Non-Coding RNA Search

Ss1.1-Pig4-TMW8025M04.5

Sequence:


               
               TCGAGGGGAAAAGAGGAAACGAGATGCTGAAGATGATGGAGAGGAAGAAGATGACTAGAT
CATCCTAAGACAAGATTCCCTAACGTTCCTGGGTGTGCAAAAGAGTGATCACATCTTCTT
TGTTTCTTCATGTACGATAGCTATCCTTACAGAAGATAATGTGTAACTTTTTATAGGAAA
AGTGTGGTTTTACTATTTTTGCCTTATCATTCCAAATAAGATTAACTAGTCTGTTAATGA
TCATATTGTAAGTAGAGAAATCTTCATTGACCCCATTGTGAAATTCCCTAGCAATTTATT
TAGAATCTTAACTTTTCTAATTAAAGCTCACTGTATTAGCCAATTTTAGCATAATTAAAA
CGATCGCTTTTACACAGTGTAGTATGGTGCATTTCATTCATAAGGTTTTAAAGTTATTTA
TAAATTAACCGAAATCACAGTTGGCTGGAATCTGGAATGAAAATAGTCTCTTGAATGATA
GCTTGGTTATTTTATTAGAGGTGACCCAGAGATCTTGTAGTTTGAAGGCAATGACTTTTG
GCTGAGGGTGTTTGGGGTTGCTTTTTCTCACATGAATGGTTTGGAAAGTAGGAGCAGAAT
AGTAAAGGTTCTATTCAAGAATATAGTTCATGGCTTTTATGGAGGTTTCTGAAACCTTTT
AAAGCCAGGTGACTAATAAGATTTTAGTTTTGAAGAAAAAATTGCTTATACTGAGGTCGG
AGACATGTAGATGTAAGACCTCTCCTGAAGCTGAAGATCATGACATGCCAACTGTTGTGT
ATCTTGTTTTAAGTGTGCATTCTTTGTTTTCCTCTCAGTGATCACCTCCCTTCCTTGTTT
TACGTCCTTCCTAAAAAAGAGTTGGGAAACTTAGAGATACCCAGGACAACTTTGTCTTAT
ACCTCAGCCACCTTTCCAACCTGTCTCAGTTTTAAACAAGCTAAGTGAAAGAAATTGAGT
ATTTTCTCAGATACAAATATTATAAGTACAGTTTTATGCAATGGACTGCTTACTATAAAT
CTTGGTTGGCAAGATGTATAGACTGTATTAGAAGGATGAAGAAAGAAAAGAAACAGAAGA
GCCTCTTGGAAGCAGCATTAGTGTTCCTCAAAAGTCAGAACAATTGCCTGTTGATAATGA
ATGAGACATTCAAATCAGAGTAGCTTCCCAAATGATTTAGATACCACTCTGTTTCTAATC
TTTCTGAGTAGACCCTTTAATTATTCTCTCTATAGTTTTAAAGCATTACCAGGTATAGCA
TTTAATTGGAATTTACTGGATATTTGGAAAGATGTTTGAAACTAAATATTAAAATTTCAA
TTTGTTTTCAAGTGGATGTCCATTAAAAATAGAAAAATATCTGGGATTAAGTGTGAGTGT
GTGTTTTCTTACATGGCTACTAAATATAATATTGTATGAGTAGACAAGTACCTCTCCCTT
TTTTTGTTGTTGTGGAGGCTCCATGTTCAAGGCAGTTACTTTTTACATCTTGGCTATCAA
ATTTTTTCTGCCTTCATTTTGAATATTTGTAAGTTTTTTAAAAAGTTAGTATCAAATTAA
TTGAAATTGCACTTCCAGACTTGGATGTGTTTATATTACTGAGTATGGTATTGCTTCTCT
TTTTTAGTTCGAAATGTATGACTTGGAGTTTTAAAGTGAAAAATGACAAAGTTATTTGTG
GATAAAAAGGTTGCATAACTGAAAACTGTTGGTATACGTTTAATGTGGGGGTTAGAATCT
CCAAAAGGCTAACATTTTACTCTTTCAAAACAATTATAATGCCCTGTTTTAGTCCCTAAA
AATTCTCATTGCAGAGTATGCCAGCTTATAAAATTCTTATTTTAAAAATTAAATCTATAT
GTTGACTTCCTTATCAATCATCTTGTTGTGCAATCAAAATTAGAGTTCTTTGATTTGAAA
ACAACACTTAGAGCCTCCAAATAACTTTAAGATTTGTTTAGCTTTGTGGGTGGTATTTTC
ATGTGAATAAGTAAGGGTGGGTTTTATATCTTATAGAAGTTTTTGGTCCTATTTTAATGC
TCTTTGTATGGCAGTATGTATATAGTGTGCTAAATTCCTCAAAGCTCTCCTTAAAAACTT
TGAAGTTAATACTTTTGTGCAACTGTGTTTTGAATAAAGCCATGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGGGGAAAAGAGGAAACGAGATGCTGAAGATGATGGAGAGGAAGAAGATGACTAGAT
