Non-Coding RNA Search

Ss1.1-Pig4-TMW8025N22.5

Sequence:


               
               CGACTGCTGGAGAAGCAGCCGCGGCGGTGAGGAGAGCCATGGGTCAGGCCGCCAAGGTTT
TACGGCTCTTTAAAACATTGCACAGGACCAGACAACAAGTTTTTAAAAATGATGCCAGGG
CATTAGAAGCAGCCAGAATAAAGATAAATGAAGAATTCAAATGTAATAAAAGTGAAACTT
CTCCTAAGAAAATAGAAGAGCTAATAAAAATAGGTTCTGATGTTGAATTGATACTTAGAA
CATCTGTTATACAAGGTATTCACACAGACCACAATACGCTGAAATTGGTCCCTAGGAAAG
ACCTTCTTATAGAAAATGTGCCATATTGTGATGCACCAACTCAGAAGCAATGAATTTTTC
TAGAGTAAAATCACATCTTTGTCGTTTTTAATTTTAAAATATGTAACTGGCTCAAGTCAT
AGAAATGCAGACATATTTCTCTGAACTGGCATATTGAAAATGAGTGAATTAAAATACAGT
TTCATGATTATTTTCATGTTAAAAGGACATTGCTAAAAACTAGAGAACATATTTAAGTAT
TTCTAAAGAACATTAGATAAGAAGAATTTCATTTTTACTGAAAATGAAACTGTATAAAGG
GAAATAAATGCTTAGGGAGGTATATCATACTCACTTTTTTTTTGACCTTGGTGAATATTT
TGGTTTTATCATAGCTATTTGAGAATGAAGTGTTTTGACAGGTTGATGGGTTTTCTTCCC
AAGTGAAATGACTATTAGATTAAAACTATTAGATTACATTAATACTTAGTCCCCAGAAGA
TTGTTTGTCCAAAAAACATAATGTGTGCCAACTCTCAACAAAAGGTAGCCTTTGTTTCCT
AAAGCACTGAAATTATTTCAGTAACTAACAAATAATTATATAGTTTCCTTTTAGAGATAA
AGCATATCTCTGTGTTCCTATAAAGAAAATTTTTAATCAGTCTTCTAAAGATAGGTGAAT
AAAATCATGTAGGATAACCGAAATAAAGCACTCAATTTTTAAGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACTGCTGGAGAAGCAGCCGCGGCGGTGAGGAGAGCCATGGGTCAGGCCGCCAAGGTTT
TACGGCTCTTTAAAACATTGCACAGGACCAGACAACAAGTTTTTAAAAATGATGCCAGGG
CATTAGAAGCAGCCAGAATAAAGATAAATGAAGAATTCAAATGTAATAAAAGTGAAACTT
CTCCTAAGAAAATAGAAGAGCTAATAAAAATAGGTTCTGATGTTGAATTGATACTTAGAA
CATCTGTTATACAAGGTATTCACACAGACCACAATACGCTGAAATTGGTCCCTAGGAAAG
ACCTTCTTATAGAAAATGTGCCATATTGTGATGCACCAACTCAGAAGCAATGAATTTTTC
TAGAGTAAAATCACATCTTTGTCGTTTTTAATTTTAAAATATGTAACTGGCTCAAGTCAT
AGAAATGCAGACATATTTCTCTGAACTGGCATATTGAAAATGAGTGAATTAAAATACAGT
TTCATGATTATTTTCATGTTAAAAGGACATTGCTAAAAACTAGAGAACATATTTAAGTAT
TTCTAAAGAACATTAGATAAGAAGAATTTCATTTTTACTGAAAATGAAACTGTATAAAGG
GAAATAAATGCTTAGGGAGGTATATCATACTCACTTTTTTTTTGACCTTGGTGAATATTT
TGGTTTTATCATAGCTATTTGAGAATGAAGTGTTTTGACAGGTTGATGGGTTTTCTTCCC
AAGTGAAATGACTATTAGATTAAAACTATTAGATTACATTAATACTTAGTCCCCAGAAGA
TTGTTTGTCCAAAAAACATAATGTGTGCCAACTCTCAACAAAAGGTAGCCTTTGTTTCCT
AAAGCACTGAAATTATTTCAGTAACTAACAAATAATTATATAGTTTCCTTTTAGAGATAA
AGCATATCTCTGTGTTCCTATAAAGAAAATTTTTAATCAGTCTTCTAAAGATAGGTGAAT
AAAATCATGTAGGATAACCGAAATAAAGCACTCAATTTTTAAGGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55726224|emb|CAH89884.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55726224|emb|CAH89884.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               789-907, + strand, RNAz p=0.587893
               

