Ss1.1-Pig4-TMW8025O21.5
|
TTCAAGAGGAAAGTCTAGTTTCTTCAGTGATCGTGGGAGTGGATCAAGGGGAAGGTAAAT
GATTTATTTTCTCTACTTTCTTGTGAGTACAGTAAAGCAATTTAAAAATTGGTTTTTAAT
TTGTATTCTAACCATTAAGTGTATATTCCCCCCTTGGTAGATCACCTATTTGGATGTTGA
GTATTACATCTTTTTTTTTTTTTAAAGTAAGAAGTCTTTACTAAATTCAAATCGTTACGT
AGAAATTAGATGAGGATAAGAAGGTGTCCTTTGGCATAATGAAATCAGTTATTTTTATAT
TTCTCTAGTTTTATCTATTGTACTTTAAGAAGTTTAGTGAATGGCCTACTTTGGGTGACA
TTTTTGTGGGTATTCTAAACACCTTATTTTTGATTACACAAGTGTGGTGAACTGACCTCA
TGTGCCTAATAACTGTGGTTAGTCCTGTGTGTCCTGATTTTTCGAAAACAGGCCTAAAAC
TAAAAACATCTTAATCCAGGTAAGGATTATTTTCTACCTATTATCCAAAGTCTGTCACAC
AGGTGAATTGTCCTTTAACATCTTAATACAACTGGGACGATTGATATTTGGATGAGAACT
TTAAAGGTGTAATTATATAATTATATAAAGGTGTAATTTATATGCTGATTTCACATATAT
AAGACTCTCTTACCCCGAGGGTTTTTATTTTTATTGAAGTATAGTTGATTTTCAAAGATA
GTTTCAGATATAAAGACTTGGTTCTTAATTTCAGCATGTATGAGGTCTGTTTGTAGGCTG
TATGATTTTGTAAGAATGATGAAGGATACTGCATTGAGAAAATAAAGTAGCATAAATGAT
ATAGTTTGGTTAGAGGGCCTTATTTATCAAATAAAAGTGGGCCTGAATTGACCTGTTGAC
GTCCTAAATATTTTGACTTCTCTCCAGTTAGAGTTCTAGAGTAGCGGTAGGACTTGGATA
ATGGTTAGATGATATTCTGATTAATTGCTTGTGCTGTTCAGGTTTGATGACCGTGGACGA
AGTGACTATGACGGCATTGGCAGCCGTGGTGACAGAGGTGGCTTTGGCAAATATGAACGT
GGTGGAAATAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAAAACCACTTCCA
CCAAGTGAACGCTTGGAACAGGAACTCTTTTCTGGAGGCAACACTGGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCAAGAGGAAAGTCTAGTTTCTTCAGTGATCGTGGGAGTGGATCAAGGGGAAGGTAAAT
GATTTATTTTCTCTACTTTCTTGTGAGTACAGTAAAGCAATTTAAAAATTGGTTTTTAAT
TTGTATTCTAACCATTAAGTGTATATTCCCCCCTTGGTAGATCACCTATTTGGATGTTGA
GTATTACATCTTTTTTTTTTTTTAAAGTAAGAAGTCTTTACTAAATTCAAATCGTTACGT
AGAAATTAGATGAGGATAAGAAGGTGTCCTTTGGCATAATGAAATCAGTTATTTTTATAT
TTCTCTAGTTTTATCTATTGTACTTTAAGAAGTTTAGTGAATGGCCTACTTTGGGTGACA
TTTTTGTGGGTATTCTAAACACCTTATTTTTGATTACACAAGTGTGGTGAACTGACCTCA
TGTGCCTAATAACTGTGGTTAGTCCTGTGTGTCCTGATTTTTCGAAAACAGGCCTAAAAC
TAAAAACATCTTAATCCAGGTAAGGATTATTTTCTACCTATTATCCAAAGTCTGTCACAC
AGGTGAATTGTCCTTTAACATCTTAATACAACTGGGACGATTGATATTTGGATGAGAACT
TTAAAGGTGTAATTATATAATTATATAAAGGTGTAATTTATATGCTGATTTCACATATAT
AAGACTCTCTTACCCCGAGGGTTTTTATTTTTATTGAAGTATAGTTGATTTTCAAAGATA
GTTTCAGATATAAAGACTTGGTTCTTAATTTCAGCATGTATGAGGTCTGTTTGTAGGCTG
TATGATTTTGTAAGAATGATGAAGGATACTGCATTGAGAAAATAAAGTAGCATAAATGAT
ATAGTTTGGTTAGAGGGCCTTATTTATCAAATAAAAGTGGGCCTGAATTGACCTGTTGAC
GTCCTAAATATTTTGACTTCTCTCCAGTTAGAGTTCTAGAGTAGCGGTAGGACTTGGATA
ATGGTTAGATGATATTCTGATTAATTGCTTGTGCTGTTCAGGTTTGATGACCGTGGACGA
AGTGACTATGACGGCATTGGCAGCCGTGGTGACAGAGGTGGCTTTGGCAAATATGAACGT
GGTGGAAATAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAAAACCACTTCCA
CCAAGTGAACGCTTGGAACAGGAACTCTTTTCTGGAGGCAACACTGGG
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gi|61655633|gb|AAX49301.1| |
Protein identifier
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gi|61655633|gb|AAX49301.1| |
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41-155, + strand, RNAz p=0.91884 |
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487-602, + strand, RNAz p=0.950908 |
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487-602, - strand, RNAz p=0.950908 |
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487-602, + strand, RNAz p=0.99583 |
|
487-602, - strand, RNAz p=0.99583 |
|
