Non-Coding RNA Search

Ss1.1-Pig4-TMW8025M11.5.5

Sequence:


               
               TTTACCTGTACCGGGGGGACTAGATTACTCCGTCCTTATTTCTGCAGTTTTGAGTCTTCA
TAGTGTCAATCCCCAGCAGAATCTGTCAGGGACAAACGTGTATGCTTAGTAATCAAAGTA
GGCATTGTGCAGTTAATAACTTTGAAACTTGAATTCATCTGATGTCATTACTTCACTGTG
TGGCTACTGCATTCGGGGATATCCCCGCGTGCCACTCTGCCCAAACAGAGTCAGGGGCCT
GCCAGGGACACTGCTGTGTGAAAGTCCGTGGGTTCTGTTGTTTTTGATTTTTTTTGTCTT
TTTAAGGCTGCACCCATGGCTTATGGATGTTTCCAAACTAAGGCTTGAATTGCATCTGCA
GCCACCAGCCCATGCAATGTGGGATCCAAGCCTCACCTGTGACCTCCACCACAGCTCATG
GCAAGGCTGGCTCCTTAACCCACTGAGTGAGGCCAGGGGTCAGACCTGTGTCCTCACTGA
CCCTGGTTGGGTTCGTTGCCGCTGAGCCACAACAGGCAGTCCCATTCTGCAAGTTCTTTA
AGGGACAGGTTTTTTTGGCATTGTCAGTGCTGATGTTGTGTAGTCTGGTTTGATTCTATA
CTTGTTAACTCCTAGAACGATACAGGGAGCCACGGTCCCTTTTCCCCAACTCACGATGTG
ATTTTGTTTTTTTCCAATCGCTCGCTTTTCTGATTCTCCAAGGACCAAATATCCCAGTGA
GCACTGGAGCCTATCTCTGGTGAGCCAAAGGCTGCACTCTTTAGCCTCTAACTGTTCTGC
AGCCACCACTGACTTCACAGGTGCAAGTAGCCACACTGTAGGCAAGACCATATGCCAAGG
AAGGTGCCAATAGTGATTCAAAAAATAAGATGACGACCAACCATTAATTCTAAGATAGTA
ACCCTAGAGACAGATTCTTAGGGAGTCTTCATCCCCACATTGATAGGTGTGGGTTTTTAA
ATCTCAGGAGGCCGTTTGCTTCCCATAACAAACAATGTGTCTCATTTTGAAAATTGAAGC
TAATACAGGATTGACTGTTAATACTTTGCTGAAATACATGCTCACAACTGCTAACCAATG
ACATGCGTTCTGTCCTTTGCCCGAGGTGCTTTCCCTGAGTTAGGCGTGGAGTGGTGCCGC
TGAGCGTAGAGCGGGAATGGGAACCACGATGACTGGGTTCAGCATTTCCAGTGCAGCAGC
ATCTAGCAGTGGGGCCTTGAAAGATGTAGGAGCTTTCACTTTGGTTATTAAATTATAGCA
GTTTTATTATAGAGCGCAAGTTAGCCTTGATTTTGTTTAAAATGACTTCTGCTCAGCACC
CAGGAGATAAAATTGACATATTTTTATAATATAAGCATACTTTTTTTGTACATTGTGTTC
ATTCTTAAATAAAGTGAGTTCAGTGTTGGCTTGTAGATAATAAAGAAAGTATTGATTTTG
ATTCAATAAATGTTTTTCAATCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACCTGTACCGGGGGGACTAGATTACTCCGTCCTTATTTCTGCAGTTTTGAGTCTTCA
TAGTGTCAATCCCCAGCAGAATCTGTCAGGGACAAACGTGTATGCTTAGTAATCAAAGTA
GGCATTGTGCAGTTAATAACTTTGAAACTTGAATTCATCTGATGTCATTACTTCACTGTG
TGGCTACTGCATTCGGGGATATCCCCGCGTGCCACTCTGCCCAAACAGAGTCAGGGGCCT
GCCAGGGACACTGCTGTGTGAAAGTCCGTGGGTTCTGTTGTTTTTGATTTTTTTTGTCTT
TTTAAGGCTGCACCCATGGCTTATGGATGTTTCCAAACTAAGGCTTGAATTGCATCTGCA
GCCACCAGCCCATGCAATGTGGGATCCAAGCCTCACCTGTGACCTCCACCACAGCTCATG
GCAAGGCTGGCTCCTTAACCCACTGAGTGAGGCCAGGGGTCAGACCTGTGTCCTCACTGA
CCCTGGTTGGGTTCGTTGCCGCTGAGCCACAACAGGCAGTCCCATTCTGCAAGTTCTTTA
AGGGACAGGTTTTTTTGGCATTGTCAGTGCTGATGTTGTGTAGTCTGGTTTGATTCTATA
CTTGTTAACTCCTAGAACGATACAGGGAGCCACGGTCCCTTTTCCCCAACTCACGATGTG
ATTTTGTTTTTTTCCAATCGCTCGCTTTTCTGATTCTCCAAGGACCAAATATCCCAGTGA
GCACTGGAGCCTATCTCTGGTGAGCCAAAGGCTGCACTCTTTAGCCTCTAACTGTTCTGC
AGCCACCACTGACTTCACAGGTGCAAGTAGCCACACTGTAGGCAAGACCATATGCCAAGG
AAGGTGCCAATAGTGATTCAAAAAATAAGATGACGACCAACCATTAATTCTAAGATAGTA
ACCCTAGAGACAGATTCTTAGGGAGTCTTCATCCCCACATTGATAGGTGTGGGTTTTTAA
ATCTCAGGAGGCCGTTTGCTTCCCATAACAAACAATGTGTCTCATTTTGAAAATTGAAGC
TAATACAGGATTGACTGTTAATACTTTGCTGAAATACATGCTCACAACTGCTAACCAATG
ACATGCGTTCTGTCCTTTGCCCGAGGTGCTTTCCCTGAGTTAGGCGTGGAGTGGTGCCGC
TGAGCGTAGAGCGGGAATGGGAACCACGATGACTGGGTTCAGCATTTCCAGTGCAGCAGC
ATCTAGCAGTGGGGCCTTGAAAGATGTAGGAGCTTTCACTTTGGTTATTAAATTATAGCA
GTTTTATTATAGAGCGCAAGTTAGCCTTGATTTTGTTTAAAATGACTTCTGCTCAGCACC
CAGGAGATAAAATTGACATATTTTTATAATATAAGCATACTTTTTTTGTACATTGTGTTC
ATTCTTAAATAAAGTGAGTTCAGTGTTGGCTTGTAGATAATAAAGAAAGTATTGATTTTG
ATTCAATAAATGTTTTTCAATCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               664-815, - strand, RNAz p=0.999847