               
               805-994, - strand, RNAz p=0.966561

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               789-907, + strand, RNAz p=0.587893
               

               
               805-994, - strand, RNAz p=0.966561

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_181705, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_181705, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               283-1007, gnl|bosTau2|chr7 (18430281-18431015)
               

               
               283-1007, gnl|canFam2|chr11 (22589324-22589860)
               

               
               283-1007, gnl|echTel1|scaffold_48900 (418-887)
               

               
               283-1007, gnl|hg17|chr5 (130563045-130563605)
               

               
               283-1007, gnl|Hg17|chr5 (130563123-130563856)
               

               
               283-1007, gnl|loxAfr1|scaffold_8433 (42625-42070)
               

               
               283-1007, gnl|mm7|chr11 (54798056-54797567)
               

               
               283-1007, gnl|monDom2|scaffold_16 (59620754-59621396)
               

               
               283-1007, gnl|oryCun1|scaffold_188027 (14443-15001)
               

               
               283-1007, gnl|panTro1|chr4 (136902512-136903071)
               

               
               283-1007, gnl|rheMac2|chr6 (127629281-127629843)
               

               
               283-1007, gnl|rn3|chr10 (40261879-40261362)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-1007, gnl|bosTau2|chr7 (18430281-18431015)
               

               
               283-1007, gnl|canFam2|chr11 (22589324-22589860)
               

               
               283-1007, gnl|echTel1|scaffold_48900 (418-887)
               

               
               283-1007, gnl|hg17|chr5 (130563045-130563605)
               

               
               283-1007, gnl|Hg17|chr5 (130563123-130563856)
               

               
               283-1007, gnl|loxAfr1|scaffold_8433 (42625-42070)
               

               
               283-1007, gnl|mm7|chr11 (54798056-54797567)
               

               
               283-1007, gnl|monDom2|scaffold_16 (59620754-59621396)
               

               
               283-1007, gnl|oryCun1|scaffold_188027 (14443-15001)
               

               
               283-1007, gnl|panTro1|chr4 (136902512-136903071)
               

               
               283-1007, gnl|rheMac2|chr6 (127629281-127629843)
               

               
               283-1007, gnl|rn3|chr10 (40261879-40261362)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.230681)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	789-907, + strand, RNAz p=0.587893
	805-994, - strand, RNAz p=0.966561

	283-1007, gnl\|bosTau2\|chr7 (18430281-18431015)
	283-1007, gnl\|canFam2\|chr11 (22589324-22589860)
	283-1007, gnl\|echTel1\|scaffold_48900 (418-887)
	283-1007, gnl\|hg17\|chr5 (130563045-130563605)
	283-1007, gnl\|Hg17\|chr5 (130563123-130563856)
	283-1007, gnl\|loxAfr1\|scaffold_8433 (42625-42070)
	283-1007, gnl\|mm7\|chr11 (54798056-54797567)
	283-1007, gnl\|monDom2\|scaffold_16 (59620754-59621396)
	283-1007, gnl\|oryCun1\|scaffold_188027 (14443-15001)
	283-1007, gnl\|panTro1\|chr4 (136902512-136903071)
	283-1007, gnl\|rheMac2\|chr6 (127629281-127629843)
	283-1007, gnl\|rn3\|chr10 (40261879-40261362)

	mgp (0.230681)
	cst (0.140036)
	che (0.136314)
	ese (0.126502)
	ldo (0.0970026)