CATCCTAAGACAAGATTCCCTAACGTTCCTGGGTGTGCAAAAGAGTGATCACATCTTCTT
TGTTTCTTCATGTACGATAGCTATCCTTACAGAAGATAATGTGTAACTTTTTATAGGAAA
AGTGTGGTTTTACTATTTTTGCCTTATCATTCCAAATAAGATTAACTAGTCTGTTAATGA
TCATATTGTAAGTAGAGAAATCTTCATTGACCCCATTGTGAAATTCCCTAGCAATTTATT
TAGAATCTTAACTTTTCTAATTAAAGCTCACTGTATTAGCCAATTTTAGCATAATTAAAA
CGATCGCTTTTACACAGTGTAGTATGGTGCATTTCATTCATAAGGTTTTAAAGTTATTTA
TAAATTAACCGAAATCACAGTTGGCTGGAATCTGGAATGAAAATAGTCTCTTGAATGATA
GCTTGGTTATTTTATTAGAGGTGACCCAGAGATCTTGTAGTTTGAAGGCAATGACTTTTG
GCTGAGGGTGTTTGGGGTTGCTTTTTCTCACATGAATGGTTTGGAAAGTAGGAGCAGAAT
AGTAAAGGTTCTATTCAAGAATATAGTTCATGGCTTTTATGGAGGTTTCTGAAACCTTTT
AAAGCCAGGTGACTAATAAGATTTTAGTTTTGAAGAAAAAATTGCTTATACTGAGGTCGG
AGACATGTAGATGTAAGACCTCTCCTGAAGCTGAAGATCATGACATGCCAACTGTTGTGT
ATCTTGTTTTAAGTGTGCATTCTTTGTTTTCCTCTCAGTGATCACCTCCCTTCCTTGTTT
TACGTCCTTCCTAAAAAAGAGTTGGGAAACTTAGAGATACCCAGGACAACTTTGTCTTAT
ACCTCAGCCACCTTTCCAACCTGTCTCAGTTTTAAACAAGCTAAGTGAAAGAAATTGAGT
ATTTTCTCAGATACAAATATTATAAGTACAGTTTTATGCAATGGACTGCTTACTATAAAT
CTTGGTTGGCAAGATGTATAGACTGTATTAGAAGGATGAAGAAAGAAAAGAAACAGAAGA
GCCTCTTGGAAGCAGCATTAGTGTTCCTCAAAAGTCAGAACAATTGCCTGTTGATAATGA
ATGAGACATTCAAATCAGAGTAGCTTCCCAAATGATTTAGATACCACTCTGTTTCTAATC
TTTCTGAGTAGACCCTTTAATTATTCTCTCTATAGTTTTAAAGCATTACCAGGTATAGCA
TTTAATTGGAATTTACTGGATATTTGGAAAGATGTTTGAAACTAAATATTAAAATTTCAA
TTTGTTTTCAAGTGGATGTCCATTAAAAATAGAAAAATATCTGGGATTAAGTGTGAGTGT
GTGTTTTCTTACATGGCTACTAAATATAATATTGTATGAGTAGACAAGTACCTCTCCCTT
TTTTTGTTGTTGTGGAGGCTCCATGTTCAAGGCAGTTACTTTTTACATCTTGGCTATCAA
ATTTTTTCTGCCTTCATTTTGAATATTTGTAAGTTTTTTAAAAAGTTAGTATCAAATTAA
TTGAAATTGCACTTCCAGACTTGGATGTGTTTATATTACTGAGTATGGTATTGCTTCTCT
TTTTTAGTTCGAAATGTATGACTTGGAGTTTTAAAGTGAAAAATGACAAAGTTATTTGTG
GATAAAAAGGTTGCATAACTGAAAACTGTTGGTATACGTTTAATGTGGGGGTTAGAATCT
CCAAAAGGCTAACATTTTACTCTTTCAAAACAATTATAATGCCCTGTTTTAGTCCCTAAA
AATTCTCATTGCAGAGTATGCCAGCTTATAAAATTCTTATTTTAAAAATTAAATCTATAT
GTTGACTTCCTTATCAATCATCTTGTTGTGCAATCAAAATTAGAGTTCTTTGATTTGAAA
ACAACACTTAGAGCCTCCAAATAACTTTAAGATTTGTTTAGCTTTGTGGGTGGTATTTTC
ATGTGAATAAGTAAGGGTGGGTTTTATATCTTATAGAAGTTTTTGGTCCTATTTTAATGC
TCTTTGTATGGCAGTATGTATATAGTGTGCTAAATTCCTCAAAGCTCTCCTTAAAAACTT
TGAAGTTAATACTTTTGTGCAACTGTGTTTTGAATAAAGCCATGACAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               593-712, - strand, RNAz p=0.578834
               

