Ss1.1-Pig4-TMW8025M16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGTGGACGGCATGGTGGGCGATGACCCGTACAATCCTTACAAGTACTCCGACGACAA CCCTTATTACAACTACTATGACACGTACGAAAGGCCCCGGCCTGGGAGCAGGTATCGGCC CGGATATGGAACAGGCTACTTCCAGTACGGTCTTCCTGATCTGGTGCCTGACCCTTACTA CATCCAGGCATCCACGTATGTGCAGAAGATGTCCATGTACAACCTGAGATGCGCTGCGGA GGAAAACTGCTTGGCCAGCACAGCATACAGGGCAGATGTCAGAGATTATGATCATAGGGT GCTGCTAAGATTTCCCCAAAGAGTGAAAAATCAAGGGACATCAGATTTCTTACCAAGCCG ACCAAGATATTCCTGGGAATGGCACAGCTGTCACCAACATTACCACAGCATGGACGAATT CAGCCACTACGACCTGCTTGATGCCAGCACCCAGAGGAGAGTGGCTGAAGGCCACAAAGC AAGTTTCTGTCTTGAGGACACATCCTGTGACTACGGCTACCACAGGCGATTTGCCTGTAC TGCACACACACAGGGATTGAGTCCTGGCTGCTATGATACATATAATGCAGATATAGACTG TCAGTGGATTGATATTACAGATGTAAAACCTGGAAACTACATTCTAAAGGTCAGTGTGAA CCCCAGCTACCTGGTGCCTGAGTCAGACTATTCCAACAATGTCGTTCGCTGTGAAATTCG CTACACAGGACATCATGCATATGCCTCGGGCTGCACAATTTCACCGTATTAGAAAGCAAC TCCCAATGGATAAATCAGTGCCTGATGTTCTGAAGTGGGAAAAAATAGATTAACTTCAGT AGGATTTATGTATTTTTGAAAGAACAGAAAACAACAAAGTAGTTTTTGTTTTGGACTATT TTATAACAAAGCACATAACTGGATCTTGAACATTTAAATCGGCATATTTTGAGAAATTCT TGAAATTATTATTCACACTACTTTGTGATTAACAGTGTTTCAATTCTATAATTGCACACT TGGCTCTTTCAAGAAATCCAAATTTCTTATGCTCCTTTTGAAATTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGTGGACGGCATGGTGGGCGATGACCCGTACAATCCTTACAAGTACTCCGACGACAA CCCTTATTACAACTACTATGACACGTACGAAAGGCCCCGGCCTGGGAGCAGGTATCGGCC CGGATATGGAACAGGCTACTTCCAGTACGGTCTTCCTGATCTGGTGCCTGACCCTTACTA CATCCAGGCATCCACGTATGTGCAGAAGATGTCCATGTACAACCTGAGATGCGCTGCGGA GGAAAACTGCTTGGCCAGCACAGCATACAGGGCAGATGTCAGAGATTATGATCATAGGGT GCTGCTAAGATTTCCCCAAAGAGTGAAAAATCAAGGGACATCAGATTTCTTACCAAGCCG ACCAAGATATTCCTGGGAATGGCACAGCTGTCACCAACATTACCACAGCATGGACGAATT CAGCCACTACGACCTGCTTGATGCCAGCACCCAGAGGAGAGTGGCTGAAGGCCACAAAGC AAGTTTCTGTCTTGAGGACACATCCTGTGACTACGGCTACCACAGGCGATTTGCCTGTAC TGCACACACACAGGGATTGAGTCCTGGCTGCTATGATACATATAATGCAGATATAGACTG TCAGTGGATTGATATTACAGATGTAAAACCTGGAAACTACATTCTAAAGGTCAGTGTGAA CCCCAGCTACCTGGTGCCTGAGTCAGACTATTCCAACAATGTCGTTCGCTGTGAAATTCG CTACACAGGACATCATGCATATGCCTCGGGCTGCACAATTTCACCGTATTAGAAAGCAAC TCCCAATGGATAAATCAGTGCCTGATGTTCTGAAGTGGGAAAAAATAGATTAACTTCAGT AGGATTTATGTATTTTTGAAAGAACAGAAAACAACAAAGTAGTTTTTGTTTTGGACTATT TTATAACAAAGCACATAACTGGATCTTGAACATTTAAATCGGCATATTTTGAGAAATTCT TGAAATTATTATTCACACTACTTTGTGATTAACAGTGTTTCAATTCTATAATTGCACACT TGGCTCTTTCAAGAAATCCAAATTTCTTATGCTCCTTTTGAAATTATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr7 (24633006-24632856) | |
| 1-151, gnl|canFam2|chr11 (15043241-15043447) | |
| 1-151, gnl|danRer3|chrUn (8763016-8763222) | |
| 1-151, gnl|dasNov1|scaffold_8413 (6272-6486) | |
| 1-151, gnl|fr1|chrUn (107376498-107376296) | |
| 1-151, gnl|hg17|chr5 (121440945-121441159) | |
| 1-151, gnl|Hg17|chr5 (121441091-121440947) | |
| 1-151, gnl|loxAfr1|scaffold_7550 (26489-26307) | |
| 1-151, gnl|mm7|chr18 (52906759-52906973) | |
| 1-151, gnl|Mm7|chr18 (52906909-52906761) | |
| 1-151, gnl|monDom2|scaffold_55 (4550063-4549819) | |
| 1-151, gnl|oryCun1|scaffold_199410 (12046-12260) | |
| 1-151, gnl|panTro1|chr4 (127702958-127703172) | |
| 1-151, gnl|rheMac2|chr6 (118509817-118510031) | |
