Non-Coding RNA Search

Ss1.1-Pig4-TMW8025M05.3

Sequence:


               
               CGGTGGCCGGGTCAGCGGCACCACCCCCACCTCCTCCACCTCCACCTCCACCGGGGCCAC
CACCTCCCCCCGGCCTCCCTTCTGATGGTGACCATCAAGTTCCAACTCCTGCTGGAAGCA
AAGCAGCTCTTTTAGATCAAATTAGAGAGGGTGCTCAGCTTAAAAAAGTGGAACAGAACA
GTCGACCGGTGTCCTGCTCTGGAAGGGATGCACTTTTAGACCAGATACGACAGGGTATTC
AGCTGAAATCTGTATCTGATGGCCAAGAATCTACACCGCCGACTCCTGCACCCACTTCAG
GAATTGTAGGTGCATTAATGGAAGTGATGCAGAAAAGGAGCAAAGCCATTCATTCTTCAG
ATGAAGATGAGGATGAGGATGATGAAGAAGATTTTGAGGATGATGATGAATGGGAAGACT
GATCTATATATTATATATATATTTTTAAGGTGAAACACTAAACACTACTTTCTGTCTATG
GATTCTGTAAAATTATCATGTAAATGTTCTACCAATTTGCTGTATATTTTTGTTGCCTTT
TTTGCTTTTTTTTATTAATCTGTGCAATACCTCATTTAATCTGTAAAGGTTTGTCATAAT
CCTCTGCAAAGCTACTCCCTGGTACTGTGTGCACGTTTACACCAGGTTGCTCACTTAATT
TTGTGAATATTTTTCATTCCATCAACAAGGGAGTTTAAATATTATATGTGAGACTGACAA
AAACCTTAATGTAATTTAGTTATAATGCCAGAAGGAAAACACTATTTTCATACCCTACTT
TTTCTGTACCTAAATTTTCTTATTAAAATCTAGTATAGCACTACATTCTTTTTTAAGTGA
TACAAACCTTAGTTTATTTAGCCCCTTCATTTTGAACACATGCTACATGAATGTCGAAGC
TGATACATTGCACAGTTCTCTAGACATCACTACACTGATGCAATTCAAATTTTAGCAATA
TGCTCTATGTAAAATCACTACAGAGATGCTAGTTGGGAAAATGAGTAACACACCTCTTAC
AGCAATATTGCCTGTTACTGTACAGAAGTGGTGTTTGGAGGCTGGAATCATAAGGAGCCC
TTGCATACCTGTTCTTGACTGAGGTTATTTTTATGCTAGAGCAAATGTGGCAGGCTCTTT
GGCAAAAATTTCAAAAATATTTTTGGTATTATTCTGAAACAAAAGTTAAGTTGTTGAAGT
TTAGGAGATCTTAGGGATAATTTCATTCTACATGAACTGAAGGAGGTGATACATTATGAT
GACTTCAATATTTGGCTAAATATACTATAAAAATCAGAACATTATAAAAATATGTGGAAT
TTAGGTATTTTTATTTTACAGTGTGTAAGGACTGAGGTATTGAGCAATACCAACCATAAA
AATCTCACCTAATTGGCAAAGGTATATACACTGTAATGCTGAAATTATTATGCTATTTTT
TAAAATTTTGATAATTTCTCAAGGTTTTTGTCAAATGTCAGGTGAAGGGTTACATTTTTC
TTAAAAGATTGGTGGTCCCAATGTCAAATTTATTGAAAACACAAAACTGAATGATAGGGT
TTTGTTTTGTTTTTTTTTAAGAATAAAACTTTACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGCCGGGTCAGCGGCACCACCCCCACCTCCTCCACCTCCACCTCCACCGGGGCCAC
CACCTCCCCCCGGCCTCCCTTCTGATGGTGACCATCAAGTTCCAACTCCTGCTGGAAGCA
AAGCAGCTCTTTTAGATCAAATTAGAGAGGGTGCTCAGCTTAAAAAAGTGGAACAGAACA
GTCGACCGGTGTCCTGCTCTGGAAGGGATGCACTTTTAGACCAGATACGACAGGGTATTC
AGCTGAAATCTGTATCTGATGGCCAAGAATCTACACCGCCGACTCCTGCACCCACTTCAG
GAATTGTAGGTGCATTAATGGAAGTGATGCAGAAAAGGAGCAAAGCCATTCATTCTTCAG
ATGAAGATGAGGATGAGGATGATGAAGAAGATTTTGAGGATGATGATGAATGGGAAGACT
GATCTATATATTATATATATATTTTTAAGGTGAAACACTAAACACTACTTTCTGTCTATG
GATTCTGTAAAATTATCATGTAAATGTTCTACCAATTTGCTGTATATTTTTGTTGCCTTT
TTTGCTTTTTTTTATTAATCTGTGCAATACCTCATTTAATCTGTAAAGGTTTGTCATAAT
CCTCTGCAAAGCTACTCCCTGGTACTGTGTGCACGTTTACACCAGGTTGCTCACTTAATT
TTGTGAATATTTTTCATTCCATCAACAAGGGAGTTTAAATATTATATGTGAGACTGACAA
AAACCTTAATGTAATTTAGTTATAATGCCAGAAGGAAAACACTATTTTCATACCCTACTT
TTTCTGTACCTAAATTTTCTTATTAAAATCTAGTATAGCACTACATTCTTTTTTAAGTGA
TACAAACCTTAGTTTATTTAGCCCCTTCATTTTGAACACATGCTACATGAATGTCGAAGC
TGATACATTGCACAGTTCTCTAGACATCACTACACTGATGCAATTCAAATTTTAGCAATA
TGCTCTATGTAAAATCACTACAGAGATGCTAGTTGGGAAAATGAGTAACACACCTCTTAC
AGCAATATTGCCTGTTACTGTACAGAAGTGGTGTTTGGAGGCTGGAATCATAAGGAGCCC
TTGCATACCTGTTCTTGACTGAGGTTATTTTTATGCTAGAGCAAATGTGGCAGGCTCTTT
GGCAAAAATTTCAAAAATATTTTTGGTATTATTCTGAAACAAAAGTTAAGTTGTTGAAGT
TTAGGAGATCTTAGGGATAATTTCATTCTACATGAACTGAAGGAGGTGATACATTATGAT
GACTTCAATATTTGGCTAAATATACTATAAAAATCAGAACATTATAAAAATATGTGGAAT
TTAGGTATTTTTATTTTACAGTGTGTAAGGACTGAGGTATTGAGCAATACCAACCATAAA
AATCTCACCTAATTGGCAAAGGTATATACACTGTAATGCTGAAATTATTATGCTATTTTT
TAAAATTTTGATAATTTCTCAAGGTTTTTGTCAAATGTCAGGTGAAGGGTTACATTTTTC
TTAAAAGATTGGTGGTCCCAATGTCAAATTTATTGAAAACACAAAACTGAATGATAGGGT
TTTGTTTTGTTTTTTTTTAAGAATAAAACTTTACAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q80VV6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80VV6_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               582-701, - strand, RNAz p=0.723364
               

               
               782-896, - strand, RNAz p=0.51878

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               582-701, - strand, RNAz p=0.723364
               

               
               782-896, - strand, RNAz p=0.51878

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-254, gnl|bosTau2|chr24 (7294365-7294114)
               

               
               3-254, gnl|Hg17|chr7 (122926600-122926349)
               

               
               3-254, gnl|Mm7|chr6 (24562699-24562448)
               


               
               354-1563, gnl|bosTau2|chr24 (7284104-7282895)
               

               
               354-1563, gnl|Hg17|chr7 (122918593-122917387)
               

               
               354-1563, gnl|Mm7|chr6 (24559620-24558454)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-254, gnl|bosTau2|chr24 (7294365-7294114)
               

               
               3-254, gnl|Hg17|chr7 (122926600-122926349)
               

               
               3-254, gnl|Mm7|chr6 (24562699-24562448)
               


               
               354-1563, gnl|bosTau2|chr24 (7284104-7282895)
               

               
               354-1563, gnl|Hg17|chr7 (122918593-122917387)
               

               
               354-1563, gnl|Mm7|chr6 (24559620-24558454)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ste (0.405625)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

	582-701, - strand, RNAz p=0.723364
	782-896, - strand, RNAz p=0.51878

	3-254, gnl\|bosTau2\|chr24 (7294365-7294114)
	3-254, gnl\|Hg17\|chr7 (122926600-122926349)
	3-254, gnl\|Mm7\|chr6 (24562699-24562448)

	354-1563, gnl\|bosTau2\|chr24 (7284104-7282895)
	354-1563, gnl\|Hg17\|chr7 (122918593-122917387)
	354-1563, gnl\|Mm7\|chr6 (24559620-24558454)

	ste (0.405625)
	isp (0.300752)
	cte (0.29274)
	kid (0.259471)
	jej (0.197844)
	ldo (0.194005)
	fty (0.17584)
	rec (0.17307)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	ret (0.128733)