Ss1.1-Pig4-TMW8025M14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGATCAACTGGAATCGTCTTTTCCCTCCTTTACGACAGCGACGGAACGTCAACTATCA GGATGGTCGGCGGTCTGAACCACAAGCGTCCCCTCCTCTAGAGGTTTCAGAGGAGCAGGT TGCCCGGCTCATGGAAATGGGATTTTCCAGAGGTGACGCTTTGGAAGCCCTGAGAGCTTC AAACAATGACCTTAATGTGGCCACCAACTTCCTGCTGCAGCAGTGACGTCCCAGCCGACA GCACAGGGACTGGCCGGGCTGCTGACCACAGCGGGCGCCGTCCCCGCCACGCCACCGGAC CAGCCCAAGGACCCAGCACCCCCTGGCGCAATGTTCTCACTGTCCCCTTGGGCAAAGGGT GGTCCCCACTGCTCCCTCCTTTAATTCCAAGGTCATTACCATTAAGTATCAAAAATCAGT TTGCCATTAAAGTAGCATGTATTTTCTATCTTTATTTTTTTATGGGGCATTTTCCTTGGT TTGAGAACCATCCCTCCTTCCTAATGTGTTTTAAATGCATTAAAATAGCAGATTTCTGCA AGTGGTTGAATAGCCCTCCCGATGGAAGTTACTGCTACTGTAATATTCCTTTGACTGTAG TGCATCTTCGTACATTATATCTGATCCCCAGGGCCAGAAAGGAGAAAGGGGAATGCTATT CAGAAGGGACCTGTCAAATTTTATTCTTTAGGGACTTTTTTCATTGCTATTTTTTTCCTC GAATTTGCTTTCCAACCCCAGTGGCTACTGAGGCTTCCCACTCCCTAGGGGTGAGCAGTT CGTGTGTGCGACACGCAGTGTTGGCCAGGCCTGGGCGACGAGGGAGAGACAGTGACCCAG ACTCTCCTCGGCCTCTTTCCAGCCCACTCCGGTCCCCGGGATTTTCCCCAGCCTCTCCCC GCTTCCACTGGAGAATGATGATGGTAATCGGGTGCCAATTCAAGGTTCTGGCATATTCCA TGGAACTTAACTGGAGTTAACTTTGCGTAGAATATCCACAGTTAGCCACTCGGGCTGGGG TAAAAATGGAACAAAGAGGAAACCAAAAGAAGAGTGGGCTTCCTGGGGGAGACCGTCATC AGCCCCGTGTGGGCGCAGCCCTGGAGAAAGCCCCGTGCGGGTCCCAGCTGCGAGGCCAGC CCCTCTGGGTGCGGGTCCTCCCTGGCTCCGGGGCTGTCGGATGTCAGCTGCAGAGGAGGC TGCAGAGGACGCCATCACGGAGGTTGGGGGGGAGGCCAGAGCCGACGAGCCTGGAAAGAT CTAAAGCAGGTGACTATAAGATTTAAGCAACTATTGTGTTCTGCAGAGCGAGCAGAGATG TTTCAGACTGATGCAAATTTAGACATGTGTGGTACATACAATAAACTTTTTAATGTGTTT TACTTTTTGGTATTTTTTATTAGACTTACTAAATAAAACTTTGTTCTAGGCTGATCTATT CTTTACCACCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGATCAACTGGAATCGTCTTTTCCCTCCTTTACGACAGCGACGGAACGTCAACTATCA GGATGGTCGGCGGTCTGAACCACAAGCGTCCCCTCCTCTAGAGGTTTCAGAGGAGCAGGT TGCCCGGCTCATGGAAATGGGATTTTCCAGAGGTGACGCTTTGGAAGCCCTGAGAGCTTC AAACAATGACCTTAATGTGGCCACCAACTTCCTGCTGCAGCAGTGACGTCCCAGCCGACA GCACAGGGACTGGCCGGGCTGCTGACCACAGCGGGCGCCGTCCCCGCCACGCCACCGGAC CAGCCCAAGGACCCAGCACCCCCTGGCGCAATGTTCTCACTGTCCCCTTGGGCAAAGGGT GGTCCCCACTGCTCCCTCCTTTAATTCCAAGGTCATTACCATTAAGTATCAAAAATCAGT TTGCCATTAAAGTAGCATGTATTTTCTATCTTTATTTTTTTATGGGGCATTTTCCTTGGT TTGAGAACCATCCCTCCTTCCTAATGTGTTTTAAATGCATTAAAATAGCAGATTTCTGCA AGTGGTTGAATAGCCCTCCCGATGGAAGTTACTGCTACTGTAATATTCCTTTGACTGTAG TGCATCTTCGTACATTATATCTGATCCCCAGGGCCAGAAAGGAGAAAGGGGAATGCTATT CAGAAGGGACCTGTCAAATTTTATTCTTTAGGGACTTTTTTCATTGCTATTTTTTTCCTC GAATTTGCTTTCCAACCCCAGTGGCTACTGAGGCTTCCCACTCCCTAGGGGTGAGCAGTT CGTGTGTGCGACACGCAGTGTTGGCCAGGCCTGGGCGACGAGGGAGAGACAGTGACCCAG ACTCTCCTCGGCCTCTTTCCAGCCCACTCCGGTCCCCGGGATTTTCCCCAGCCTCTCCCC GCTTCCACTGGAGAATGATGATGGTAATCGGGTGCCAATTCAAGGTTCTGGCATATTCCA TGGAACTTAACTGGAGTTAACTTTGCGTAGAATATCCACAGTTAGCCACTCGGGCTGGGG TAAAAATGGAACAAAGAGGAAACCAAAAGAAGAGTGGGCTTCCTGGGGGAGACCGTCATC AGCCCCGTGTGGGCGCAGCCCTGGAGAAAGCCCCGTGCGGGTCCCAGCTGCGAGGCCAGC CCCTCTGGGTGCGGGTCCTCCCTGGCTCCGGGGCTGTCGGATGTCAGCTGCAGAGGAGGC TGCAGAGGACGCCATCACGGAGGTTGGGGGGGAGGCCAGAGCCGACGAGCCTGGAAAGAT CTAAAGCAGGTGACTATAAGATTTAAGCAACTATTGTGTTCTGCAGAGCGAGCAGAGATG TTTCAGACTGATGCAAATTTAGACATGTGTGGTACATACAATAAACTTTTTAATGTGTTT TACTTTTTGGTATTTTTTATTAGACTTACTAAATAAAACTTTGTTCTAGGCTGATCTATT CTTTACCACCAA |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 116-262, gnl|bosTau2|chr12 (39982737-39982885) | |
