Ss1.1-Pig4-TMW8025L06.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCTACCTGGATATCGTCTCTCCCTTCGAGCTCAGGCTGGGTTCTCAGAAAAAAGTGC AGAGAAGGGCGACTCAGGCCTCTTCCAGCCCCGAGCTAGATTTCGGAGGAGCTGCTGCCT TTGACCTAGACCAAGAGGAAGCTGTGGACGAGAGAGCCGTGCAGGATGTGGAGTCCTTGT CCAGTCTGATCCAGGAGATCTTGGACTTTGATCAAGCTCAGCAGATAAAATGCTTTAACA GTAAATTGTTCCTGTGCAATATCTGTTTCTGTGAGAAGCTGGGGAGCGAATGCATGTACT TCTTGGAGTGCAGGCATGTGTACTGCAAAGCCTGTCTCAAGGACTACTTTGAGATCCAGA TCAGAGATGGCCAAGTTCAGTGCCTCAACTGCCCAGAACCCAAGTGCCCTTCAGTGGCCA CTCCTGGTCAGGTCAAAGAGCTAGTGGACGCCGAGTTATTCGCCCGCTACGACCGCCTTC TCCTCCAGTCCACCCTGGACCTGATGGCAGACGTGGTGTACTGCCCCCGCCCGTGCTGCC AGCTGCCTGTGATGCAGGAGCCTGGCTGCACAATGGGCATCTGCTCCAGCTGTAATTTCG CCTTCTGTACACTCTGCAGATTGACCTACCATGGGGTCTCTCCGTGTAAGGTGACTGCAG AAAAATTAATAGACTTACGAAATGAGTACCTGCAAGCAGATGAGACCAATAAAAGGTTTT TGGAGCAGAGGTATGGTAAGCGGGTGATTCAGAAGGCCCTGGAAGAGATGGAGAGCAAGG AGTGGCTAGAAAAGAACTCCAAGAGCTGCCCGTGCTGCGGGACTCCCATAGAGAAATTAG ACGGCTGTAACAAGATGACATGTACGGGCTGTATGCAGTACTTCTGCTGGATTTGCATGG GTTCCCTCTCTAGAGCAAACCCTTACAAACATTTCACTGATCCTGCCTCCCCATGTTTTA ACCGGTTGTTCCATGCCGTGGATGTTAACGGAGAGGTTTGGGAAGATGAGGCCGAAGACT AGCGAACACCTGCTGCTCAAGCGATGGCAGTGGAATGGTTTGCCCTAACTTGGCAGGATT TTTAGGGTACCATCGAGGTAGAAGATAGGGAAGAACAAGGTCTATGTTTTCATGTGATAC TACTGATTTAGCACATTCAGACATTTCTCATTGTAACATAATTGAGGAACTCTTAAGCCA AAGGTTTGGAAAATATTAAATATTACAGTGTGCCCGAAGCTTGAGTAGTGAAAAATTAAA TATTTATTTTCTTCCCCACGCTTAGGTCAGGAGAGAGAGGTCAAGATTTAAGCTCGCCGA CCTTTTTATCTCTGGGAAGCATCCCTCTAAGACCTTCTTGGGGAGCTCCCTCAGTCCTGC TCCTTACAGCCGGGCGGGCAGAGCCTTGTGAAAATTGTACCGAGAGCCTGGACTCGCTCC ACACTACATTCCCTCCAGCCCGAATTTTTGCAAAGTCACTTTTCTTCGGAGGAAGCCCTT TACTCCAGAACTGATTGGATGGCCCAGTGTCATTTCGATCGACTGCTTTTCAGAATAGAA ATCTACAGATAATTCAGATTTTTTTTTTTTGATACCACAGACACTGTGGGTCACTTGGTA TATTTATTAATGCTGTATAGTCCACCGGTTTTGAGCCACATCTTGAACGTACCGATACTG GCTCAGAAGCACTTCCACCCCATTCAGCCTCGCTGTTTCTTCTGGGCTGTAGAGCCTGGA TTCAGAGCAACTTGTCTTTGCTACCTTGGGTCCTGCCTTCTCTCCATTGACCTCAGCCTG CCTTTCATTGGTAAGGACAATGTTAATATTAGCTCCAGCAGCTCATATTTTTATTTCCTC TGCTGGGAAAGGAGAAAGTCTAATACGTTCCCACCTGAACAAGCTGAACTCTGTATATGC TTTTTGAACACGATAGCACCATACCTCCAGTGCTGACCTTCTGAATTCTGTTTAAAGGGC TTCTCTAATGAGCTGTGGACATTTGTCTTCCTCTCCTCGTTTTATTTTGCACCAGCAGTG TTCCAGGGGTCATTTTGGCTTGATACCTAGAGCCGTGTTTCCGGGTTTTGTTGGCTTTTT GCAAAATTCTTCCCTTCGGGTTTGGTGAGTGTCTTGGTAGCAGAGTAAGATGGGGGAAGA AAGGCCAGGGGATTCAGCTGCAGCCGTGCAGAAGCTCTTTTCTCCTTCCCTGTCATTGAA AAGTAGGGATCATCTGAAACCATTTTATGTGTGTGTTATCCAAAGACTGCGGACTGTTTC TGGATTGTCAATAAGGATGCTTAATCTTAAAAATAAAAATGATTTAAAAATTGTCTTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCTACCTGGATATCGTCTCTCCCTTCGAGCTCAGGCTGGGTTCTCAGAAAAAAGTGC AGAGAAGGGCGACTCAGGCCTCTTCCAGCCCCGAGCTAGATTTCGGAGGAGCTGCTGCCT TTGACCTAGACCAAGAGGAAGCTGTGGACGAGAGAGCCGTGCAGGATGTGGAGTCCTTGT CCAGTCTGATCCAGGAGATCTTGGACTTTGATCAAGCTCAGCAGATAAAATGCTTTAACA GTAAATTGTTCCTGTGCAATATCTGTTTCTGTGAGAAGCTGGGGAGCGAATGCATGTACT TCTTGGAGTGCAGGCATGTGTACTGCAAAGCCTGTCTCAAGGACTACTTTGAGATCCAGA TCAGAGATGGCCAAGTTCAGTGCCTCAACTGCCCAGAACCCAAGTGCCCTTCAGTGGCCA CTCCTGGTCAGGTCAAAGAGCTAGTGGACGCCGAGTTATTCGCCCGCTACGACCGCCTTC TCCTCCAGTCCACCCTGGACCTGATGGCAGACGTGGTGTACTGCCCCCGCCCGTGCTGCC AGCTGCCTGTGATGCAGGAGCCTGGCTGCACAATGGGCATCTGCTCCAGCTGTAATTTCG CCTTCTGTACACTCTGCAGATTGACCTACCATGGGGTCTCTCCGTGTAAGGTGACTGCAG AAAAATTAATAGACTTACGAAATGAGTACCTGCAAGCAGATGAGACCAATAAAAGGTTTT TGGAGCAGAGGTATGGTAAGCGGGTGATTCAGAAGGCCCTGGAAGAGATGGAGAGCAAGG AGTGGCTAGAAAAGAACTCCAAGAGCTGCCCGTGCTGCGGGACTCCCATAGAGAAATTAG ACGGCTGTAACAAGATGACATGTACGGGCTGTATGCAGTACTTCTGCTGGATTTGCATGG GTTCCCTCTCTAGAGCAAACCCTTACAAACATTTCACTGATCCTGCCTCCCCATGTTTTA ACCGGTTGTTCCATGCCGTGGATGTTAACGGAGAGGTTTGGGAAGATGAGGCCGAAGACT AGCGAACACCTGCTGCTCAAGCGATGGCAGTGGAATGGTTTGCCCTAACTTGGCAGGATT TTTAGGGTACCATCGAGGTAGAAGATAGGGAAGAACAAGGTCTATGTTTTCATGTGATAC TACTGATTTAGCACATTCAGACATTTCTCATTGTAACATAATTGAGGAACTCTTAAGCCA AAGGTTTGGAAAATATTAAATATTACAGTGTGCCCGAAGCTTGAGTAGTGAAAAATTAAA TATTTATTTTCTTCCCCACGCTTAGGTCAGGAGAGAGAGGTCAAGATTTAAGCTCGCCGA CCTTTTTATCTCTGGGAAGCATCCCTCTAAGACCTTCTTGGGGAGCTCCCTCAGTCCTGC TCCTTACAGCCGGGCGGGCAGAGCCTTGTGAAAATTGTACCGAGAGCCTGGACTCGCTCC ACACTACATTCCCTCCAGCCCGAATTTTTGCAAAGTCACTTTTCTTCGGAGGAAGCCCTT TACTCCAGAACTGATTGGATGGCCCAGTGTCATTTCGATCGACTGCTTTTCAGAATAGAA ATCTACAGATAATTCAGATTTTTTTTTTTTGATACCACAGACACTGTGGGTCACTTGGTA TATTTATTAATGCTGTATAGTCCACCGGTTTTGAGCCACATCTTGAACGTACCGATACTG GCTCAGAAGCACTTCCACCCCATTCAGCCTCGCTGTTTCTTCTGGGCTGTAGAGCCTGGA TTCAGAGCAACTTGTCTTTGCTACCTTGGGTCCTGCCTTCTCTCCATTGACCTCAGCCTG CCTTTCATTGGTAAGGACAATGTTAATATTAGCTCCAGCAGCTCATATTTTTATTTCCTC TGCTGGGAAAGGAGAAAGTCTAATACGTTCCCACCTGAACAAGCTGAACTCTGTATATGC TTTTTGAACACGATAGCACCATACCTCCAGTGCTGACCTTCTGAATTCTGTTTAAAGGGC TTCTCTAATGAGCTGTGGACATTTGTCTTCCTCTCCTCGTTTTATTTTGCACCAGCAGTG TTCCAGGGGTCATTTTGGCTTGATACCTAGAGCCGTGTTTCCGGGTTTTGTTGGCTTTTT GCAAAATTCTTCCCTTCGGGTTTGGTGAGTGTCTTGGTAGCAGAGTAAGATGGGGGAAGA AAGGCCAGGGGATTCAGCTGCAGCCGTGCAGAAGCTCTTTTCTCCTTCCCTGTCATTGAA AAGTAGGGATCATCTGAAACCATTTTATGTGTGTGTTATCCAAAGACTGCGGACTGTTTC TGGATTGTCAATAAGGATGCTTAATCTTAAAAATAAAAATGATTTAAAAATTGTCTTATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 239-1821, - strand, RNAz p=0.999985 | |
