
CTGTTAATAATATACTTTTTGGCCTTAAAAAATGTCTTCTGCTGAAAATCTTTTAAATCC
TAATTTTGCTTCTGTTATTCCCTCTCTGCCTCATTAAGAGGAGTTGGGAAGAATGGCAGG
AAGTAGTATCATTGATTGGTTTGTTACTGATCTTTTAGAAAAAAAATATTTGTCTACAAT
GTTAAACTGGGGACTTTTTGTTTGTATGCAGAGGAGAAATGCTGCTCCAAGCCAATCCAA
CTCAGTTTAATCAAATCAATCAAAATCAGCTATTCTGCTTCTGTAGTGTATTTTTACTTA
GCAAAGATAAACCTTAGTAGGAATGCTACTTGACAAGAGGAAAAGTCGTTTCTCAAGCAC
ATACTCAAAACTTGAAGGAGATTGAACCCAATATGATGGAGGAAACACCAAATGGGGTGG
AGGAGTATGAGAAAGATGTGGTCCAAAGCTATCTGATTATATTTTGATGTTGCCAATATT
GCAAAGCCAAAATTTTAATTTGCTTACTTAATATATTTGTTGGCCAGAGATCTATTTTTG
TATCAATGTGCCTTGCATGTATATTAAAAAAAATTTGGAAAGGCCATGTAATAATGCCTG
AGATAGTTGATGGTTCTTACCACCTCACTAATTTTTATGCAGTATGAAATGCTCATTCTA
TCGCCCAACTGGTGCTCTCTGTTAAAAGTTATAGATCTTGTCACAAACTGGAACTATTTT
ATAAACTGGGGAAGTGATTTGATTTACTTTTTTGGTTTTTTTAATTTTTTTTGTTGTTGT
TGTTCTTAGTCTGTTAGTGGCTGTTCTGTAGTGGGAAATAGTAAAAGGATTCTTCACTTC
CTTTCCTCCCCTTTCAGCACCTTCAAGTAATGTGATGACACCATTTCTTGTGTGCTTTGA
AAAAAGTTTTGGCTTGCTGTTTCCTTTAGTGTTATAAAGTGTTATAAAAAGCATTGTTTG
CAAAATCTAGGGAGATAATGGAGTCCACTTTAATTTGGAATTCTGTATGAGCTATGATCC
AAGTTATTGGCTCTTTCCAACTTGAAAAAAAATTTATTGTTAAAGCACCTTGCTTAGAAA
TTTTTAAATATTTATGTCTGCAACAATTGTCTCAAAATAATGAACTGTGCAATTCTTGTC
ATTAAAAAAAAAAATCTGAACTCTCCCTACTGTGACTTGTTAGTTTCTCTGTATTTCCTG
CCAGTGTAAATGTGAAAAGCTTTGCTTGCATTACGTTTTAGAAATGCATTTTGCACACTC
GAATTTTGCTGAAGCTCCATGAAAAGGTTAGATCTAAGTAGATGAATAAAGCTATGCACA
TGTTTTGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAAATAATTATTTATGGTATTGGCCTATGAAGGACATTAACTTAGAAAAATACAAATT
CTGTTAATAATATACTTTTTGGCCTTAAAAAATGTCTTCTGCTGAAAATCTTTTAAATCC
TAATTTTGCTTCTGTTATTCCCTCTCTGCCTCATTAAGAGGAGTTGGGAAGAATGGCAGG
AAGTAGTATCATTGATTGGTTTGTTACTGATCTTTTAGAAAAAAAATATTTGTCTACAAT
GTTAAACTGGGGACTTTTTGTTTGTATGCAGAGGAGAAATGCTGCTCCAAGCCAATCCAA
CTCAGTTTAATCAAATCAATCAAAATCAGCTATTCTGCTTCTGTAGTGTATTTTTACTTA
GCAAAGATAAACCTTAGTAGGAATGCTACTTGACAAGAGGAAAAGTCGTTTCTCAAGCAC
ATACTCAAAACTTGAAGGAGATTGAACCCAATATGATGGAGGAAACACCAAATGGGGTGG
AGGAGTATGAGAAAGATGTGGTCCAAAGCTATCTGATTATATTTTGATGTTGCCAATATT
GCAAAGCCAAAATTTTAATTTGCTTACTTAATATATTTGTTGGCCAGAGATCTATTTTTG
TATCAATGTGCCTTGCATGTATATTAAAAAAAATTTGGAAAGGCCATGTAATAATGCCTG
AGATAGTTGATGGTTCTTACCACCTCACTAATTTTTATGCAGTATGAAATGCTCATTCTA
TCGCCCAACTGGTGCTCTCTGTTAAAAGTTATAGATCTTGTCACAAACTGGAACTATTTT
ATAAACTGGGGAAGTGATTTGATTTACTTTTTTGGTTTTTTTAATTTTTTTTGTTGTTGT
TGTTCTTAGTCTGTTAGTGGCTGTTCTGTAGTGGGAAATAGTAAAAGGATTCTTCACTTC
CTTTCCTCCCCTTTCAGCACCTTCAAGTAATGTGATGACACCATTTCTTGTGTGCTTTGA
AAAAAGTTTTGGCTTGCTGTTTCCTTTAGTGTTATAAAGTGTTATAAAAAGCATTGTTTG
CAAAATCTAGGGAGATAATGGAGTCCACTTTAATTTGGAATTCTGTATGAGCTATGATCC
AAGTTATTGGCTCTTTCCAACTTGAAAAAAAATTTATTGTTAAAGCACCTTGCTTAGAAA
TTTTTAAATATTTATGTCTGCAACAATTGTCTCAAAATAATGAACTGTGCAATTCTTGTC
ATTAAAAAAAAAAATCTGAACTCTCCCTACTGTGACTTGTTAGTTTCTCTGTATTTCCTG
CCAGTGTAAATGTGAAAAGCTTTGCTTGCATTACGTTTTAGAAATGCATTTTGCACACTC
GAATTTTGCTGAAGCTCCATGAAAAGGTTAGATCTAAGTAGATGAATAAAGCTATGCACA
TGTTTTGAAAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               382-497, - strand, RNAz p=0.703423
               

               
               1269-1388, - strand, RNAz p=0.718908

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-497, - strand, RNAz p=0.703423
               

               
               1269-1388, - strand, RNAz p=0.718908

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1392, gnl|bosTau2|chr19 (14297853-14299219)
               

               
               1-1392, gnl|Hg17|chr17 (24609849-24608482)
               

               
               1-1392, gnl|Mm7|chr11 (77796830-77798139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1392, gnl|bosTau2|chr19 (14297853-14299219)
               

               
               1-1392, gnl|Hg17|chr17 (24609849-24608482)
               

               
               1-1392, gnl|Mm7|chr11 (77796830-77798139)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               liv (0.585137)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               jca (0.22792)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               jca (0.22792)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	382-497, - strand, RNAz p=0.703423
	1269-1388, - strand, RNAz p=0.718908

	1-1392, gnl\|bosTau2\|chr19 (14297853-14299219)
	1-1392, gnl\|Hg17\|chr17 (24609849-24608482)
	1-1392, gnl\|Mm7\|chr11 (77796830-77798139)

	liv (0.585137)
	vin (0.332557)
	fco (0.314416)
	jca (0.22792)
	sag (0.182715)
	sin (0.174948)
	rec (0.17307)
	ski (0.146735)
	lin (0.145603)
	kid (0.129735)
	sug (0.127291)
	spc (0.113366)
	cty (0.10408)