Ss1.1-Pig4-TMW8025L03.3.5
|
TTATGCACCGTTCGCTTCAGACTTCGAAGGTATTGCAGATATGCCCTCTGATTTCGAGAA
GGGTACAAAACCGTTTAAACCACTGGAACAACTTATGGGAGTTTTTCCAGCTGCAAGTGG
TAACTTTCTACCTCCATCATGGCGGAAGCTCATGAGTGATCCTGATTCTAGTATAATTGA
CTTCTACCCAGAAGATTTTGCTATTGATTTGAATGGGAAGAAGTATGCATGGCAAGGTGT
GGCTTTGCTGCCCTTCGTGGATGAGCGAAGACTGCGAGCTGCCCTGGAAGAGGTGTACCC
GGACCTCACTCCTGAAGAGACCAGAAGAAACAGTCTTGGAGGAGATGTTTTATTTGTGGG
GAAACATCACCCACTGCATGACTTCGTATTAGAGCTGTACAAGACAGGCTCCACAGAGTC
AGTGGACGTACCACCTGAACTATGTCACGGGATTCAAGGAAAGTTTTCTTTGGATGAAGA
AGCCATTCTTCCTGATCAAGTAGTATGTTCGCCTGTTCCCATGTTAAGAGATCTGACACA
GAACGGGACAATCAGTATTAATTTTAAAGACCCACAGTTTGCTGAAGATTACGTTTTCAA
AGCTGTAATGCTTCCAGGAGCAAGAAAACCTGCACCAGTGCTGAAACCTGGCGACTGGGA
GAAATCCAGCAATGGGAGGCAGTGGAAGCCCCAGCTCGGCTTCAACCGGGACCGGCGGCC
CGTCCACCTGGATCCTTCAGCCTTTAGGACTTTGGGCCATGTTATGCCGAGAGGCTCAGG
ACCTGGCGTTTACGGTAATGCTGCACCACCACCTGCGACTTACCAGGGAAACTTGTACAG
GCCCCTGCTGAGAGGACAAACCCAGATTCCAAAGCTTATGTCAAATATGAGGCCTCAGGA
TTCCTGGCGAGGTCCTCCTCCCCTTTTCCAGCAGCAGAGATTCGACAGGGGTGTTGGGGC
TGAACCTCTGCTGCCATGGAACCGGATGCTTCAAACCCAGAACGCAGCCTTCCAGCCAAA
CCAGTACCAGATGCTGGCAGGGCCAGGCGGGTACCCACCCAGACGCGACGACCGTGGAGG
GAGACAGGGATATCCCAGAGAAGGAAGGAAATACCCTTTGCCACCACCCTCAGGAAGATA
CAGTTGGAATTAGGCTTTTGTAAAGCTTTCCCAAATCCTTTCATCGTTCTACAGTTTTAT
GCTATTTGTGGAAAGATTTCTTTCTCAAGTAGTAGTTTTTAATAAAACTACAGTATTTTG
TGTATTTCTTTTAAATGTGTATATTTCTACTGATCCGATCTCACTGTTTTATGTTGCTTT
CCAAAGATGTGTGTGCATAATACAGTGGATCTGAATTTATTATTGCTTGTAAAACATATT
TGATGGAATAGGAATACTGGTTTTTCATTATGGTTAAAAATCAAACCAGCTGTGGATTTC
AAAACACAGTGTATTCTAGATCATCTAAGATCCATGCTGATTTTTAATGCACAAGAATTA
GGTATGAACTCTTGAGCTGGAACCCTCAGCCAACTAGAGTGTATATTGTTCACTATTTCT
TTGGGAACATTTCATTAATGTACTTGTCATATGGAACTTTCTGGACTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTATGCACCGTTCGCTTCAGACTTCGAAGGTATTGCAGATATGCCCTCTGATTTCGAGAA
GGGTACAAAACCGTTTAAACCACTGGAACAACTTATGGGAGTTTTTCCAGCTGCAAGTGG
TAACTTTCTACCTCCATCATGGCGGAAGCTCATGAGTGATCCTGATTCTAGTATAATTGA
CTTCTACCCAGAAGATTTTGCTATTGATTTGAATGGGAAGAAGTATGCATGGCAAGGTGT
GGCTTTGCTGCCCTTCGTGGATGAGCGAAGACTGCGAGCTGCCCTGGAAGAGGTGTACCC
GGACCTCACTCCTGAAGAGACCAGAAGAAACAGTCTTGGAGGAGATGTTTTATTTGTGGG
GAAACATCACCCACTGCATGACTTCGTATTAGAGCTGTACAAGACAGGCTCCACAGAGTC
AGTGGACGTACCACCTGAACTATGTCACGGGATTCAAGGAAAGTTTTCTTTGGATGAAGA
AGCCATTCTTCCTGATCAAGTAGTATGTTCGCCTGTTCCCATGTTAAGAGATCTGACACA
GAACGGGACAATCAGTATTAATTTTAAAGACCCACAGTTTGCTGAAGATTACGTTTTCAA
AGCTGTAATGCTTCCAGGAGCAAGAAAACCTGCACCAGTGCTGAAACCTGGCGACTGGGA
GAAATCCAGCAATGGGAGGCAGTGGAAGCCCCAGCTCGGCTTCAACCGGGACCGGCGGCC
CGTCCACCTGGATCCTTCAGCCTTTAGGACTTTGGGCCATGTTATGCCGAGAGGCTCAGG
ACCTGGCGTTTACGGTAATGCTGCACCACCACCTGCGACTTACCAGGGAAACTTGTACAG
GCCCCTGCTGAGAGGACAAACCCAGATTCCAAAGCTTATGTCAAATATGAGGCCTCAGGA
TTCCTGGCGAGGTCCTCCTCCCCTTTTCCAGCAGCAGAGATTCGACAGGGGTGTTGGGGC
TGAACCTCTGCTGCCATGGAACCGGATGCTTCAAACCCAGAACGCAGCCTTCCAGCCAAA
CCAGTACCAGATGCTGGCAGGGCCAGGCGGGTACCCACCCAGACGCGACGACCGTGGAGG
GAGACAGGGATATCCCAGAGAAGGAAGGAAATACCCTTTGCCACCACCCTCAGGAAGATA
CAGTTGGAATTAGGCTTTTGTAAAGCTTTCCCAAATCCTTTCATCGTTCTACAGTTTTAT
GCTATTTGTGGAAAGATTTCTTTCTCAAGTAGTAGTTTTTAATAAAACTACAGTATTTTG
TGTATTTCTTTTAAATGTGTATATTTCTACTGATCCGATCTCACTGTTTTATGTTGCTTT
CCAAAGATGTGTGTGCATAATACAGTGGATCTGAATTTATTATTGCTTGTAAAACATATT
TGATGGAATAGGAATACTGGTTTTTCATTATGGTTAAAAATCAAACCAGCTGTGGATTTC