| 1279-1394, + strand, RNAz p=0.7899 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 239-1821, - strand, RNAz p=0.999985 | |
| 1279-1394, + strand, RNAz p=0.7899 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004290, + |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 3-433, gnl|bosTau2|chr7 (35796113-35795683) | |
| 3-433, gnl|Hg17|chr5 (141338151-141338581) | |
| 3-433, gnl|Mm7|chr18 (38684165-38684598) | |
| 659-833, gnl|bosTau2|chr7 (35791080-35790906) | |
| 659-833, gnl|canFam2|chr2 (39774857-39775089) | |
| 659-833, gnl|danRer3|chrNA (251226130-251225921) | |
| 659-833, gnl|dasNov1|scaffold_5958 (49614-49847) | |
| 659-833, gnl|echTel1|scaffold_291344 (26312-26081) | |
| 659-833, gnl|fr1|chrUn (207341419-207341617) | |
| 659-833, gnl|galGal2|chr13 (16193047-16193272) | |
| 659-833, gnl|hg17|chr5 (141343095-141343328) | |
| 659-833, gnl|Hg17|chr5 (141343127-141343301) | |
| 659-833, gnl|loxAfr1|scaffold_59479 (5652-5419) | |
| 659-833, gnl|mm7|chr18 (38689395-38689610) | |
| 659-833, gnl|Mm7|chr18 (38689411-38689585) | |
| 659-833, gnl|monDom2|scaffold_6 (66589987-66589757) | |
| 659-833, gnl|oryCun1|scaffold_188012 (90519-90302) | |
| 659-833, gnl|panTro1|chr4 (147984077-147984310) | |
| 659-833, gnl|rheMac2|chr6 (138398001-138398234) | |
| 659-833, gnl|tetNig1|chr7 (9023281-9023460) | |
| 659-833, gnl|xenTro1|scaffold_2012 (37234-37456) | |
| 964-1068, gnl|bosTau2|chr7 (35788201-35788097) | |
| 964-1068, gnl|canFam2|chr2 (39778435-39778282) | |
| 964-1068, gnl|canFam2|chr2 (39778255-39778435) | |
| 964-1068, gnl|dasNov1|scaffold_33509 (5766-5921) | |
| 964-1068, gnl|dasNov1|scaffold_5958 (52421-52604) | |
| 964-1068, gnl|echTel1|scaffold_291344 (21226-21357) | |
| 964-1068, gnl|echTel1|scaffold_291344 (21383-21226) | |
| 964-1068, gnl|fr1|chrUn (207341894-207342092) | |
| 964-1068, gnl|galGal2|chr13 (16194568-16194759) | |
| 964-1068, gnl|hg17|chr2 (139003275-139003428) | |
| 964-1068, gnl|hg17|chr5 (141347455-141347634) | |
| 964-1068, gnl|Hg17|chr5 (141347481-141347582) | |
| 964-1068, gnl|loxAfr1|scaffold_59479 (2047-2200) | |
| 964-1068, gnl|loxAfr1|scaffold_59479 (2226-2047) | |