| 1-151, gnl|rn3|chr18 (47943394-47943608) | |
| 1-151, gnl|tetNig1|chr4 (1423168-1423368) | |
| 1-151, gnl|xenTro1|scaffold_2 (4966506-4966286) | |
| 256-396, gnl|bosTau2|chr7 (24631329-24631189) | |
| 256-396, gnl|canFam2|chr11 (15041049-15041172) | |
| 256-396, gnl|danRer3|chrUn (8759656-8759749) | |
| 256-396, gnl|dasNov1|scaffold_8413 (4230-4352) | |
| 256-396, gnl|echTel1|scaffold_219590 (4936-4814) | |
| 256-396, gnl|fr1|chrUn (107377259-107377139) | |
| 256-396, gnl|galGal2|chrUn (1012902-1013006) | |
| 256-396, gnl|hg17|chr5 (121438963-121439086) | |
| 256-396, gnl|Hg17|chr5 (121439138-121438998) | |
| 256-396, gnl|loxAfr1|scaffold_7550 (28345-28222) | |
| 256-396, gnl|mm7|chr18 (52904918-52905035) | |
| 256-396, gnl|Mm7|chr18 (52905087-52904947) | |
| 256-396, gnl|monDom2|scaffold_55 (4552593-4552475) | |
| 256-396, gnl|oryCun1|scaffold_199410 (10118-10245) | |
| 256-396, gnl|panTro1|chr4 (127700982-127701105) | |
| 256-396, gnl|rheMac2|chr6 (118507825-118507948) | |
| 256-396, gnl|rn3|chr18 (47941565-47941687) | |
| 256-396, gnl|tetNig1|chr4 (1422457-1422551) | |
| 256-396, gnl|xenTro1|scaffold_2 (4981474-4981359) | |
| 398-554, gnl|bosTau2|chr21 (23931937-23932093) | |
| 398-554, gnl|canFam2|chr30 (40197724-40197944) | |
| 398-554, gnl|danRer3|chr18 (50177901-50178076) | |
| 398-554, gnl|dasNov1|scaffold_8413 (2542-2352) | |
| 398-554, gnl|echTel1|scaffold_278459 (2724-2526) | |
| 398-554, gnl|fr1|chrUn (212420703-212420484) | |
| 398-554, gnl|galGal2|chrUn (148649569-148649777) | |
| 398-554, gnl|hg17|chr15 (72026429-72026649) | |
| 398-554, gnl|Hg17|chr15 (72026462-72026614) | |
| 398-554, gnl|loxAfr1|scaffold_126833 (1320-1100) | |
| 398-554, gnl|mm7|chr9 (58322246-58322043) | |
| 398-554, gnl|Mm7|chr9 (58322223-58322067) | |
| 398-554, gnl|monDom2|scaffold_41 (4385982-4385791) | |
| 398-554, gnl|oryCun1|scaffold_199410 (8322-8103) | |
| 398-554, gnl|panTro1|chr16_random (21159020-21159240) | |
| 398-554, gnl|rheMac2|chr7 (52629038-52629265) | |
| 398-554, gnl|rn3|chr8 (62107461-62107257) | |
| 398-554, gnl|tetNig1|chr5 (2044093-2044295) | |
| 398-554, gnl|xenTro1|scaffold_62 (126676-126494) | |
| 648-767, gnl|bosTau2|chr7 (24625730-24625611) | |
| 648-767, gnl|canFam2|chr11 (15035651-15035815) | |
| 648-767, gnl|danRer3|chrUn (8744050-8744233) | |
| 648-767, gnl|echTel1|scaffold_324770 (40067-39905) | |
| 648-767, gnl|fr1|chrUn (107378675-107378508) | |
| 648-767, gnl|galGal2|chrUn (1007793-1007931) | |
| 648-767, gnl|hg17|chr5 (121433607-121433771) | |
| 648-767, gnl|Hg17|chr5 (121433764-121433645) | |
| 648-767, gnl|loxAfr1|scaffold_7550 (35768-35605) | |
| 648-767, gnl|mm7|chr18 (52898813-52898964) | |
| 648-767, gnl|Mm7|chr18 (52898957-52898838) | |
| 648-767, gnl|monDom2|scaffold_55 (4557425-4557300) | |
| 648-767, gnl|oryCun1|scaffold_199410 (4784-4927) | |
| 648-767, gnl|panTro1|chr4 (127695619-127695783) | |
| 648-767, gnl|rheMac2|chr6 (118502402-118502563) | |
| 648-767, gnl|rn3|chr18 (47935869-47936026) | |
