Non-Coding RNA Search

Ss1.1-Pig4-TMW8025O16.3

Sequence:


               
               TCTCAAAGTGAGCTGTGAGGAGTTCCTGCTGCTGGGGCTTCGATATCAGCATCTGAATCC
CCCCTCTCCCAACATTGATTACATCTCCATCCGACTGGACCTCACAGACAGCAGGAGTAA
GATCACGTACAAGTCAGAGAGTGCGTGGTTGCCCGTCTATATCAGAGGTGGCATTCCTAA
TCAGATCCCACGGGCTGCATTCATGGCCATGTTTATTCTGGAAGTGGATCAGTTCATCTT
GACCTCTTTGACTACATCAGTTCTGGACTGTGAAGAGGATGAGACCCCCAAACCCTTGCT
GGTGTTCAACATCACTAAAGCCCCGCTCCAGGGCTATGTGACTCACTTGTGGGATCACAC
CAGACCCGTGTCCTCCTTCACCTGGAAAGATCTAAATGACATGCAGATCGCATATCAGCC
ACCAAACAACAGCCATTCTGAGAGGAGACATTATGAGGTGGAAGTGGAGGTGTATGACTT
CTTCTTTGAAAAGAGCGCTCCTATTACAGTCCACATCTCCATTAGAACAGCAGATACAAA
TGCTCCACGAGTGTCCTGGAACACAGGTCTTAATCTCCTGGAGGGACAGTCTCGGGCCAT
CACTTGGGAACAGTTTCAAGTTGTTGACAATGATGACATTCATGCTGTCCAGCTGGTCAC
TGTGGATGGGCTGCAGCATGGACAACTCTCTCTAAGAGGAGGGAAGGGGTTTCTCTTCAC
TGTGGCTGACCTTCAGGCTGGAGTTGTTCGATATCATCATGACGACAGTGACTCCACCAA
AGACTTTGTGGTCTTCAGGATATTTGATGGCCAGCATAGCATCCGACACAAGTTTCCCAT
TAACATCTTGCCCAAAGATGATAGTCCTCCGTTCCTCATTACCAATGTTGTGATTGAACT
GGAGGAGGGACAGACTGTACCAATCCAGGGTTCCATGCTGAGAGCTTCAGACATGGACTC
CAGTGATGACTACGTCTTCTTTAATATCACAAAACCCCCACAGGCTGGAGAGATTGTGAA
GAAGCCAGCACCAGGACTGATAGGCTATCCTGTCCCTGGCTTCCTTCAGAAGGATCTATT
CAATGGCATCATTTACTATCGTCACTTTGGTGGAGAACTCTTTGAAGATTCTTTCGAATT
TGTCCTGTGGGACAGCCATGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCAAAGTGAGCTGTGAGGAGTTCCTGCTGCTGGGGCTTCGATATCAGCATCTGAATCC
CCCCTCTCCCAACATTGATTACATCTCCATCCGACTGGACCTCACAGACAGCAGGAGTAA
GATCACGTACAAGTCAGAGAGTGCGTGGTTGCCCGTCTATATCAGAGGTGGCATTCCTAA
TCAGATCCCACGGGCTGCATTCATGGCCATGTTTATTCTGGAAGTGGATCAGTTCATCTT
GACCTCTTTGACTACATCAGTTCTGGACTGTGAAGAGGATGAGACCCCCAAACCCTTGCT
GGTGTTCAACATCACTAAAGCCCCGCTCCAGGGCTATGTGACTCACTTGTGGGATCACAC
CAGACCCGTGTCCTCCTTCACCTGGAAAGATCTAAATGACATGCAGATCGCATATCAGCC
ACCAAACAACAGCCATTCTGAGAGGAGACATTATGAGGTGGAAGTGGAGGTGTATGACTT
CTTCTTTGAAAAGAGCGCTCCTATTACAGTCCACATCTCCATTAGAACAGCAGATACAAA
TGCTCCACGAGTGTCCTGGAACACAGGTCTTAATCTCCTGGAGGGACAGTCTCGGGCCAT
CACTTGGGAACAGTTTCAAGTTGTTGACAATGATGACATTCATGCTGTCCAGCTGGTCAC
TGTGGATGGGCTGCAGCATGGACAACTCTCTCTAAGAGGAGGGAAGGGGTTTCTCTTCAC
TGTGGCTGACCTTCAGGCTGGAGTTGTTCGATATCATCATGACGACAGTGACTCCACCAA
AGACTTTGTGGTCTTCAGGATATTTGATGGCCAGCATAGCATCCGACACAAGTTTCCCAT
TAACATCTTGCCCAAAGATGATAGTCCTCCGTTCCTCATTACCAATGTTGTGATTGAACT
GGAGGAGGGACAGACTGTACCAATCCAGGGTTCCATGCTGAGAGCTTCAGACATGGACTC
CAGTGATGACTACGTCTTCTTTAATATCACAAAACCCCCACAGGCTGGAGAGATTGTGAA
GAAGCCAGCACCAGGACTGATAGGCTATCCTGTCCCTGGCTTCCTTCAGAAGGATCTATT
CAATGGCATCATTTACTATCGTCACTTTGGTGGAGAACTCTTTGAAGATTCTTTCGAATT
TGTCCTGTGGGACAGCCATGAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958721|emb|CAI14375.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958721|emb|CAI14375.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               291-410, - strand, RNAz p=0.734365
               

               
               807-926, - strand, RNAz p=0.708268

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               291-410, - strand, RNAz p=0.734365
               

               
               807-926, - strand, RNAz p=0.708268

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               131-470, gnl|bosTau2|chr8 (13814201-13813863)
               

               
               131-470, gnl|Hg17|chr9 (14841608-14841273)
               

               
               131-470, gnl|Mm7|chr4 (82409603-82409265)
               


               
               687-1044, gnl|bosTau2|chr8 (13739492-13739135)
               

               
               687-1044, gnl|Hg17|chr9 (14832670-14832313)
               

               
               687-1044, gnl|Mm7|chr4 (82404030-82403673)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-470, gnl|bosTau2|chr8 (13814201-13813863)
               

               
               131-470, gnl|Hg17|chr9 (14841608-14841273)
               

               
               131-470, gnl|Mm7|chr4 (82409603-82409265)
               


               
               687-1044, gnl|bosTau2|chr8 (13739492-13739135)
               

               
               687-1044, gnl|Hg17|chr9 (14832670-14832313)
               

               
               687-1044, gnl|Mm7|chr4 (82404030-82403673)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	291-410, - strand, RNAz p=0.734365
	807-926, - strand, RNAz p=0.708268

	131-470, gnl\|bosTau2\|chr8 (13814201-13813863)
	131-470, gnl\|Hg17\|chr9 (14841608-14841273)
	131-470, gnl\|Mm7\|chr4 (82409603-82409265)

	687-1044, gnl\|bosTau2\|chr8 (13739492-13739135)
	687-1044, gnl\|Hg17\|chr9 (14832670-14832313)
	687-1044, gnl\|Mm7\|chr4 (82404030-82403673)