1042-1164, + strand, RNAz p=0.853995 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
41-155, + strand, RNAz p=0.91884 |
|
487-602, + strand, RNAz p=0.950908 |
|
487-602, - strand, RNAz p=0.950908 |
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487-602, + strand, RNAz p=0.99583 |
|
487-602, - strand, RNAz p=0.99583 |
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1042-1164, + strand, RNAz p=0.853995 |
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1-184, gnl|bosTau2|chrX (28798091-28797906) |
| |
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235-602, gnl|bosTau2|chrX (28797881-28797496) |
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235-602, gnl|canFam2|chrX (35715537-35715863) |
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235-602, gnl|dasNov1|scaffold_28058 (9636-9305) |
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235-602, gnl|echTel1|scaffold_228724 (7278-7015) |
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235-602, gnl|Hg17|chrX (40957271-40957660) |
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235-602, gnl|hg17|chrY (13462170-13462377) |
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235-602, gnl|loxAfr1|scaffold_6969 (9308-9005) |
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235-602, gnl|mm7|chrX (11719784-11720006) |
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235-602, gnl|Mm7|chrX (11719742-11720102) |
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235-602, gnl|monDom2|scaffold_29 (22350941-22350668) |
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235-602, gnl|oryCun1|scaffold_213972 (22505-22825) |
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235-602, gnl|panTro1|chrY (14024020-14024227) |
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235-602, gnl|rheMac2|chrX (39110036-39110362) |
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235-602, gnl|rn3|chrX (21556308-21556072) |
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235-602, gnl|xenTro1|scaffold_16 (948525-948394) |
| |
|
623-1164, gnl|bosTau2|chrX (28797456-28796920) |
|
623-1164, gnl|Hg17|chrX (40957699-40958164) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-184, gnl|bosTau2|chrX (28798091-28797906) |
| |
|
235-602, gnl|bosTau2|chrX (28797881-28797496) |
|
235-602, gnl|canFam2|chrX (35715537-35715863) |
|
235-602, gnl|dasNov1|scaffold_28058 (9636-9305) |
|
235-602, gnl|echTel1|scaffold_228724 (7278-7015) |
|
235-602, gnl|Hg17|chrX (40957271-40957660) |
|
235-602, gnl|hg17|chrY (13462170-13462377) |
|
235-602, gnl|loxAfr1|scaffold_6969 (9308-9005) |
|
235-602, gnl|mm7|chrX (11719784-11720006) |
|
235-602, gnl|Mm7|chrX (11719742-11720102) |
|
235-602, gnl|monDom2|scaffold_29 (22350941-22350668) |
|
235-602, gnl|oryCun1|scaffold_213972 (22505-22825) |
|
235-602, gnl|panTro1|chrY (14024020-14024227) |
|
235-602, gnl|rheMac2|chrX (39110036-39110362) |
|
235-602, gnl|rn3|chrX (21556308-21556072) |
|
235-602, gnl|xenTro1|scaffold_16 (948525-948394) |
| |
|
623-1164, gnl|bosTau2|chrX (28797456-28796920) |
|
623-1164, gnl|Hg17|chrX (40957699-40958164) |
