Non-Coding RNA Search

Ss1.1-Pig4-TMW8025K01.5

Sequence:


               
               ACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACTAAACGGCATGC
ACACGCTCTGCTTGCTGGACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGG
GAAGGAAGATCTACGAACCGCCTCGGTATATGAGTGTGAACCAAGCAGCACAGCAGCTTC
TGGAGATCGTTCAGAACCAGCGAATGAGAGGAGAAGAGCCAGCAGTCACCGAGGAGACAC
TCTGTGTCGGCTTAGCCAGAGTTGGAGCTGAGGACCAGAAAATTGCAGCAGGCACTTTGC
AGCAGATGTGTACAGTGGACCTGGGAGGACCATTACATTCCTTGATCATCACAGGAGGCA
GCTTGCATCCACTGGAGATGGAGATGCTACGTCTGTTTTCCATACCAGAAGATAGCTCAG
AATCCCAAAGCACCGATGCACTCTGAACTAGACATTTTCCACAGTTAGATGTTAATTTCA
GTCATATATGCGTATACACATATTTGTACAACAACTCAAACAGGTCTTTTGGTTTACCTA
ATAAGTATAAAACAACTGACCAAGAAGAAAAATGTTGACTCAACAGTGCTTGGTTTCCTG
TGGCAATGAGTTTTTTCCCTATGATATCACCAGCTGTTGCTGTTATTTTGGCAGTGTTTC
AAGGAGCAGACCAAGTTGGAAAACTTGGAGATAGACATCCTAGACAGAATCATTTAGAAG
CAGTTTTTGTTTATGAAACCAGTTTATATGAGGTGGAACTTTCTTAAAAAGACAGATGTT
TTGACTACAAGGTAAGTTTTCTTGACAGCGTTTGGTGTTATTGCATATAAAGAGAGGTAG
GAGGAATAAGCCCACACCCAGCAGTCCTGCTTACTTAAAGCTCAGCTGAGTACATACTAC
AAAATGACATCCTTTTGAATTAGCTTGTCTTGTTAAACTGACATCCTAATTATGTGCCTC
ATGTTCTGCTGTATTTCGGAGGTTTGTAAATGTTCAGCCAGCATGTACAGTTGCTCTTTG
GTTTTAATTAGCATCTTTCTCATCCAAGCTGACAGATGGAAAAGTTGCTGACTACAAAAT
AAAACTTAAGTTTGAAGACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACTAAACGGCATGC
ACACGCTCTGCTTGCTGGACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGG
GAAGGAAGATCTACGAACCGCCTCGGTATATGAGTGTGAACCAAGCAGCACAGCAGCTTC
TGGAGATCGTTCAGAACCAGCGAATGAGAGGAGAAGAGCCAGCAGTCACCGAGGAGACAC
TCTGTGTCGGCTTAGCCAGAGTTGGAGCTGAGGACCAGAAAATTGCAGCAGGCACTTTGC
AGCAGATGTGTACAGTGGACCTGGGAGGACCATTACATTCCTTGATCATCACAGGAGGCA
GCTTGCATCCACTGGAGATGGAGATGCTACGTCTGTTTTCCATACCAGAAGATAGCTCAG
AATCCCAAAGCACCGATGCACTCTGAACTAGACATTTTCCACAGTTAGATGTTAATTTCA
GTCATATATGCGTATACACATATTTGTACAACAACTCAAACAGGTCTTTTGGTTTACCTA
ATAAGTATAAAACAACTGACCAAGAAGAAAAATGTTGACTCAACAGTGCTTGGTTTCCTG
TGGCAATGAGTTTTTTCCCTATGATATCACCAGCTGTTGCTGTTATTTTGGCAGTGTTTC
AAGGAGCAGACCAAGTTGGAAAACTTGGAGATAGACATCCTAGACAGAATCATTTAGAAG
CAGTTTTTGTTTATGAAACCAGTTTATATGAGGTGGAACTTTCTTAAAAAGACAGATGTT
TTGACTACAAGGTAAGTTTTCTTGACAGCGTTTGGTGTTATTGCATATAAAGAGAGGTAG
GAGGAATAAGCCCACACCCAGCAGTCCTGCTTACTTAAAGCTCAGCTGAGTACATACTAC
AAAATGACATCCTTTTGAATTAGCTTGTCTTGTTAAACTGACATCCTAATTATGTGCCTC
ATGTTCTGCTGTATTTCGGAGGTTTGTAAATGTTCAGCCAGCATGTACAGTTGCTCTTTG
GTTTTAATTAGCATCTTTCTCATCCAAGCTGACAGATGGAAAAGTTGCTGACTACAAAAT
AAAACTTAAGTTTGAAGACAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837073|ref|XP_589310.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837073|ref|XP_589310.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               984-1087, - strand, RNAz p=0.505282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               984-1087, - strand, RNAz p=0.505282

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               221-1087, gnl|bosTau2|chr3 (37902204-37903105)
               

               
               221-1087, gnl|Hg17|chr1 (101168210-101166842)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-1087, gnl|bosTau2|chr3 (37902204-37903105)
               

               
               221-1087, gnl|Hg17|chr1 (101168210-101166842)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               elu (0.385356)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               ill (0.175593)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               ill (0.175593)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

	221-1087, gnl\|bosTau2\|chr3 (37902204-37903105)
	221-1087, gnl\|Hg17\|chr1 (101168210-101166842)

	elu (0.385356)
	ova (0.258264)
	mgp (0.230681)
	spc (0.226732)
	ill (0.175593)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	ret (0.128733)
	sug (0.127291)
	cty (0.10408)