Non-Coding RNA Search

Ss1.1-Pig4-TMW8025K02.3

Sequence:


               
               GGATTCTCCGTCACCGGCAGGGTCCTGAACGGCCCCGAAGGAGAGGGTGTTCCGGACGCG
GTGGTCACCCTCAACAACCAAATCAAAGTCAGAACAAAAGCCGATGGCTCTTTCCGTCTG
GAGAACATAACAACGGGGACGTACACCATCCACGCCCAGAAGGAGCACCTCTACTTTGAA
ACCGTCACCATCAAAATCGCGCCCAACACGCCACAGCTGGCTGACATCATTGCCACGGGG
TTCAGCGTCTGTGGCCAGATATCAATCCTCCGCTTCCCTGACACTGTCAAGCAGATGAGT
AAATACAAAGTTGTCCTGTCCTCTCAAGACAAGGACAAGTCTTTGGTCACCGTGGAGACG
GATGCTCAGGGATCATTTTGTTTTAAAGCAAAACCAGGCACCTACAAAGTCCAGGTGATG
GTTCCTGAGGTGGAGACCAGAGCGGGGCTGACACTGAAGCCCCAGACGCTGCTTCTGGCT
GTGACTGACAGGCCTGTGATGGATGTGGCCTTTGTGCAGTTCTTGGCATCGGTTTCTGGG
AAAGTTTCTTGTTTGGACACCTGCGGTGACCTGCTGGTGACCCTGCAATCCCTGAGCCGC
CAGGGCGAGAAGCGGAGCCTCCAGCTCTCCGGCAAGCTCAACTCCATGACTTTCACGTTT
GACAATGTGCTGCCCGGAAAATACAAAACCAGCATCATGCACGAAGATTGGTGCTGGAAG
AACAAGAGTCTGGAGGTGGAAGTTCTGGAGGAGGACGTGTCGGCCGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTCTCCGTCACCGGCAGGGTCCTGAACGGCCCCGAAGGAGAGGGTGTTCCGGACGCG
GTGGTCACCCTCAACAACCAAATCAAAGTCAGAACAAAAGCCGATGGCTCTTTCCGTCTG
GAGAACATAACAACGGGGACGTACACCATCCACGCCCAGAAGGAGCACCTCTACTTTGAA
ACCGTCACCATCAAAATCGCGCCCAACACGCCACAGCTGGCTGACATCATTGCCACGGGG
TTCAGCGTCTGTGGCCAGATATCAATCCTCCGCTTCCCTGACACTGTCAAGCAGATGAGT
AAATACAAAGTTGTCCTGTCCTCTCAAGACAAGGACAAGTCTTTGGTCACCGTGGAGACG
GATGCTCAGGGATCATTTTGTTTTAAAGCAAAACCAGGCACCTACAAAGTCCAGGTGATG
GTTCCTGAGGTGGAGACCAGAGCGGGGCTGACACTGAAGCCCCAGACGCTGCTTCTGGCT
GTGACTGACAGGCCTGTGATGGATGTGGCCTTTGTGCAGTTCTTGGCATCGGTTTCTGGG
AAAGTTTCTTGTTTGGACACCTGCGGTGACCTGCTGGTGACCCTGCAATCCCTGAGCCGC
CAGGGCGAGAAGCGGAGCCTCCAGCTCTCCGGCAAGCTCAACTCCATGACTTTCACGTTT
GACAATGTGCTGCCCGGAAAATACAAAACCAGCATCATGCACGAAGATTGGTGCTGGAAG
AACAAGAGTCTGGAGGTGGAAGTTCTGGAGGAGGACGTGTCGGCCGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55643515|ref|XP_510851.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55643515|ref|XP_510851.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               299-416, + strand, RNAz p=0.579439

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-416, + strand, RNAz p=0.579439

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC041131, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC041131, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               239-416, gnl|bosTau2|chr25 (16352568-16352391)
               

               
               239-416, gnl|canFam2|chr6 (30800800-30800609)
               

               
               239-416, gnl|dasNov1|scaffold_11215 (5135-5327)
               

               
               239-416, gnl|echTel1|scaffold_285923 (5870-5678)
               

               
               239-416, gnl|fr1|chrUn (84565494-84565301)
               

               
               239-416, gnl|galGal2|chr14 (9781933-9782127)
               