| 648-767, gnl|tetNig1|chr4 (1421237-1421370) | |
| 648-767, gnl|xenTro1|scaffold_2 (4985611-4985450) | |
| 778-1068, gnl|bosTau2|chr7 (24622096-24621800) | |
| 778-1068, gnl|canFam2|chr11 (15030826-15031543) | |
| 778-1068, gnl|dasNov1|scaffold_168057 (3862-3155) | |
| 778-1068, gnl|echTel1|scaffold_324770 (43745-43017) | |
| 778-1068, gnl|galGal2|chrUn (1005603-1006367) | |
| 778-1068, gnl|hg17|chr5 (121429646-121430365) | |
| 778-1068, gnl|Hg17|chr5 (121430324-121430025) | |
| 778-1068, gnl|loxAfr1|scaffold_7550 (40094-39372) | |
| 778-1068, gnl|mm7|chr18 (52896605-52897301) | |
| 778-1068, gnl|Mm7|chr18 (52897260-52896967) | |
| 778-1068, gnl|monDom2|scaffold_55 (4559006-4558294) | |
| 778-1068, gnl|oryCun1|scaffold_199410 (756-1425) | |
| 778-1068, gnl|panTro1|chr4 (127691643-127692362) | |
| 778-1068, gnl|rheMac2|chr6 (118498452-118499167) | |
| 778-1068, gnl|rn3|chr18 (47933863-47934556) |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr7 (24633006-24632856) | |
| 1-151, gnl|canFam2|chr11 (15043241-15043447) | |
| 1-151, gnl|danRer3|chrUn (8763016-8763222) | |
| 1-151, gnl|dasNov1|scaffold_8413 (6272-6486) | |
| 1-151, gnl|fr1|chrUn (107376498-107376296) | |
| 1-151, gnl|hg17|chr5 (121440945-121441159) | |
| 1-151, gnl|Hg17|chr5 (121441091-121440947) | |
| 1-151, gnl|loxAfr1|scaffold_7550 (26489-26307) | |
| 1-151, gnl|mm7|chr18 (52906759-52906973) | |
| 1-151, gnl|Mm7|chr18 (52906909-52906761) | |
| 1-151, gnl|monDom2|scaffold_55 (4550063-4549819) | |
| 1-151, gnl|oryCun1|scaffold_199410 (12046-12260) | |
| 1-151, gnl|panTro1|chr4 (127702958-127703172) | |
| 1-151, gnl|rheMac2|chr6 (118509817-118510031) | |
| 1-151, gnl|rn3|chr18 (47943394-47943608) | |
| 1-151, gnl|tetNig1|chr4 (1423168-1423368) | |
| 1-151, gnl|xenTro1|scaffold_2 (4966506-4966286) | |
| 256-396, gnl|bosTau2|chr7 (24631329-24631189) | |
| 256-396, gnl|canFam2|chr11 (15041049-15041172) | |
| 256-396, gnl|danRer3|chrUn (8759656-8759749) | |
| 256-396, gnl|dasNov1|scaffold_8413 (4230-4352) | |
| 256-396, gnl|echTel1|scaffold_219590 (4936-4814) | |
| 256-396, gnl|fr1|chrUn (107377259-107377139) | |
| 256-396, gnl|galGal2|chrUn (1012902-1013006) | |
| 256-396, gnl|hg17|chr5 (121438963-121439086) | |
| 256-396, gnl|Hg17|chr5 (121439138-121438998) | |
| 256-396, gnl|loxAfr1|scaffold_7550 (28345-28222) | |
| 256-396, gnl|mm7|chr18 (52904918-52905035) | |
| 256-396, gnl|Mm7|chr18 (52905087-52904947) | |
| 256-396, gnl|monDom2|scaffold_55 (4552593-4552475) | |
| 256-396, gnl|oryCun1|scaffold_199410 (10118-10245) | |
| 256-396, gnl|panTro1|chr4 (127700982-127701105) | |
| 256-396, gnl|rheMac2|chr6 (118507825-118507948) | |
| 256-396, gnl|rn3|chr18 (47941565-47941687) | |
| 256-396, gnl|tetNig1|chr4 (1422457-1422551) | |
| 256-396, gnl|xenTro1|scaffold_2 (4981474-4981359) | |
| 398-554, gnl|bosTau2|chr21 (23931937-23932093) | |
| 398-554, gnl|canFam2|chr30 (40197724-40197944) | |
| 398-554, gnl|danRer3|chr18 (50177901-50178076) | |
| 398-554, gnl|dasNov1|scaffold_8413 (2542-2352) | |