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               664-815, - strand, RNAz p=0.999847

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               5-260, gnl|bosTau2|chrX (16043004-16042752)
               

               
               5-260, gnl|Hg17|chr5 (130756933-130757218)
               


               
               592-1471, gnl|bosTau2|chrX (16042668-16041789)
               

               
               592-1471, gnl|Hg17|chr5 (130757315-130758264)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-260, gnl|bosTau2|chrX (16043004-16042752)
               

               
               5-260, gnl|Hg17|chr5 (130756933-130757218)
               


               
               592-1471, gnl|bosTau2|chrX (16042668-16041789)
               

               
               592-1471, gnl|Hg17|chr5 (130757315-130758264)

Expressed library(ies): 36 entry(ies)

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Expressed library(ies): 36 entry(ies)

Help | Less info


               
               cje (0.826173)
               

               
               sto (0.539471)
               

               
               rec (0.519211)
               

               
               cut (0.509771)
               

               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.826173)
               

               
               sto (0.539471)
               

               
               rec (0.519211)
               

               
               cut (0.509771)
               

               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               cmu (0.372787)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               jej (0.197844)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	5-260, gnl\|bosTau2\|chrX (16043004-16042752)
	5-260, gnl\|Hg17\|chr5 (130756933-130757218)

	592-1471, gnl\|bosTau2\|chrX (16042668-16041789)
	592-1471, gnl\|Hg17\|chr5 (130757315-130758264)

	cje (0.826173)
	sto (0.539471)
	rec (0.519211)
	cut (0.509771)
	fco (0.471624)
	amn (0.417711)
	thg (0.380373)
	cmu (0.372787)
	fhi (0.339155)
	vin (0.332557)
	cki (0.330469)
	mga (0.32041)
	sme (0.305437)
	isp (0.300752)
	pty (0.285429)
	ssp (0.271039)
	mgp (0.230681)
	spc (0.226732)
	jej (0.197844)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	csp (0.161186)
	lnt (0.142308)
	cst (0.140036)
	che (0.136314)
	pla (0.133672)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)