Non-Coding RNA Search

Ss1.1-Pig4-TMW8025N05.3

Sequence:


               
               TGAATTTCACCTCTGCCCACGACTGTGCCAGGTGGTGGAGGCGGGAATTTCCTGGGACGT
GGTGGCTCCAGAAATGCATTAATCTCGGCTCTTAGGAACCAGGCGCCACCTCCAAGCTGT
GAAACTAAAACCTCTCCACTAAGCGTTTTTAGATTCTTAGTTTTGAGAGAACAGTGTCTG
ATTTACCTGTGCCGCTTCTCCTGTCTCCTGAGCGATGGTAGCTGCCTACTTGATGGAAAC
GCGTGCCTTTCAAACTTTGTACATTTAAATAAGTACATCTGAGATGTTGCTTCTTTTTAC
TTTTTCTACTTTTTCTTACCTTTTTCTAAAAAAATTTTTTTTTTCTTCTTTTTGGGGGGG
GGAGGGTGGCTTATCTCTTCCTGGGGGTGGGGGCAGGGAACTACAGCAAACTCATTTTTA
TGCAATCTATTTTTCGGTGTCAAGTTTGGACTTTTGCTGTCACTTACCTGCTGTGTTTCG
CTACTTTCTGACCAAGCAATGCTAACTTTTGTACAGATCCATTTGATAAAATTAAAAAAA
AAAATGCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATTTCACCTCTGCCCACGACTGTGCCAGGTGGTGGAGGCGGGAATTTCCTGGGACGT
GGTGGCTCCAGAAATGCATTAATCTCGGCTCTTAGGAACCAGGCGCCACCTCCAAGCTGT
GAAACTAAAACCTCTCCACTAAGCGTTTTTAGATTCTTAGTTTTGAGAGAACAGTGTCTG
ATTTACCTGTGCCGCTTCTCCTGTCTCCTGAGCGATGGTAGCTGCCTACTTGATGGAAAC
GCGTGCCTTTCAAACTTTGTACATTTAAATAAGTACATCTGAGATGTTGCTTCTTTTTAC
TTTTTCTACTTTTTCTTACCTTTTTCTAAAAAAATTTTTTTTTTCTTCTTTTTGGGGGGG
GGAGGGTGGCTTATCTCTTCCTGGGGGTGGGGGCAGGGAACTACAGCAAACTCATTTTTA
TGCAATCTATTTTTCGGTGTCAAGTTTGGACTTTTGCTGTCACTTACCTGCTGTGTTTCG
CTACTTTCTGACCAAGCAATGCTAACTTTTGTACAGATCCATTTGATAAAATTAAAAAAA
AAAATGCTTTTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-344, gnl|bosTau2|chr25 (1005946-1005602)
               

               
               1-344, gnl|Hg17|chr16 (976392-976788)
               

               
               1-344, gnl|Mm7|chr17 (23749368-23749021)
               


               
               369-539, gnl|bosTau2|chr25 (1005600-1005429)
               

               
               369-539, gnl|Hg17|chr16 (976790-976967)
               

               
               369-539, gnl|Mm7|chr17 (23749013-23748819)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-344, gnl|bosTau2|chr25 (1005946-1005602)
               

               
               1-344, gnl|Hg17|chr16 (976392-976788)
               

               
               1-344, gnl|Mm7|chr17 (23749368-23749021)
               


               
               369-539, gnl|bosTau2|chr25 (1005600-1005429)
               

               
               369-539, gnl|Hg17|chr16 (976790-976967)
               

               
               369-539, gnl|Mm7|chr17 (23749013-23748819)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-344, gnl\|bosTau2\|chr25 (1005946-1005602)
	1-344, gnl\|Hg17\|chr16 (976392-976788)
	1-344, gnl\|Mm7\|chr17 (23749368-23749021)

	369-539, gnl\|bosTau2\|chr25 (1005600-1005429)
	369-539, gnl\|Hg17\|chr16 (976790-976967)
	369-539, gnl\|Mm7\|chr17 (23749013-23748819)

	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	fat (0.147427)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)