               
               239-416, gnl|hg17|chr16 (14864357-14864548)
               

               
               239-416, gnl|Hg17|chr16 (18452003-18451826)
               

               
               239-416, gnl|mm7|chr7 (42230722-42230913)
               

               
               239-416, gnl|Mm7|chr7 (42230735-42230912)
               

               
               239-416, gnl|monDom2|scaffold_19 (36250427-36250630)
               

               
               239-416, gnl|oryCun1|scaffold_196233 (46478-46669)
               

               
               239-416, gnl|panTro1|chr18 (15248227-15248419)
               

               
               239-416, gnl|rheMac2|chr20 (15979360-15979551)
               

               
               239-416, gnl|rn3|chr1 (96629757-96629948)
               

               
               239-416, gnl|tetNig1|chr18 (4743973-4743779)
               

               
               239-416, gnl|xenTro1|scaffold_214 (255447-255631)
               


               
               556-686, gnl|bosTau2|chr25 (16349368-16349238)
               

               
               556-686, gnl|Hg17|chr16 (18449992-18449862)
               

               
               556-686, gnl|Mm7|chr7 (42233310-42233440)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-416, gnl|bosTau2|chr25 (16352568-16352391)
               

               
               239-416, gnl|canFam2|chr6 (30800800-30800609)
               

               
               239-416, gnl|dasNov1|scaffold_11215 (5135-5327)
               

               
               239-416, gnl|echTel1|scaffold_285923 (5870-5678)
               

               
               239-416, gnl|fr1|chrUn (84565494-84565301)
               

               
               239-416, gnl|galGal2|chr14 (9781933-9782127)
               

               
               239-416, gnl|hg17|chr16 (14864357-14864548)
               

               
               239-416, gnl|Hg17|chr16 (18452003-18451826)
               

               
               239-416, gnl|mm7|chr7 (42230722-42230913)
               

               
               239-416, gnl|Mm7|chr7 (42230735-42230912)
               

               
               239-416, gnl|monDom2|scaffold_19 (36250427-36250630)
               

               
               239-416, gnl|oryCun1|scaffold_196233 (46478-46669)
               

               
               239-416, gnl|panTro1|chr18 (15248227-15248419)
               

               
               239-416, gnl|rheMac2|chr20 (15979360-15979551)
               

               
               239-416, gnl|rn3|chr1 (96629757-96629948)
               

               
               239-416, gnl|tetNig1|chr18 (4743973-4743779)
               

               
               239-416, gnl|xenTro1|scaffold_214 (255447-255631)
               


               
               556-686, gnl|bosTau2|chr25 (16349368-16349238)
               

               
               556-686, gnl|Hg17|chr16 (18449992-18449862)
               

               
               556-686, gnl|Mm7|chr7 (42233310-42233440)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	239-416, gnl\|bosTau2\|chr25 (16352568-16352391)
	239-416, gnl\|canFam2\|chr6 (30800800-30800609)
	239-416, gnl\|dasNov1\|scaffold_11215 (5135-5327)
	239-416, gnl\|echTel1\|scaffold_285923 (5870-5678)
	239-416, gnl\|fr1\|chrUn (84565494-84565301)
	239-416, gnl\|galGal2\|chr14 (9781933-9782127)
	239-416, gnl\|hg17\|chr16 (14864357-14864548)
	239-416, gnl\|Hg17\|chr16 (18452003-18451826)
	239-416, gnl\|mm7\|chr7 (42230722-42230913)
	239-416, gnl\|Mm7\|chr7 (42230735-42230912)
	239-416, gnl\|monDom2\|scaffold_19 (36250427-36250630)
	239-416, gnl\|oryCun1\|scaffold_196233 (46478-46669)
	239-416, gnl\|panTro1\|chr18 (15248227-15248419)
	239-416, gnl\|rheMac2\|chr20 (15979360-15979551)
	239-416, gnl\|rn3\|chr1 (96629757-96629948)
	239-416, gnl\|tetNig1\|chr18 (4743973-4743779)
	239-416, gnl\|xenTro1\|scaffold_214 (255447-255631)

	556-686, gnl\|bosTau2\|chr25 (16349368-16349238)
	556-686, gnl\|Hg17\|chr16 (18449992-18449862)
	556-686, gnl\|Mm7\|chr7 (42233310-42233440)