Ss1.1-Pig4-TMW8025O05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGATGAGCAGAGAACTGCTACTTATATCACAGAATTGGCAAATGCCCTATCTTACTG TCACTCAAAGAGAGTTATTCACAGAGACATTAAGCCAGAGAACCTGCTCCTTGGATCCGC TGGAGAGCTTAAGATTGCCGATTTTGGGTGGTCGGTCCATGCCCCGTCCTCCAGGAGAAC CACCCTCTGCGGCACCCTGGACTACTTGCCCCCCGAGATGATCGAAGGCCGGATGCATGA CGAGAAGGTGGATCTCTGGAGCTTGGGGGTGCTTTGCTATGAATTCCTGGTTGGGAAGCC CCCCTTTGAGGCAAACACGTACCAAGAGACCTACAAAAGGATATCCCGGGTGGAATTCAC CTTCCCTGACTTTGTGCCCGAGGGAGCCAGGGACCTCATCTCAAGACTATTGAAGCACAA CCCCAGCCACAGGCCCACCCTCAAGGAGGTGCTCGAACACCCCTGGATCACCGCCAATTC CAAGCCAGCAAGTAGTCACAAAAAAGAATCCACCAGCAAGCAACCCTAAGAACCTTTGCG GGTAGAACTCCTGAGCCAGGGCTGCTGTGTACTCTGTCTGCAACCAGCCGCTGACCTGTC CTCTGCTGCCGGCCCACCCTCGACCTGCAGGACGTGCAGGCCCCTGCAGTGAGTGCCGCC ACGAGGATCGTGCTACTCATGTCGCTGGTGGTCCAGTCAGTCCGGAGGCAAGGCTCAGGG GCAGCCACCCCACAGCCTGTTGTGAGTACAGCGTCCTCGTGGAAGAGGCCTCGGGGCCCG GCTGTGGGGAAGGTGGCCTCTTGGGCCCGACCAGTGGAAAAGCTGTGCAATAACCTCCCT GTCCCTGTGTGCGTGTAACTTATCGGGTGGCCCAGTCTGAGAAAGCTGTCAGGATGAACA CGTGACCATTTCTTTTAAATGTCAGAGACTTTGGTACGGACCTGTATCTCACCTCCATGC CATCCTTGCAGGATGCTCAGCGTCTGTCCAGCACCCCGGGAGCCTGGCTGGCCGGCCCTC CTCAGCCAGTCGGTGCCTGGCGAGGCAGACAGAGCACAAGTTCCTGGCTCCCCTGCTCGG GACACAGCATGTCTTGGCTGTTTCTAAATGTTAAAGGTTTTTTTTTCTCTCTCATGATTT TGGTGTTTGTTTATAATCTTTGTAAAGTGCATCACGACATCTATAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGATGAGCAGAGAACTGCTACTTATATCACAGAATTGGCAAATGCCCTATCTTACTG TCACTCAAAGAGAGTTATTCACAGAGACATTAAGCCAGAGAACCTGCTCCTTGGATCCGC TGGAGAGCTTAAGATTGCCGATTTTGGGTGGTCGGTCCATGCCCCGTCCTCCAGGAGAAC CACCCTCTGCGGCACCCTGGACTACTTGCCCCCCGAGATGATCGAAGGCCGGATGCATGA CGAGAAGGTGGATCTCTGGAGCTTGGGGGTGCTTTGCTATGAATTCCTGGTTGGGAAGCC CCCCTTTGAGGCAAACACGTACCAAGAGACCTACAAAAGGATATCCCGGGTGGAATTCAC CTTCCCTGACTTTGTGCCCGAGGGAGCCAGGGACCTCATCTCAAGACTATTGAAGCACAA CCCCAGCCACAGGCCCACCCTCAAGGAGGTGCTCGAACACCCCTGGATCACCGCCAATTC CAAGCCAGCAAGTAGTCACAAAAAAGAATCCACCAGCAAGCAACCCTAAGAACCTTTGCG GGTAGAACTCCTGAGCCAGGGCTGCTGTGTACTCTGTCTGCAACCAGCCGCTGACCTGTC CTCTGCTGCCGGCCCACCCTCGACCTGCAGGACGTGCAGGCCCCTGCAGTGAGTGCCGCC ACGAGGATCGTGCTACTCATGTCGCTGGTGGTCCAGTCAGTCCGGAGGCAAGGCTCAGGG GCAGCCACCCCACAGCCTGTTGTGAGTACAGCGTCCTCGTGGAAGAGGCCTCGGGGCCCG GCTGTGGGGAAGGTGGCCTCTTGGGCCCGACCAGTGGAAAAGCTGTGCAATAACCTCCCT GTCCCTGTGTGCGTGTAACTTATCGGGTGGCCCAGTCTGAGAAAGCTGTCAGGATGAACA CGTGACCATTTCTTTTAAATGTCAGAGACTTTGGTACGGACCTGTATCTCACCTCCATGC CATCCTTGCAGGATGCTCAGCGTCTGTCCAGCACCCCGGGAGCCTGGCTGGCCGGCCCTC CTCAGCCAGTCGGTGCCTGGCGAGGCAGACAGAGCACAAGTTCCTGGCTCCCCTGCTCGG GACACAGCATGTCTTGGCTGTTTCTAAATGTTAAAGGTTTTTTTTTCTCTCTCATGATTT TGGTGTTTGTTTATAATCTTTGTAAAGTGCATCACGACATCTATAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 26-175, gnl|bosTau2|chr13 (40904763-40904912) | |
| 26-175, gnl|canFam2|chr24 (44569910-44570059) | |
| 26-175, gnl|danRer3|chrNA (52609839-52609716) | |
