Ss1.1-Pig4-TMW8025J20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGATCTAAATATGAAGCTGCCAAGAAATGGAATTTACCAGCAGTCACTATAGCTTGGC TGTTGGAGACTGCTAGAATGGGAAAGAGAGCAAATGAAAGCTGTTTTCTGATTGAAAATC CACCTAAAGAAGAACAAAGTTTGGAAGCTGGAACAACAAACGGGGTGAATCTAAATCCAA ATACTCCAGAGCATCCTGTCAAACAGCTGGAAACTCAAAGAAAAACAGCCATTACACCTC TAGATATGAATCGCTTTCAGAGCAAAGCTTTTCGCGCTGTGATTTCACAGCACTCCGGAC AGGCTTCAGTCTCCCCTGCGGTAGGACAGCCACTTCAGAAGGAGCCCTCATTACACCTGG ATACACCATCAAAATTCCTCTCCAAGGACAAACTCTTCAAGCCTTCCTTTGATGTGAAGG ATGCACTTGCAGTCTTACAAACTCCAGGAGGTCCCAGCCAGCAGAAAAGAAAACTGAGTA CACCACTCTCAGAAGTCATTGTCAGAAACTTGAAACTTGCTTTGGCAAATAGCTCTCGAA ATGCTGTTGCTCTTTCTGCCAGCCCTCAGCTGAAGGATGCCCAATCAGAAAAGGAAGAAG CTCCAAAACCTCTTCACAAGGTAGTAGTCTGTGTTAGTAAAAAACTCAGCAAGAAGCAGA GTGAACTAAATGGGATTGCAGCCTCTCTAGGAGCAGACTACAGGTGGAGTTTTGATGAAA CAGTGACTCATTTTATCTATCAAGGGCGACCAAATGACACTAATCGGGAGTATAAATCTG TAAAAGAAAGAGGAGTACACATTGTTTCAGAGCACTGGCTTTTAGAATGTGCCCAAGAGT ATAAACATCTTCCTGAATCTCTTTATCCACATACTTATAATCCTAAAATGAGTCTGGATA TCAGTGCAGTGCAAGATGGCAGACTCTGTAATAATCGACTACTGTCAGCTGATTCAACAG CAATGGATGATGAGGCAGATCATTTGCCCATAGAAGAAAATGATATAGACAGTATGACCA CCGGTAATAAAGAATCAGCAACAGCAAATGGAAATGGAAGGAATGACTCTAAAGGAGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGATCTAAATATGAAGCTGCCAAGAAATGGAATTTACCAGCAGTCACTATAGCTTGGC TGTTGGAGACTGCTAGAATGGGAAAGAGAGCAAATGAAAGCTGTTTTCTGATTGAAAATC CACCTAAAGAAGAACAAAGTTTGGAAGCTGGAACAACAAACGGGGTGAATCTAAATCCAA ATACTCCAGAGCATCCTGTCAAACAGCTGGAAACTCAAAGAAAAACAGCCATTACACCTC TAGATATGAATCGCTTTCAGAGCAAAGCTTTTCGCGCTGTGATTTCACAGCACTCCGGAC AGGCTTCAGTCTCCCCTGCGGTAGGACAGCCACTTCAGAAGGAGCCCTCATTACACCTGG ATACACCATCAAAATTCCTCTCCAAGGACAAACTCTTCAAGCCTTCCTTTGATGTGAAGG ATGCACTTGCAGTCTTACAAACTCCAGGAGGTCCCAGCCAGCAGAAAAGAAAACTGAGTA CACCACTCTCAGAAGTCATTGTCAGAAACTTGAAACTTGCTTTGGCAAATAGCTCTCGAA ATGCTGTTGCTCTTTCTGCCAGCCCTCAGCTGAAGGATGCCCAATCAGAAAAGGAAGAAG CTCCAAAACCTCTTCACAAGGTAGTAGTCTGTGTTAGTAAAAAACTCAGCAAGAAGCAGA GTGAACTAAATGGGATTGCAGCCTCTCTAGGAGCAGACTACAGGTGGAGTTTTGATGAAA CAGTGACTCATTTTATCTATCAAGGGCGACCAAATGACACTAATCGGGAGTATAAATCTG TAAAAGAAAGAGGAGTACACATTGTTTCAGAGCACTGGCTTTTAGAATGTGCCCAAGAGT ATAAACATCTTCCTGAATCTCTTTATCCACATACTTATAATCCTAAAATGAGTCTGGATA TCAGTGCAGTGCAAGATGGCAGACTCTGTAATAATCGACTACTGTCAGCTGATTCAACAG CAATGGATGATGAGGCAGATCATTTGCCCATAGAAGAAAATGATATAGACAGTATGACCA CCGGTAATAAAGAATCAGCAACAGCAAATGGAAATGGAAGGAATGACTCTAAAGGAGCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 131-420, gnl|bosTau2|chr1 (58246370-58246081) | |
| 131-420, gnl|canFam2|chr23 (33603065-33603278) | |
| 131-420, gnl|danRer3|chr24 (6391970-6391733) | |
| 131-420, gnl|echTel1|scaffold_46438 (2584-2788) | |
| 131-420, gnl|fr1|chrUn (3593560-3593784) | |
| 131-420, gnl|galGal2|chr2 (41753412-41753625) | |
| 131-420, gnl|hg17|chr3 (134839411-134839624) | |
| 131-420, gnl|Hg17|chr3 (134839706-134839417) | |
| 131-420, gnl|loxAfr1|scaffold_143901 (350-137) | |
| 131-420, gnl|mm7|chr9 (103042805-103042592) | |
| 131-420, gnl|Mm7|chr9 (103042508-103042797) | |
| 131-420, gnl|monDom2|scaffold_7 (67281690-67281477) | |
| 131-420, gnl|oryCun1|scaffold_209713 (99701-99914) | |
| 131-420, gnl|panTro1|chr2 (136980991-136981204) | |
| 131-420, gnl|rheMac2|chr2 (154094775-154094562) | |
| 131-420, gnl|rn3|chr8 (108357822-108357609) | |
| 131-420, gnl|tetNig1|chr6 (5017716-5017918) | |
| 131-420, gnl|xenTro1|scaffold_7783 (6754-6964) | |
| 702-826, gnl|bosTau2|chr1 (58241076-58240952) | |
