Non-Coding RNA Search

Ss1.1-Pig4-TMW8025O22.3

Sequence:


               
               CTTTTTCTTTCTTTCCTTTGCTCACCCAGGGCTTAACGTGCAGTGGGGCAACTGTGATTG
AACCGTCCAAGGCTACCACGTGATCTTTTCCCCAGTCCAGCGCCTAGCTAGTCCCTTGCT
TGACTTTCCCCCTTGAGGAAAGCGGCATCCTTCATTCTCCTAGTTGTCCCCAAAGTGCTT
TGAGAATGATGTTCTTGGTAGTATAATTGGTTTCTGTTATTGTTTTGTTTCAACTCATGT
ACTCACTGAACTAAATTTAGAAACTTTAATAGCAAATTGTTTGGTGATTAACCCTTGCTG
CTTGTCCTTCTAACACACTGTTGATCGAGACGATTATGATGGAATTGATGATAAAAATAT
TTCTAGCATGATTCATAAGTTAAATGCTTCTCTGTTGATCCCTAACATGACTGATGTGTG
AAATGATGGTTCTTTAAAAAGCTGATTTTTTTTAATTGTAATTTGTTTAGGTTGATTTGT
CAGATGGGTTGATACAAATTTCAGTGTAAAATTCTGTATTAATGGTGCTTTTAAAATAAT
TTGAAAATAACCCCATGTTTTTGCCTTAGGGTAGTTAAATTACTGTATTCAGATAGTACT
GTGTCTGAATATTTCTGTCTATGAAAGCGAAATTTATTTTTAATTTTGTTTCCAAATATA
CATACAGAAAAAGTAATTTGTATTTTTTTTAAAGCAGGCATTTACACAAGAAGGAAAATG
TGAATATGTATCTTTAAAAATGTTGTACATACATATTAAAATTATTCATCCTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCTTTCTTTCCTTTGCTCACCCAGGGCTTAACGTGCAGTGGGGCAACTGTGATTG
AACCGTCCAAGGCTACCACGTGATCTTTTCCCCAGTCCAGCGCCTAGCTAGTCCCTTGCT
TGACTTTCCCCCTTGAGGAAAGCGGCATCCTTCATTCTCCTAGTTGTCCCCAAAGTGCTT
TGAGAATGATGTTCTTGGTAGTATAATTGGTTTCTGTTATTGTTTTGTTTCAACTCATGT
ACTCACTGAACTAAATTTAGAAACTTTAATAGCAAATTGTTTGGTGATTAACCCTTGCTG
CTTGTCCTTCTAACACACTGTTGATCGAGACGATTATGATGGAATTGATGATAAAAATAT
TTCTAGCATGATTCATAAGTTAAATGCTTCTCTGTTGATCCCTAACATGACTGATGTGTG
AAATGATGGTTCTTTAAAAAGCTGATTTTTTTTAATTGTAATTTGTTTAGGTTGATTTGT
CAGATGGGTTGATACAAATTTCAGTGTAAAATTCTGTATTAATGGTGCTTTTAAAATAAT
TTGAAAATAACCCCATGTTTTTGCCTTAGGGTAGTTAAATTACTGTATTCAGATAGTACT
GTGTCTGAATATTTCTGTCTATGAAAGCGAAATTTATTTTTAATTTTGTTTCCAAATATA
CATACAGAAAAAGTAATTTGTATTTTTTTTAAAGCAGGCATTTACACAAGAAGGAAAATG
TGAATATGTATCTTTAAAAATGTTGTACATACATATTAAAATTATTCATCCTAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-775, gnl|bosTau2|chr14 (15436867-15437612)
               

               
               1-775, gnl|Hg17|chr8 (62751136-62750372)
               

               
               1-775, gnl|Mm7|chr4 (9557805-9557068)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-775, gnl|bosTau2|chr14 (15436867-15437612)
               

               
               1-775, gnl|Hg17|chr8 (62751136-62750372)
               

               
               1-775, gnl|Mm7|chr4 (9557805-9557068)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fco (0.314416)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               ret (0.128733)

	1-775, gnl\|bosTau2\|chr14 (15436867-15437612)
	1-775, gnl\|Hg17\|chr8 (62751136-62750372)
	1-775, gnl\|Mm7\|chr4 (9557805-9557068)