Ss1.1-Pig4-TMW8025O13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGACTTTGCAGCAGGAGCTGGAATCCCTTCCAACCACCAAGATGGCTCAAACTAACCC CATGCCGGGGTCTGTGGGGCCATGGAAGATAACCATCTATGACCAGGAGAACTTCCAGGG CAAGAGGATGGAGTTCACCAGCTCCTGCCCAAATGTCTCTGAGCGCAGTTTTGATAATGT TCGGTCACTCAAGGTGGAGTGTGGCGCCTGGGTTGGTTATGAACATACCAGCTTCTGTGG GCAACAATTTGTCCTGGAGAGAGGAGAGTACCCTCGCTGGGATGCCTGGAGCGGGAGTAA TGCCTACCACATTGAGCGACTCATGTCCTTCCGCCCCATCTGTTCTGCTAATCATAAGGA GTCTAAGATTACCATCTTTGAGAAAGAAAACTTTATTGGACGCCAGTGGGAAATCTGTGA CGACTACCCCTCCTTGCAAGCCATGGGTTGGTTCAACAACGAAGTTGGTTCCATGAAGAT ACAATGTGGAGCCTGGGTTTGCTACCAGTATCCTGGATATCGTGGCTATCAGTATATCTT GGAATGTGACCATCATGGAGGAGACTATAAACACTGGAGAGAGTGGGGTTCTCATGCCCA GACTTCCCAGATTCAATCGATTCGCCGTATCCAACAGTAGTGGATTAAAAGCTCCAAGTA AGAATTCCTCAGGCATGAGACCTTGCTAAGTAATCTAGAATGAGTTTTATGTTCTGCTCA GACATTGCTTCCAAATGTTAGCTGCCGATATCCACAATAAATGTCATTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAATACAAATCACATTTATATGGCTGAGATAAGCATCG ATAAAACTCCACAAGTTCCCTTCTATGTCCTTGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGACTTTGCAGCAGGAGCTGGAATCCCTTCCAACCACCAAGATGGCTCAAACTAACCC CATGCCGGGGTCTGTGGGGCCATGGAAGATAACCATCTATGACCAGGAGAACTTCCAGGG CAAGAGGATGGAGTTCACCAGCTCCTGCCCAAATGTCTCTGAGCGCAGTTTTGATAATGT TCGGTCACTCAAGGTGGAGTGTGGCGCCTGGGTTGGTTATGAACATACCAGCTTCTGTGG GCAACAATTTGTCCTGGAGAGAGGAGAGTACCCTCGCTGGGATGCCTGGAGCGGGAGTAA TGCCTACCACATTGAGCGACTCATGTCCTTCCGCCCCATCTGTTCTGCTAATCATAAGGA GTCTAAGATTACCATCTTTGAGAAAGAAAACTTTATTGGACGCCAGTGGGAAATCTGTGA CGACTACCCCTCCTTGCAAGCCATGGGTTGGTTCAACAACGAAGTTGGTTCCATGAAGAT ACAATGTGGAGCCTGGGTTTGCTACCAGTATCCTGGATATCGTGGCTATCAGTATATCTT GGAATGTGACCATCATGGAGGAGACTATAAACACTGGAGAGAGTGGGGTTCTCATGCCCA GACTTCCCAGATTCAATCGATTCGCCGTATCCAACAGTAGTGGATTAAAAGCTCCAAGTA AGAATTCCTCAGGCATGAGACCTTGCTAAGTAATCTAGAATGAGTTTTATGTTCTGCTCA GACATTGCTTCCAAATGTTAGCTGCCGATATCCACAATAAATGTCATTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAATACAAATCACATTTATATGGCTGAGATAAGCATCG ATAAAACTCCACAAGTTCCCTTCTATGTCCTTGTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 202-349, gnl|bosTau2|chr19 (14304158-14304011) | |
| 202-349, gnl|canFam2|chr9 (46702058-46702222) | |
| 202-349, gnl|danRer3|chr15 (33551991-33552154) | |
| 202-349, gnl|dasNov1|scaffold_28974 (28981-29147) | |
| 202-349, gnl|echTel1|scaffold_281648 (4429-4595) | |
| 202-349, gnl|fr1|chrUn (44131681-44131846) | |
| 202-349, gnl|galGal2|chr19 (5566856-5567017) | |
| 202-349, gnl|hg17|chr17 (24603193-24603359) | |
| 202-349, gnl|Hg17|chr17 (24603202-24603349) | |
| 202-349, gnl|loxAfr1|scaffold_476 (115218-115052) | |
| 202-349, gnl|mm7|chr11 (77802622-77802458) | |
| 202-349, gnl|Mm7|chr11 (77802611-77802464) | |
| 202-349, gnl|monDom2|scaffold_44 (15328276-15328444) | |
| 202-349, gnl|oryCun1|scaffold_188160 (10162-10328) | |
| 202-349, gnl|panTro1|chr19 (27947253-27947419) | |
| 202-349, gnl|rheMac2|chr16 (24466152-24466318) | |
| 202-349, gnl|rn3|chr10 (63775116-63774952) | |
| 202-349, gnl|tetNig1|chr7 (7581676-7581841) | |
| 202-349, gnl|xenTro1|scaffold_370 (248820-248656) | |
| 350-492, gnl|bosTau2|chr19 (14302221-14302079) | |
| 350-492, gnl|canFam2|chr9 (46702924-46703076) | |
| 350-492, gnl|danRer3|chr15 (33554544-33554696) | |