AAAACACAGTGTATTCTAGATCATCTAAGATCCATGCTGATTTTTAATGCACAAGAATTA
GGTATGAACTCTTGAGCTGGAACCCTCAGCCAACTAGAGTGTATATTGTTCACTATTTCT
TTGGGAACATTTCATTAATGTACTTGTCATATGGAACTTTCTGGACTT
|
|
gi|13623599|gb|AAH06417.1| |
Protein identifier
|
gi|13623599|gb|AAH06417.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
623-756, gnl|bosTau2|chr13 (25733210-25733077) |
|
623-756, gnl|canFam2|chr24 (5064726-5064566) |
|
623-756, gnl|danRer3|chrUn (96637704-96637545) |
|
623-756, gnl|dasNov1|scaffold_7659 (4608-4449) |
|
623-756, gnl|echTel1|scaffold_302017 (5-151) |
|
623-756, gnl|fr1|chrUn (246778806-246778961) |
|
623-756, gnl|galGal2|chr3 (3433319-3433154) |
|
623-756, gnl|hg17|chr20 (21294193-21294353) |
|
623-756, gnl|Hg17|chr20 (21294209-21294342) |
|
623-756, gnl|loxAfr1|scaffold_3255 (65832-65991) |
|
623-756, gnl|mm7|chr2 (146802245-146802405) |
|
623-756, gnl|Mm7|chr2 (146802261-146802394) |
|
623-756, gnl|monDom2|scaffold_1 (57131885-57132045) |
|
623-756, gnl|oryCun1|scaffold_194684 (15124-15282) |
|
623-756, gnl|panTro1|chr21 (21219452-21219612) |
|
623-756, gnl|rheMac2|chr10 (54655730-54655890) |
|
623-756, gnl|rn3|chr3 (135613419-135613580) |
|
623-756, gnl|tetNig1|chr14 (9523804-9523957) |
|
623-756, gnl|xenTro1|scaffold_352 (370576-370423) |
| |
|
1085-1608, gnl|bosTau2|chr13 (25717033-25716511) |
|
1085-1608, gnl|Hg17|chr20 (21317908-21318428) |
|
1085-1608, gnl|Mm7|chr2 (146818337-146818821) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
623-756, gnl|bosTau2|chr13 (25733210-25733077) |
|
623-756, gnl|canFam2|chr24 (5064726-5064566) |
|
623-756, gnl|danRer3|chrUn (96637704-96637545) |
|
623-756, gnl|dasNov1|scaffold_7659 (4608-4449) |
|
623-756, gnl|echTel1|scaffold_302017 (5-151) |
|
623-756, gnl|fr1|chrUn (246778806-246778961) |
|
623-756, gnl|galGal2|chr3 (3433319-3433154) |
|
623-756, gnl|hg17|chr20 (21294193-21294353) |
|
623-756, gnl|Hg17|chr20 (21294209-21294342) |
|
623-756, gnl|loxAfr1|scaffold_3255 (65832-65991) |
|
623-756, gnl|mm7|chr2 (146802245-146802405) |
|
623-756, gnl|Mm7|chr2 (146802261-146802394) |
|
623-756, gnl|monDom2|scaffold_1 (57131885-57132045) |
|
623-756, gnl|oryCun1|scaffold_194684 (15124-15282) |
|
623-756, gnl|panTro1|chr21 (21219452-21219612) |
|
623-756, gnl|rheMac2|chr10 (54655730-54655890) |
|
623-756, gnl|rn3|chr3 (135613419-135613580) |
|
623-756, gnl|tetNig1|chr14 (9523804-9523957) |
|
623-756, gnl|xenTro1|scaffold_352 (370576-370423) |
| |
|
1085-1608, gnl|bosTau2|chr13 (25717033-25716511) |
|
1085-1608, gnl|Hg17|chr20 (21317908-21318428) |
|
1085-1608, gnl|Mm7|chr2 (146818337-146818821) |
|
cmu (0.372787) |
|
ski (0.29347) |
|
ret (0.257467) |
|
sug (0.254582) |
|
nms (0.213858) |
|
col (0.195008) |
|
sag (0.182715) |
|
sto (0.179824) |
|
sin (0.174948) |
|
cut (0.169924) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
fat (0.147427) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
cmu (0.372787) |
|
ski (0.29347) |
|
ret (0.257467) |
|
sug (0.254582) |
|
nms (0.213858) |
|
col (0.195008) |
|
sag (0.182715) |
|
sto (0.179824) |
|
sin (0.174948) |
|
cut (0.169924) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
fat (0.147427) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
jej (0.0989218) |