| 26-175, gnl|dasNov1|scaffold_1805 (146208-146059) | |
| 26-175, gnl|echTel1|scaffold_304397 (8923-9034) | |
| 26-175, gnl|fr1|chrUn (44575681-44575538) | |
| 26-175, gnl|galGal2|chr20 (11544613-11544454) | |
| 26-175, gnl|hg17|chr20 (54381840-54381989) | |
| 26-175, gnl|Hg17|chr20 (54382019-54381870) | |
| 26-175, gnl|loxAfr1|scaffold_61591 (5066-5156) | |
| 26-175, gnl|mm7|chr2 (172152396-172152527) | |
| 26-175, gnl|Mm7|chr2 (172152557-172152408) | |
| 26-175, gnl|monDom2|scaffold_1 (169623186-169623350) | |
| 26-175, gnl|oryCun1|scaffold_211767 (14730-14879) | |
| 26-175, gnl|panTro1|chr21 (57299567-57299716) | |
| 26-175, gnl|rheMac2|chr10 (8173246-8173097) | |
| 26-175, gnl|rn3|chr3 (163180386-163180517) | |
| 26-175, gnl|tetNig1|chr11 (2996982-2997116) | |
| 26-175, gnl|xenTro1|scaffold_1157 (193183-193045) | |
| 346-623, gnl|bosTau2|chr13 (40907320-40907589) | |
| 346-623, gnl|Hg17|chr20 (54378807-54378519) | |
| 346-623, gnl|Mm7|chr2 (172149638-172149379) | |
| 646-1153, gnl|bosTau2|chr13 (40907662-40908175) | |
| 646-1153, gnl|Hg17|chr20 (54378428-54377917) | |
| 646-1153, gnl|Mm7|chr2 (172149331-172148880) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-175, gnl|bosTau2|chr13 (40904763-40904912) | |
| 26-175, gnl|canFam2|chr24 (44569910-44570059) | |
| 26-175, gnl|danRer3|chrNA (52609839-52609716) | |
| 26-175, gnl|dasNov1|scaffold_1805 (146208-146059) | |
| 26-175, gnl|echTel1|scaffold_304397 (8923-9034) | |
| 26-175, gnl|fr1|chrUn (44575681-44575538) | |
| 26-175, gnl|galGal2|chr20 (11544613-11544454) | |
| 26-175, gnl|hg17|chr20 (54381840-54381989) | |
| 26-175, gnl|Hg17|chr20 (54382019-54381870) | |
| 26-175, gnl|loxAfr1|scaffold_61591 (5066-5156) | |
| 26-175, gnl|mm7|chr2 (172152396-172152527) | |
| 26-175, gnl|Mm7|chr2 (172152557-172152408) | |
| 26-175, gnl|monDom2|scaffold_1 (169623186-169623350) | |
| 26-175, gnl|oryCun1|scaffold_211767 (14730-14879) | |
| 26-175, gnl|panTro1|chr21 (57299567-57299716) | |
| 26-175, gnl|rheMac2|chr10 (8173246-8173097) | |
| 26-175, gnl|rn3|chr3 (163180386-163180517) | |
| 26-175, gnl|tetNig1|chr11 (2996982-2997116) | |
| 26-175, gnl|xenTro1|scaffold_1157 (193183-193045) | |
| 346-623, gnl|bosTau2|chr13 (40907320-40907589) | |
| 346-623, gnl|Hg17|chr20 (54378807-54378519) | |
| 346-623, gnl|Mm7|chr2 (172149638-172149379) | |
| 646-1153, gnl|bosTau2|chr13 (40907662-40908175) | |
| 646-1153, gnl|Hg17|chr20 (54378428-54377917) | |
| 646-1153, gnl|Mm7|chr2 (172149331-172148880) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| med (0.232504) | |
| tes (0.207814) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ldo (0.0970026) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| tes (0.207814) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ldo (0.0970026) |