| 398-554, gnl|echTel1|scaffold_278459 (2724-2526) | |
| 398-554, gnl|fr1|chrUn (212420703-212420484) | |
| 398-554, gnl|galGal2|chrUn (148649569-148649777) | |
| 398-554, gnl|hg17|chr15 (72026429-72026649) | |
| 398-554, gnl|Hg17|chr15 (72026462-72026614) | |
| 398-554, gnl|loxAfr1|scaffold_126833 (1320-1100) | |
| 398-554, gnl|mm7|chr9 (58322246-58322043) | |
| 398-554, gnl|Mm7|chr9 (58322223-58322067) | |
| 398-554, gnl|monDom2|scaffold_41 (4385982-4385791) | |
| 398-554, gnl|oryCun1|scaffold_199410 (8322-8103) | |
| 398-554, gnl|panTro1|chr16_random (21159020-21159240) | |
| 398-554, gnl|rheMac2|chr7 (52629038-52629265) | |
| 398-554, gnl|rn3|chr8 (62107461-62107257) | |
| 398-554, gnl|tetNig1|chr5 (2044093-2044295) | |
| 398-554, gnl|xenTro1|scaffold_62 (126676-126494) | |
| 648-767, gnl|bosTau2|chr7 (24625730-24625611) | |
| 648-767, gnl|canFam2|chr11 (15035651-15035815) | |
| 648-767, gnl|danRer3|chrUn (8744050-8744233) | |
| 648-767, gnl|echTel1|scaffold_324770 (40067-39905) | |
| 648-767, gnl|fr1|chrUn (107378675-107378508) | |
| 648-767, gnl|galGal2|chrUn (1007793-1007931) | |
| 648-767, gnl|hg17|chr5 (121433607-121433771) | |
| 648-767, gnl|Hg17|chr5 (121433764-121433645) | |
| 648-767, gnl|loxAfr1|scaffold_7550 (35768-35605) | |
| 648-767, gnl|mm7|chr18 (52898813-52898964) | |
| 648-767, gnl|Mm7|chr18 (52898957-52898838) | |
| 648-767, gnl|monDom2|scaffold_55 (4557425-4557300) | |
| 648-767, gnl|oryCun1|scaffold_199410 (4784-4927) | |
| 648-767, gnl|panTro1|chr4 (127695619-127695783) | |
| 648-767, gnl|rheMac2|chr6 (118502402-118502563) | |
| 648-767, gnl|rn3|chr18 (47935869-47936026) | |
| 648-767, gnl|tetNig1|chr4 (1421237-1421370) | |
| 648-767, gnl|xenTro1|scaffold_2 (4985611-4985450) | |
| 778-1068, gnl|bosTau2|chr7 (24622096-24621800) | |
| 778-1068, gnl|canFam2|chr11 (15030826-15031543) | |
| 778-1068, gnl|dasNov1|scaffold_168057 (3862-3155) | |
| 778-1068, gnl|echTel1|scaffold_324770 (43745-43017) | |
| 778-1068, gnl|galGal2|chrUn (1005603-1006367) | |
| 778-1068, gnl|hg17|chr5 (121429646-121430365) | |
| 778-1068, gnl|Hg17|chr5 (121430324-121430025) | |
| 778-1068, gnl|loxAfr1|scaffold_7550 (40094-39372) | |
| 778-1068, gnl|mm7|chr18 (52896605-52897301) | |
| 778-1068, gnl|Mm7|chr18 (52897260-52896967) | |
| 778-1068, gnl|monDom2|scaffold_55 (4559006-4558294) | |
| 778-1068, gnl|oryCun1|scaffold_199410 (756-1425) | |
| 778-1068, gnl|panTro1|chr4 (127691643-127692362) | |
| 778-1068, gnl|rheMac2|chr6 (118498452-118499167) | |
| 778-1068, gnl|rn3|chr18 (47933863-47934556) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ova (0.258264) | |
| gul (0.177588) | |
| cut (0.169924) | |
| ski (0.146735) | |
| csk (0.140746) | |
| cst (0.140036) | |
| kid (0.129735) | |
| bla (0.124347) | |
| eep (0.122564) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| gul (0.177588) | |
| cut (0.169924) | |
| ski (0.146735) | |
| csk (0.140746) | |
| cst (0.140036) | |
| kid (0.129735) | |
| bla (0.124347) | |
| eep (0.122564) |