| 702-826, gnl|canFam2|chr23 (33590724-33590860) | |
| 702-826, gnl|danRer3|chr24 (6398498-6398360) | |
| 702-826, gnl|dasNov1|scaffold_70864 (9271-9407) | |
| 702-826, gnl|echTel1|scaffold_323647 (130304-130166) | |
| 702-826, gnl|fr1|chrUn (3592824-3592955) | |
| 702-826, gnl|galGal2|chr2 (41749961-41750099) | |
| 702-826, gnl|hg17|chr3 (134825588-134825726) | |
| 702-826, gnl|Hg17|chr3 (134825719-134825595) | |
| 702-826, gnl|loxAfr1|scaffold_20972 (5375-5234) | |
| 702-826, gnl|mm7|chr9 (103048290-103048152) | |
| 702-826, gnl|Mm7|chr9 (103048157-103048281) | |
| 702-826, gnl|monDom2|scaffold_7 (67291052-67290914) | |
| 702-826, gnl|oryCun1|scaffold_213910 (5563-5425) | |
| 702-826, gnl|panTro1|chr2 (136966560-136966698) | |
| 702-826, gnl|rheMac2|chr2 (154108721-154108583) | |
| 702-826, gnl|rn3|chr8 (108361879-108361741) | |
| 702-826, gnl|tetNig1|chr6 (5016976-5017111) | |
| 702-826, gnl|xenTro1|scaffold_436 (485240-485093) | |
| 973-1077, gnl|bosTau2|chr1 (58240133-58240029) | |
| 973-1077, gnl|Hg17|chr3 (134824737-134824633) | |
| 973-1077, gnl|Mm7|chr9 (103050165-103050269) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-420, gnl|bosTau2|chr1 (58246370-58246081) | |
| 131-420, gnl|canFam2|chr23 (33603065-33603278) | |
| 131-420, gnl|danRer3|chr24 (6391970-6391733) | |
| 131-420, gnl|echTel1|scaffold_46438 (2584-2788) | |
| 131-420, gnl|fr1|chrUn (3593560-3593784) | |
| 131-420, gnl|galGal2|chr2 (41753412-41753625) | |
| 131-420, gnl|hg17|chr3 (134839411-134839624) | |
| 131-420, gnl|Hg17|chr3 (134839706-134839417) | |
| 131-420, gnl|loxAfr1|scaffold_143901 (350-137) | |
| 131-420, gnl|mm7|chr9 (103042805-103042592) | |
| 131-420, gnl|Mm7|chr9 (103042508-103042797) | |
| 131-420, gnl|monDom2|scaffold_7 (67281690-67281477) | |
| 131-420, gnl|oryCun1|scaffold_209713 (99701-99914) | |
| 131-420, gnl|panTro1|chr2 (136980991-136981204) | |
| 131-420, gnl|rheMac2|chr2 (154094775-154094562) | |
| 131-420, gnl|rn3|chr8 (108357822-108357609) | |
| 131-420, gnl|tetNig1|chr6 (5017716-5017918) | |
| 131-420, gnl|xenTro1|scaffold_7783 (6754-6964) | |
| 702-826, gnl|bosTau2|chr1 (58241076-58240952) | |
| 702-826, gnl|canFam2|chr23 (33590724-33590860) | |
| 702-826, gnl|danRer3|chr24 (6398498-6398360) | |
| 702-826, gnl|dasNov1|scaffold_70864 (9271-9407) | |
| 702-826, gnl|echTel1|scaffold_323647 (130304-130166) | |
| 702-826, gnl|fr1|chrUn (3592824-3592955) | |
| 702-826, gnl|galGal2|chr2 (41749961-41750099) | |
| 702-826, gnl|hg17|chr3 (134825588-134825726) | |
| 702-826, gnl|Hg17|chr3 (134825719-134825595) | |
| 702-826, gnl|loxAfr1|scaffold_20972 (5375-5234) | |
| 702-826, gnl|mm7|chr9 (103048290-103048152) | |
| 702-826, gnl|Mm7|chr9 (103048157-103048281) | |
| 702-826, gnl|monDom2|scaffold_7 (67291052-67290914) | |
| 702-826, gnl|oryCun1|scaffold_213910 (5563-5425) | |
| 702-826, gnl|panTro1|chr2 (136966560-136966698) | |
| 702-826, gnl|rheMac2|chr2 (154108721-154108583) | |
| 702-826, gnl|rn3|chr8 (108361879-108361741) | |
| 702-826, gnl|tetNig1|chr6 (5016976-5017111) | |
| 702-826, gnl|xenTro1|scaffold_436 (485240-485093) | |
| 973-1077, gnl|bosTau2|chr1 (58240133-58240029) | |
| 973-1077, gnl|Hg17|chr3 (134824737-134824633) | |
| 973-1077, gnl|Mm7|chr9 (103050165-103050269) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| cty (0.20816) |