| 116-262, gnl|canFam2|chr22 (52371297-52371408) | |
| 116-262, gnl|dasNov1|scaffold_16806 (79548-79659) | |
| 116-262, gnl|echTel1|scaffold_280811 (47098-47209) | |
| 116-262, gnl|fr1|chrUn (135923401-135923512) | |
| 116-262, gnl|hg17|chr13 (98835480-98835591) | |
| 116-262, gnl|Hg17|chr13 (98835480-98835643) | |
| 116-262, gnl|loxAfr1|scaffold_18167 (14306-14417) | |
| 116-262, gnl|mm7|chr14 (116424587-116424698) | |
| 116-262, gnl|Mm7|chr14 (116424587-116424724) | |
| 116-262, gnl|monDom2|scaffold_11 (52894013-52893903) | |
| 116-262, gnl|oryCun1|scaffold_61243 (1051-940) | |
| 116-262, gnl|panTro1|chr14 (82132552-82132663) | |
| 116-262, gnl|rheMac2|chr17 (79759267-79759378) | |
| 116-262, gnl|rn3|chr15 (107140180-107140291) | |
| 116-262, gnl|tetNig1|chrUn_random (9981693-9981583) | |
| 340-1071, gnl|bosTau2|chr12 (39982917-39983645) | |
| 340-1071, gnl|Hg17|chr13 (98835688-98836340) | |
| 1123-1452, gnl|bosTau2|chr12 (39983656-39984008) | |
| 1123-1452, gnl|Hg17|chr13 (98836368-98836754) | |
| 1123-1452, gnl|Mm7|chr14 (116425393-116425713) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-262, gnl|bosTau2|chr12 (39982737-39982885) | |
| 116-262, gnl|canFam2|chr22 (52371297-52371408) | |
| 116-262, gnl|dasNov1|scaffold_16806 (79548-79659) | |
| 116-262, gnl|echTel1|scaffold_280811 (47098-47209) | |
| 116-262, gnl|fr1|chrUn (135923401-135923512) | |
| 116-262, gnl|hg17|chr13 (98835480-98835591) | |
| 116-262, gnl|Hg17|chr13 (98835480-98835643) | |
| 116-262, gnl|loxAfr1|scaffold_18167 (14306-14417) | |
| 116-262, gnl|mm7|chr14 (116424587-116424698) | |
| 116-262, gnl|Mm7|chr14 (116424587-116424724) | |
| 116-262, gnl|monDom2|scaffold_11 (52894013-52893903) | |
| 116-262, gnl|oryCun1|scaffold_61243 (1051-940) | |
| 116-262, gnl|panTro1|chr14 (82132552-82132663) | |
| 116-262, gnl|rheMac2|chr17 (79759267-79759378) | |
| 116-262, gnl|rn3|chr15 (107140180-107140291) | |
| 116-262, gnl|tetNig1|chrUn_random (9981693-9981583) | |
| 340-1071, gnl|bosTau2|chr12 (39982917-39983645) | |
| 340-1071, gnl|Hg17|chr13 (98835688-98836340) | |
| 1123-1452, gnl|bosTau2|chr12 (39983656-39984008) | |
| 1123-1452, gnl|Hg17|chr13 (98836368-98836754) | |
| 1123-1452, gnl|Mm7|chr14 (116425393-116425713) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| pgl (0.236967) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| pgl (0.236967) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |