Ss1.1-Pig4-TMW8025K09.3
|
CATGAGGCTCCCAGACCCGTTCACTCCTAATCTGAAGGTGGATATGTTGAGTGAAATTAA
CATTGCACCCCGGATTCTCACCAATTTCACTGGAGTGATGCCACCTCAGTTCAAAAAGGA
TTTGGATTCCTATCTTAAAACTCGATCACCCGTCACTTTTCTGTCTGATCTGCGTAGCAA
CCTACAGGTATCCAATGAGCCTGGCAATCGCTACAACCTCCAGCTCATTAATGCACTGGT
GCTCTATGTAGGGACTCAGGCCATTGCACACATCCACAACAAGGGTAGCACGCCTTCAAT
GAGCACGATCACCCACTCGGCTCACATGGACATCTTCCAGAACCTGGCTGTGGACTTGGA
CACTGAAGGTCGGTATCTCTTCTTGAATGCAATTGCAAATCAGCTGCGGTACCCAAATAG
CCACACTCACTACTTCAGCTGCACAATGCTGTACCTTTTTGCAGAGGCCAACACTGAAGC
TATCCAAGAACAGATCACAAGGGTTCTTTTGGAACGGTTGATTGTAAATAGGCCACATCC
TTGGGGTCTTCTTATTACCTTCATTGAGCTGATTAAAAACCCAGCGTTCAAGTTCTGGAA
CCATGAGTTTGTACACTGTGCCCCAGAAATTGAAAAGTTATTCCAGTCGGTCGCGCAGTG
CTGCATGGGACAGAAGCAGGCTCAACAAGTAATGGAAGGGACAGGTGCCAGTTAGATGGA
ACCACATCTCTGCTGCAAATGTGTCAGCCTGGAAGTCCCACTCTACCAAGTTGCTAAACT
GGCTGAAGATCCTTTCAGCTCTTCCTGATTTTCCCAGCCCTTTGGTTCTCGGGTATCTGT
CCCAATTACTGTTTGGGTCAGCTTCCTGTCTATGTGGGCACGTTCCAAAGTTTAAATGCA
TTTTTTTGACTCTTGGCCAAAATTTAGAAGATGCTGTGAATATCATTTTGAACTTGTGTA
AATATATGAAAGAGAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATGAGGCTCCCAGACCCGTTCACTCCTAATCTGAAGGTGGATATGTTGAGTGAAATTAA
CATTGCACCCCGGATTCTCACCAATTTCACTGGAGTGATGCCACCTCAGTTCAAAAAGGA
TTTGGATTCCTATCTTAAAACTCGATCACCCGTCACTTTTCTGTCTGATCTGCGTAGCAA
CCTACAGGTATCCAATGAGCCTGGCAATCGCTACAACCTCCAGCTCATTAATGCACTGGT
GCTCTATGTAGGGACTCAGGCCATTGCACACATCCACAACAAGGGTAGCACGCCTTCAAT
GAGCACGATCACCCACTCGGCTCACATGGACATCTTCCAGAACCTGGCTGTGGACTTGGA
CACTGAAGGTCGGTATCTCTTCTTGAATGCAATTGCAAATCAGCTGCGGTACCCAAATAG
CCACACTCACTACTTCAGCTGCACAATGCTGTACCTTTTTGCAGAGGCCAACACTGAAGC
TATCCAAGAACAGATCACAAGGGTTCTTTTGGAACGGTTGATTGTAAATAGGCCACATCC
TTGGGGTCTTCTTATTACCTTCATTGAGCTGATTAAAAACCCAGCGTTCAAGTTCTGGAA
CCATGAGTTTGTACACTGTGCCCCAGAAATTGAAAAGTTATTCCAGTCGGTCGCGCAGTG
CTGCATGGGACAGAAGCAGGCTCAACAAGTAATGGAAGGGACAGGTGCCAGTTAGATGGA
ACCACATCTCTGCTGCAAATGTGTCAGCCTGGAAGTCCCACTCTACCAAGTTGCTAAACT
GGCTGAAGATCCTTTCAGCTCTTCCTGATTTTCCCAGCCCTTTGGTTCTCGGGTATCTGT
CCCAATTACTGTTTGGGTCAGCTTCCTGTCTATGTGGGCACGTTCCAAAGTTTAAATGCA
TTTTTTTGACTCTTGGCCAAAATTTAGAAGATGCTGTGAATATCATTTTGAACTTGTGTA
AATATATGAAAGAGAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
186-370, gnl|bosTau2|chr18 (23207186-23207002) |
|
186-370, gnl|canFam2|chr2 (61013164-61012954) |
|
186-370, gnl|danRer3|chrUn (105301640-105301832) |
|
186-370, gnl|dasNov1|scaffold_107748 (1704-1494) |
|
186-370, gnl|echTel1|scaffold_294044 (44200-43990) |
|
186-370, gnl|fr1|chrUn (279556862-279557059) |
|