| 350-492, gnl|echTel1|scaffold_281648 (6542-6694) | |
| 350-492, gnl|fr1|chrUn (44131921-44132073) | |
| 350-492, gnl|galGal2|chr19 (5567445-5567596) | |
| 350-492, gnl|hg17|chr17 (24604781-24604933) | |
| 350-492, gnl|Hg17|chr17 (24604784-24604926) | |
| 350-492, gnl|loxAfr1|scaffold_8453 (43429-43277) | |
| 350-492, gnl|mm7|chr11 (77801110-77800958) | |
| 350-492, gnl|Mm7|chr11 (77801105-77800963) | |
| 350-492, gnl|monDom2|scaffold_44 (15329156-15329308) | |
| 350-492, gnl|oryCun1|scaffold_188160 (12235-12387) | |
| 350-492, gnl|panTro1|chr19 (27948845-27948997) | |
| 350-492, gnl|rheMac2|chr16 (24467867-24468019) | |
| 350-492, gnl|rn3|chr10 (63773463-63773311) | |
| 350-492, gnl|tetNig1|chr7 (7581920-7582072) | |
| 350-492, gnl|xenTro1|scaffold_370 (248203-248051) | |
| 493-876, gnl|bosTau2|chr19 (14301639-14301246) | |
| 493-876, gnl|Hg17|chr17 (24605346-24606353) | |
| 493-876, gnl|Mm7|chr11 (77800477-77800119) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 202-349, gnl|bosTau2|chr19 (14304158-14304011) | |
| 202-349, gnl|canFam2|chr9 (46702058-46702222) | |
| 202-349, gnl|danRer3|chr15 (33551991-33552154) | |
| 202-349, gnl|dasNov1|scaffold_28974 (28981-29147) | |
| 202-349, gnl|echTel1|scaffold_281648 (4429-4595) | |
| 202-349, gnl|fr1|chrUn (44131681-44131846) | |
| 202-349, gnl|galGal2|chr19 (5566856-5567017) | |
| 202-349, gnl|hg17|chr17 (24603193-24603359) | |
| 202-349, gnl|Hg17|chr17 (24603202-24603349) | |
| 202-349, gnl|loxAfr1|scaffold_476 (115218-115052) | |
| 202-349, gnl|mm7|chr11 (77802622-77802458) | |
| 202-349, gnl|Mm7|chr11 (77802611-77802464) | |
| 202-349, gnl|monDom2|scaffold_44 (15328276-15328444) | |
| 202-349, gnl|oryCun1|scaffold_188160 (10162-10328) | |
| 202-349, gnl|panTro1|chr19 (27947253-27947419) | |
| 202-349, gnl|rheMac2|chr16 (24466152-24466318) | |
| 202-349, gnl|rn3|chr10 (63775116-63774952) | |
| 202-349, gnl|tetNig1|chr7 (7581676-7581841) | |
| 202-349, gnl|xenTro1|scaffold_370 (248820-248656) | |
| 350-492, gnl|bosTau2|chr19 (14302221-14302079) | |
| 350-492, gnl|canFam2|chr9 (46702924-46703076) | |
| 350-492, gnl|danRer3|chr15 (33554544-33554696) | |
| 350-492, gnl|echTel1|scaffold_281648 (6542-6694) | |
| 350-492, gnl|fr1|chrUn (44131921-44132073) | |
| 350-492, gnl|galGal2|chr19 (5567445-5567596) | |
| 350-492, gnl|hg17|chr17 (24604781-24604933) | |
| 350-492, gnl|Hg17|chr17 (24604784-24604926) | |
| 350-492, gnl|loxAfr1|scaffold_8453 (43429-43277) | |
| 350-492, gnl|mm7|chr11 (77801110-77800958) | |
| 350-492, gnl|Mm7|chr11 (77801105-77800963) | |
| 350-492, gnl|monDom2|scaffold_44 (15329156-15329308) | |
| 350-492, gnl|oryCun1|scaffold_188160 (12235-12387) | |
| 350-492, gnl|panTro1|chr19 (27948845-27948997) | |
| 350-492, gnl|rheMac2|chr16 (24467867-24468019) | |
| 350-492, gnl|rn3|chr10 (63773463-63773311) | |
| 350-492, gnl|tetNig1|chr7 (7581920-7582072) | |
| 350-492, gnl|xenTro1|scaffold_370 (248203-248051) | |
| 493-876, gnl|bosTau2|chr19 (14301639-14301246) | |
| 493-876, gnl|Hg17|chr17 (24605346-24606353) | |
| 493-876, gnl|Mm7|chr11 (77800477-77800119) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (21.8244) | |
| ret (0.128733) |