| 964-1068, gnl|mm7|chr18 (38692910-38692726) | |
| 964-1068, gnl|mm7|chr18 (38692695-38692910) | |
| 964-1068, gnl|Mm7|chr18 (38692725-38692859) | |
| 964-1068, gnl|monDom2|scaffold_6 (66587309-66587465) | |
| 964-1068, gnl|monDom2|scaffold_6 (66587493-66587309) | |
| 964-1068, gnl|oryCun1|scaffold_132732 (15744-15598) | |
| 964-1068, gnl|oryCun1|scaffold_188012 (85750-85568) | |
| 964-1068, gnl|panTro1|chr13 (28019342-28019495) | |
| 964-1068, gnl|panTro1|chr4 (147988428-147988607) | |
| 964-1068, gnl|rheMac2|chr12 (1859993-1860146) | |
| 964-1068, gnl|rheMac2|chr6 (138403186-138403365) | |
| 964-1068, gnl|xenTro1|scaffold_2012 (37947-37811) | |
| 1098-2340, gnl|bosTau2|chr7 (35788030-35786764) | |
| 1098-2340, gnl|Hg17|chr5 (141347649-141348931) | |
| 1098-2340, gnl|Mm7|chr18 (38692925-38694044) | |
| 1216-1715, gnl|bosTau2|chr13 (42253419-42253898) | |
| 1216-1715, gnl|Hg17|chr2 (139003124-139002625) | |
| 1216-1715, gnl|Mm7|chr18 (38693047-38693492) | |
| 1811-2322, gnl|bosTau2|chr13 (42254159-42254675) | |
| 1811-2322, gnl|Hg17|chr2 (139002538-139001983) | |
| 1811-2322, gnl|Mm7|chr18 (38693564-38694023) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-433, gnl|bosTau2|chr7 (35796113-35795683) | |
| 3-433, gnl|Hg17|chr5 (141338151-141338581) | |
| 3-433, gnl|Mm7|chr18 (38684165-38684598) | |
| 659-833, gnl|bosTau2|chr7 (35791080-35790906) | |
| 659-833, gnl|canFam2|chr2 (39774857-39775089) | |
| 659-833, gnl|danRer3|chrNA (251226130-251225921) | |
| 659-833, gnl|dasNov1|scaffold_5958 (49614-49847) | |
| 659-833, gnl|echTel1|scaffold_291344 (26312-26081) | |
| 659-833, gnl|fr1|chrUn (207341419-207341617) | |
| 659-833, gnl|galGal2|chr13 (16193047-16193272) | |
| 659-833, gnl|hg17|chr5 (141343095-141343328) | |
| 659-833, gnl|Hg17|chr5 (141343127-141343301) | |
| 659-833, gnl|loxAfr1|scaffold_59479 (5652-5419) | |
| 659-833, gnl|mm7|chr18 (38689395-38689610) | |
| 659-833, gnl|Mm7|chr18 (38689411-38689585) | |
| 659-833, gnl|monDom2|scaffold_6 (66589987-66589757) | |
| 659-833, gnl|oryCun1|scaffold_188012 (90519-90302) | |
| 659-833, gnl|panTro1|chr4 (147984077-147984310) | |
| 659-833, gnl|rheMac2|chr6 (138398001-138398234) | |
| 659-833, gnl|tetNig1|chr7 (9023281-9023460) | |
| 659-833, gnl|xenTro1|scaffold_2012 (37234-37456) | |
| 964-1068, gnl|bosTau2|chr7 (35788201-35788097) | |
| 964-1068, gnl|canFam2|chr2 (39778435-39778282) | |