186-370, gnl|galGal2|chr11 (1344935-1345142) |
|
186-370, gnl|hg17|chr16 (57116569-57116781) |
|
186-370, gnl|Hg17|chr16 (57116766-57116582) |
|
186-370, gnl|mm7|chr8 (94312222-94312433) |
|
186-370, gnl|Mm7|chr8 (94312421-94312237) |
|
186-370, gnl|monDom2|scaffold_63 (8276849-8277059) |
|
186-370, gnl|oryCun1|scaffold_204159 (53466-53672) |
|
186-370, gnl|panTro1|chr18 (51235919-51236131) |
|
186-370, gnl|rheMac2|chr20 (56880491-56880703) |
|
186-370, gnl|rn3|chr19 (9804760-9804551) |
|
186-370, gnl|tetNig1|chrUn_random (139873778-139873581) |
|
186-370, gnl|xenTro1|scaffold_671 (670276-670056) |
| |
|
637-978, gnl|bosTau2|chr18 (23203634-23203293) |
|
637-978, gnl|Hg17|chr16 (57112441-57112100) |
|
637-978, gnl|Mm7|chr8 (94309439-94309110) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
186-370, gnl|bosTau2|chr18 (23207186-23207002) |
|
186-370, gnl|canFam2|chr2 (61013164-61012954) |
|
186-370, gnl|danRer3|chrUn (105301640-105301832) |
|
186-370, gnl|dasNov1|scaffold_107748 (1704-1494) |
|
186-370, gnl|echTel1|scaffold_294044 (44200-43990) |
|
186-370, gnl|fr1|chrUn (279556862-279557059) |
|
186-370, gnl|galGal2|chr11 (1344935-1345142) |
|
186-370, gnl|hg17|chr16 (57116569-57116781) |
|
186-370, gnl|Hg17|chr16 (57116766-57116582) |
|
186-370, gnl|mm7|chr8 (94312222-94312433) |
|
186-370, gnl|Mm7|chr8 (94312421-94312237) |
|
186-370, gnl|monDom2|scaffold_63 (8276849-8277059) |
|
186-370, gnl|oryCun1|scaffold_204159 (53466-53672) |
|
186-370, gnl|panTro1|chr18 (51235919-51236131) |
|
186-370, gnl|rheMac2|chr20 (56880491-56880703) |
|
186-370, gnl|rn3|chr19 (9804760-9804551) |
|
186-370, gnl|tetNig1|chrUn_random (139873778-139873581) |
|
186-370, gnl|xenTro1|scaffold_671 (670276-670056) |
| |
|
637-978, gnl|bosTau2|chr18 (23203634-23203293) |
|
637-978, gnl|Hg17|chr16 (57112441-57112100) |
|
637-978, gnl|Mm7|chr8 (94309439-94309110) |
|
lnt (0.426925) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
ton (0.1755) |
|
nco (0.161734) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ret (0.128733) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eep (0.122564) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
lnt (0.426925) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
ton (0.1755) |
|
nco (0.161734) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ret (0.128733) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eep (0.122564) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
jej (0.0989218) |