               
               933-1112, + strand, RNAz p=0.763474

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               593-712, - strand, RNAz p=0.578834
               

               
               933-1112, + strand, RNAz p=0.763474

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               131-1112, gnl|bosTau2|chr3 (17236349-17237344)
               

               
               131-1112, gnl|Hg17|chr1 (147005996-147004982)
               


               
               1193-2148, gnl|bosTau2|chr3 (17237792-17238735)
               

               
               1193-2148, gnl|Hg17|chr1 (147004885-147003938)
               

               
               1193-2148, gnl|Mm7|chr3 (95820249-95821212)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-1112, gnl|bosTau2|chr3 (17236349-17237344)
               

               
               131-1112, gnl|Hg17|chr1 (147005996-147004982)
               


               
               1193-2148, gnl|bosTau2|chr3 (17237792-17238735)
               

               
               1193-2148, gnl|Hg17|chr1 (147004885-147003938)
               

               
               1193-2148, gnl|Mm7|chr3 (95820249-95821212)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               spl (0.429553)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	593-712, - strand, RNAz p=0.578834
	933-1112, + strand, RNAz p=0.763474

	131-1112, gnl\|bosTau2\|chr3 (17236349-17237344)
	131-1112, gnl\|Hg17\|chr1 (147005996-147004982)

	1193-2148, gnl\|bosTau2\|chr3 (17237792-17238735)
	1193-2148, gnl\|Hg17\|chr1 (147004885-147003938)
	1193-2148, gnl\|Mm7\|chr3 (95820249-95821212)

	spl (0.429553)
	vin (0.332557)
	liv (0.292569)
	fcc (0.197785)
	nep (0.183925)
	eye (0.170503)
	tbr (0.154178)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	ste (0.135208)
	nmm (0.132802)
	ova (0.129132)
	tra (0.123092)
	med (0.116252)
	cbl (0.114797)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)