| 964-1068, gnl|canFam2|chr2 (39778255-39778435) | |
| 964-1068, gnl|dasNov1|scaffold_33509 (5766-5921) | |
| 964-1068, gnl|dasNov1|scaffold_5958 (52421-52604) | |
| 964-1068, gnl|echTel1|scaffold_291344 (21226-21357) | |
| 964-1068, gnl|echTel1|scaffold_291344 (21383-21226) | |
| 964-1068, gnl|fr1|chrUn (207341894-207342092) | |
| 964-1068, gnl|galGal2|chr13 (16194568-16194759) | |
| 964-1068, gnl|hg17|chr2 (139003275-139003428) | |
| 964-1068, gnl|hg17|chr5 (141347455-141347634) | |
| 964-1068, gnl|Hg17|chr5 (141347481-141347582) | |
| 964-1068, gnl|loxAfr1|scaffold_59479 (2047-2200) | |
| 964-1068, gnl|loxAfr1|scaffold_59479 (2226-2047) | |
| 964-1068, gnl|mm7|chr18 (38692910-38692726) | |
| 964-1068, gnl|mm7|chr18 (38692695-38692910) | |
| 964-1068, gnl|Mm7|chr18 (38692725-38692859) | |
| 964-1068, gnl|monDom2|scaffold_6 (66587309-66587465) | |
| 964-1068, gnl|monDom2|scaffold_6 (66587493-66587309) | |
| 964-1068, gnl|oryCun1|scaffold_132732 (15744-15598) | |
| 964-1068, gnl|oryCun1|scaffold_188012 (85750-85568) | |
| 964-1068, gnl|panTro1|chr13 (28019342-28019495) | |
| 964-1068, gnl|panTro1|chr4 (147988428-147988607) | |
| 964-1068, gnl|rheMac2|chr12 (1859993-1860146) | |
| 964-1068, gnl|rheMac2|chr6 (138403186-138403365) | |
| 964-1068, gnl|xenTro1|scaffold_2012 (37947-37811) | |
| 1098-2340, gnl|bosTau2|chr7 (35788030-35786764) | |
| 1098-2340, gnl|Hg17|chr5 (141347649-141348931) | |
| 1098-2340, gnl|Mm7|chr18 (38692925-38694044) | |
| 1216-1715, gnl|bosTau2|chr13 (42253419-42253898) | |
| 1216-1715, gnl|Hg17|chr2 (139003124-139002625) | |
| 1216-1715, gnl|Mm7|chr18 (38693047-38693492) | |
| 1811-2322, gnl|bosTau2|chr13 (42254159-42254675) | |
| 1811-2322, gnl|Hg17|chr2 (139002538-139001983) | |
| 1811-2322, gnl|Mm7|chr18 (38693564-38694023) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cmu (0.745573) | |
| tes (0.415628) | |
| ste (0.405625) | |
| pla (0.401016) | |
| sme (0.305437) | |
| cte (0.29274) | |
| spl (0.286369) | |
| kid (0.259471) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| lun (0.150489) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.745573) | |
| tes (0.415628) | |
| ste (0.405625) | |
| pla (0.401016) | |
| sme (0.305437) | |
| cte (0.29274) | |
| spl (0.286369) | |
| kid (0.259471) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| lun (0.150489) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |