Ss1.1-Pig4-TMW8025M10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGTGAAAGAAAGAACATCAGATACCAAGCCAACAAGAGTAGTAAGGAAGAGAACGGCA CCAGAGGACTTCCTAGGGAAAGGACCCAACAAAAAAATTCTGATGGGAAATGAAGAGTTA ACAAGGCTTTGGAATCTCTGTCCTGATAACATGGAAGCCTGTAAATCAGAGACAAGGGAA TACATGCCAACTTTGGAGGAATTCTTTGAAGAAGCCATTGAACAGGCAGACCCTGAAAAC ATGGTTGAAAATGAGTACAAGGCTGTGAACAATTCAAATTACGGTTGGAGAGCCCTGAGA CTGTTAGCTCGGAGAAGCCCTCACTTCTTCCAGCCAACCAACCAGCAGTTCAAAAGTTTG CCAGAATATCTTGAAAACATGGTAATAAAGCTAGCCAAGGAATTACCACCTCCTTCTGAA GAAATAAAAACAGGTGAGGATGAAGATGAGGAAGATAATGATGCTTTACTGAAGGAAAAT GAAAGTCCTGATGTTCGACGAGACAAACCTGTAACAGGGGACCAAATAGAAGTATTTGCT AACAAATTGGGTGAACAATGGAAGATTCTGGCTCCCTACCTGGAAATGAAAGACTCAGAA ATTAGACAGATTGAGTGTGACAGCGAAGACATGAAGATGCGAGCTAAGCAGCTCCTAGTG GCCTGGCAGGATCAGGAGGGCGTGCACGCAACACCTGAGAACCTCATCAGTGCACTCAAC AAGTCCGGATTAAGTGACCTTGCAGAAAGTCTAACTAATGACAATGAGACAAATAGTTAG CTTCTTTTTTTTATTATTAAAACTGTGATAAGATTTTGTTACCAAGCAGCATTTGATAAG AGGTCCACTGGTTTTGGTAAACAATAAACATTTTTATAACAGTTGTTGTACAGTGGCTGG TGCTCCAAAAACAACAGAATGCATACTGGCTCTTGATGACTGACCTCAGGGTTGGGGGGA AAGGGAGGGAAGTTGGGGAAATGGCCAAAATAAAGTGACCTCAAGGTCACATAATATTTT TGTCAAACACATTTTTAATGAAGTCAGTAAGCAATATTTAGGGGCATGGCGTTTCCTAAG ATACACTATGCCAAATTAGTTTCCCACATGCTATTAGTAATTAAAAAATTTAACTTGTTG TCTTGAAAATCCCACAAAGCAGAGGCTCAACAAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGTGAAAGAAAGAACATCAGATACCAAGCCAACAAGAGTAGTAAGGAAGAGAACGGCA CCAGAGGACTTCCTAGGGAAAGGACCCAACAAAAAAATTCTGATGGGAAATGAAGAGTTA ACAAGGCTTTGGAATCTCTGTCCTGATAACATGGAAGCCTGTAAATCAGAGACAAGGGAA TACATGCCAACTTTGGAGGAATTCTTTGAAGAAGCCATTGAACAGGCAGACCCTGAAAAC ATGGTTGAAAATGAGTACAAGGCTGTGAACAATTCAAATTACGGTTGGAGAGCCCTGAGA CTGTTAGCTCGGAGAAGCCCTCACTTCTTCCAGCCAACCAACCAGCAGTTCAAAAGTTTG CCAGAATATCTTGAAAACATGGTAATAAAGCTAGCCAAGGAATTACCACCTCCTTCTGAA GAAATAAAAACAGGTGAGGATGAAGATGAGGAAGATAATGATGCTTTACTGAAGGAAAAT GAAAGTCCTGATGTTCGACGAGACAAACCTGTAACAGGGGACCAAATAGAAGTATTTGCT AACAAATTGGGTGAACAATGGAAGATTCTGGCTCCCTACCTGGAAATGAAAGACTCAGAA ATTAGACAGATTGAGTGTGACAGCGAAGACATGAAGATGCGAGCTAAGCAGCTCCTAGTG GCCTGGCAGGATCAGGAGGGCGTGCACGCAACACCTGAGAACCTCATCAGTGCACTCAAC AAGTCCGGATTAAGTGACCTTGCAGAAAGTCTAACTAATGACAATGAGACAAATAGTTAG CTTCTTTTTTTTATTATTAAAACTGTGATAAGATTTTGTTACCAAGCAGCATTTGATAAG AGGTCCACTGGTTTTGGTAAACAATAAACATTTTTATAACAGTTGTTGTACAGTGGCTGG TGCTCCAAAAACAACAGAATGCATACTGGCTCTTGATGACTGACCTCAGGGTTGGGGGGA AAGGGAGGGAAGTTGGGGAAATGGCCAAAATAAAGTGACCTCAAGGTCACATAATATTTT TGTCAAACACATTTTTAATGAAGTCAGTAAGCAATATTTAGGGGCATGGCGTTTCCTAAG ATACACTATGCCAAATTAGTTTCCCACATGCTATTAGTAATTAAAAAATTTAACTTGTTG TCTTGAAAATCCCACAAAGCAGAGGCTCAACAAACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 13-128, gnl|bosTau2|chr24 (25588452-25588339) | |
| 13-128, gnl|Hg17|chr18 (214181-214068) | |
| 13-128, gnl|Mm7|chr18 (10193618-10193731) | |
| 256-408, gnl|bosTau2|chr24 (25584968-25584816) | |
| 256-408, gnl|canFam2|chr7 (70125121-70125289) | |
| 256-408, gnl|danRer3|chrNA (178469895-178470060) | |
| 256-408, gnl|dasNov1|scaffold_48224 (4013-4181) | |
| 256-408, gnl|echTel1|scaffold_245075 (1758-1926) | |
| 256-408, gnl|fr1|chrUn (196712877-196712721) | |
| 256-408, gnl|galGal2|chr2 (101351000-101350836) | |
| 256-408, gnl|hg17|chr18 (206476-206644) | |
| 256-408, gnl|Hg17|chr18 (206638-206486) | |
| 256-408, gnl|loxAfr1|scaffold_27140 (35576-35744) | |
| 256-408, gnl|mm7|chr18 (10198837-10198669) | |
| 256-408, gnl|Mm7|chr18 (10198673-10198825) | |
| 256-408, gnl|monDom2|scaffold_21 (35403114-35402946) | |
| 256-408, gnl|oryCun1|scaffold_178278 (6916-7084) | |
| 256-408, gnl|panTro1|chr17 (12596740-12596572) | |
| 256-408, gnl|rheMac2|chr18 (13855643-13855475) | |
| 256-408, gnl|rn3|chr18 (1289757-1289589) | |
| 256-408, gnl|tetNig1|chr15_random (1297568-1297406) | |
| 256-408, gnl|xenTro1|scaffold_549 (664145-664306) | |
| 485-992, gnl|bosTau2|chr24 (25583537-25583033) | |
| 485-992, gnl|Hg17|chr18 (204921-204401) | |
| 485-992, gnl|Mm7|chr18 (10199871-10200380) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-128, gnl|bosTau2|chr24 (25588452-25588339) | |
| 13-128, gnl|Hg17|chr18 (214181-214068) | |
| 13-128, gnl|Mm7|chr18 (10193618-10193731) | |
| 256-408, gnl|bosTau2|chr24 (25584968-25584816) | |
| 256-408, gnl|canFam2|chr7 (70125121-70125289) | |
| 256-408, gnl|danRer3|chrNA (178469895-178470060) | |
| 256-408, gnl|dasNov1|scaffold_48224 (4013-4181) | |
| 256-408, gnl|echTel1|scaffold_245075 (1758-1926) | |
| 256-408, gnl|fr1|chrUn (196712877-196712721) | |
| 256-408, gnl|galGal2|chr2 (101351000-101350836) | |
| 256-408, gnl|hg17|chr18 (206476-206644) | |
| 256-408, gnl|Hg17|chr18 (206638-206486) | |
| 256-408, gnl|loxAfr1|scaffold_27140 (35576-35744) | |
| 256-408, gnl|mm7|chr18 (10198837-10198669) | |
| 256-408, gnl|Mm7|chr18 (10198673-10198825) | |
| 256-408, gnl|monDom2|scaffold_21 (35403114-35402946) | |
| 256-408, gnl|oryCun1|scaffold_178278 (6916-7084) | |
| 256-408, gnl|panTro1|chr17 (12596740-12596572) | |
| 256-408, gnl|rheMac2|chr18 (13855643-13855475) | |
| 256-408, gnl|rn3|chr18 (1289757-1289589) | |
| 256-408, gnl|tetNig1|chr15_random (1297568-1297406) | |
| 256-408, gnl|xenTro1|scaffold_549 (664145-664306) | |
| 485-992, gnl|bosTau2|chr24 (25583537-25583033) | |
| 485-992, gnl|Hg17|chr18 (204921-204401) | |
| 485-992, gnl|Mm7|chr18 (10199871-10200380) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cmu (1.11836) | |
| gul (0.887942) | |
| cbe (0.717703) | |
| cte (0.58548) | |
| spc (0.340097) | |
| cje (0.330469) | |
| lin (0.291206) | |
| che (0.272628) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ret (0.128733) | |
| tra (0.123092) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (1.11836) | |
| gul (0.887942) | |
| cbe (0.717703) | |
| cte (0.58548) | |
| spc (0.340097) | |
| cje (0.330469) | |
| lin (0.291206) | |
| che (0.272628) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ret (0.128733) | |
| tra (0.123092) |