Non-Coding RNA Search

Ss1.1-Pig4-TMW8025P10.5

Sequence:


               
               AAAGCCGCTTTTTTCTCTCCATGGTCATAACTGGGACCGGTTGAGGCGTGCCCCTGTGGA
AGCCAGCGAGCTGGGGCTGTGCTCGAAGCCAGGACACCCCCTGGGGGGAGCCAGCCCCGG
AGCCTGACCTGTGTGTCCGCATGGCCTGTTGTCCGGCCCCAAGGTGGGCCCCTGGGCAGG
GTTGTCAGCTGGGCTAGAGTCCTTAACTGCCGGCCAGCTCTCGTCGCTCCCTCTGCAGGC
GCTGCTCCATCTGAGTGGGGCGTGTTACTCTCTTTACTTCCTGGCCACGCTCCTGCTGAT
CGCGTATAAAAGCCAAGTTTTCACCTATCCTCACGGCTTCCTGGTCCTTGACCTGACTCT
GCTCTTCCTGATGGGGATTCTGGAAGCAACGCGGCTGTACCTCGGCACCAAGGGCAACCT
GACGGAGGCCGAGGTGCCGCTGGCCGCCAGCCTGGTCCTGACTGTGGGCGGCACCCTGCT
GGCCATCTACTTCCTGCTCTGGCAGACCCTGGTGCTGCGGGCAGACTGGGTCCTTGGCGC
CACGCTCCTGGTGCTCCATGGCCTGGAGGCCGTCCTGCAGGTGGTGGCCATCGCCGGCTT
TGTCAGCTAGGCCCCTGCGGCAGCCCCGGCCAGGAGCCCTTCCTGAGGGTGAGACGGCCT
GCCAGCCGTTGCCCAGGGGGAGGGCGTCCTTCTGCTGATGCGCCATGACCTTGGAGGGCC
TGGCGGCTTGGGTGATCTCTGAGTCCTTGAGGCGGAGATGGGCTCAGGAGCCAGGGCAGA
GCAAAATGCTGGGGCAGGCGGGGGCCCAGCGGAAGCCGGGACTGCCCGGGCGTCCTCCTC
AGGAAGCGCAGGCCCCGCTTGGCTGGCAGGACCTCCATTCAGCAACCGCCCTGCCCCCTG
GGCCGGAAGGCAGCGAGGGGCCGGGGACGAGCCCCGGGCAGACGCTGCTCTGCCTCTTCC
ACGAGAGAGTAATGCCAGAGAGCCAGGGCTTCTTCCCCCCGGGGACACAGGAAAGGCGAG
CTTGAAGCGCCAGTGCCCAGGGGACAGAGCGCCTCCCTCAGCAGGACGTTGGCCCTGGGC
ACCGGGGACTTCGCCAGGGGGACCTTTGCCCACTCACAGACCCACTCCAGTGCCTCTGGA
AGAAACCTGAGCTGATGTTTTCTGGCAACTTTCATTTGTTTCAGTTGTACATTTTCTGTG
TTTGGAATAATACCGTGTTTGAATATCTAGACATTTTCTCTTCACTGTAGTTTTTAAATA
AAGCGTTTATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCCGCTTTTTTCTCTCCATGGTCATAACTGGGACCGGTTGAGGCGTGCCCCTGTGGA
AGCCAGCGAGCTGGGGCTGTGCTCGAAGCCAGGACACCCCCTGGGGGGAGCCAGCCCCGG
AGCCTGACCTGTGTGTCCGCATGGCCTGTTGTCCGGCCCCAAGGTGGGCCCCTGGGCAGG
GTTGTCAGCTGGGCTAGAGTCCTTAACTGCCGGCCAGCTCTCGTCGCTCCCTCTGCAGGC
GCTGCTCCATCTGAGTGGGGCGTGTTACTCTCTTTACTTCCTGGCCACGCTCCTGCTGAT
CGCGTATAAAAGCCAAGTTTTCACCTATCCTCACGGCTTCCTGGTCCTTGACCTGACTCT
GCTCTTCCTGATGGGGATTCTGGAAGCAACGCGGCTGTACCTCGGCACCAAGGGCAACCT
GACGGAGGCCGAGGTGCCGCTGGCCGCCAGCCTGGTCCTGACTGTGGGCGGCACCCTGCT
GGCCATCTACTTCCTGCTCTGGCAGACCCTGGTGCTGCGGGCAGACTGGGTCCTTGGCGC
CACGCTCCTGGTGCTCCATGGCCTGGAGGCCGTCCTGCAGGTGGTGGCCATCGCCGGCTT
TGTCAGCTAGGCCCCTGCGGCAGCCCCGGCCAGGAGCCCTTCCTGAGGGTGAGACGGCCT
GCCAGCCGTTGCCCAGGGGGAGGGCGTCCTTCTGCTGATGCGCCATGACCTTGGAGGGCC
TGGCGGCTTGGGTGATCTCTGAGTCCTTGAGGCGGAGATGGGCTCAGGAGCCAGGGCAGA
GCAAAATGCTGGGGCAGGCGGGGGCCCAGCGGAAGCCGGGACTGCCCGGGCGTCCTCCTC
AGGAAGCGCAGGCCCCGCTTGGCTGGCAGGACCTCCATTCAGCAACCGCCCTGCCCCCTG
GGCCGGAAGGCAGCGAGGGGCCGGGGACGAGCCCCGGGCAGACGCTGCTCTGCCTCTTCC
ACGAGAGAGTAATGCCAGAGAGCCAGGGCTTCTTCCCCCCGGGGACACAGGAAAGGCGAG
CTTGAAGCGCCAGTGCCCAGGGGACAGAGCGCCTCCCTCAGCAGGACGTTGGCCCTGGGC
ACCGGGGACTTCGCCAGGGGGACCTTTGCCCACTCACAGACCCACTCCAGTGCCTCTGGA
AGAAACCTGAGCTGATGTTTTCTGGCAACTTTCATTTGTTTCAGTTGTACATTTTCTGTG
TTTGGAATAATACCGTGTTTGAATATCTAGACATTTTCTCTTCACTGTAGTTTTTAAATA
AAGCGTTTATCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14250466|gb|AAH08671.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14250466|gb|AAH08671.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               145-312, gnl|bosTau2|chr29 (44734142-44734310)
               

               
               145-312, gnl|Hg17|chr11 (690075-690236)
               

               
               145-312, gnl|Mm7|chr7 (137750834-137750995)
               


               
               404-836, gnl|bosTau2|chr29 (44735450-44735898)
               

               
               404-836, gnl|Hg17|chr11 (692944-693325)
               


               
               1098-1263, gnl|bosTau2|chr29 (44736016-44736185)
               

               
               1098-1263, gnl|Hg17|chr11 (693944-694108)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-312, gnl|bosTau2|chr29 (44734142-44734310)
               

               
               145-312, gnl|Hg17|chr11 (690075-690236)
               

               
               145-312, gnl|Mm7|chr7 (137750834-137750995)
               


               
               404-836, gnl|bosTau2|chr29 (44735450-44735898)
               

               
               404-836, gnl|Hg17|chr11 (692944-693325)
               


               
               1098-1263, gnl|bosTau2|chr29 (44736016-44736185)
               

               
               1098-1263, gnl|Hg17|chr11 (693944-694108)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               pla (0.267344)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	145-312, gnl\|bosTau2\|chr29 (44734142-44734310)
	145-312, gnl\|Hg17\|chr11 (690075-690236)
	145-312, gnl\|Mm7\|chr7 (137750834-137750995)

	404-836, gnl\|bosTau2\|chr29 (44735450-44735898)
	404-836, gnl\|Hg17\|chr11 (692944-693325)

	1098-1263, gnl\|bosTau2\|chr29 (44736016-44736185)
	1098-1263, gnl\|Hg17\|chr11 (693944-694108)

	fce (0.271592)
	pla (0.267344)
	mcp (0.170648)
	eye (0.170503)
	cbr (0.127975)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)