Non-Coding RNA Search

Ss1.1-Pig4-TMW8025P11.3

Sequence:


               
               GAAATTTTGGTTAATCGCTTAGGGTTGGGGTCATGGAAACGATGTTGCAAATCACAAGAT
ATTTCAGTTTAAAGACTGCTGCTAAGGACTAACAGAAGGTTGGGTTATTTTTCCTCTCCT
CTGCACTAAGCTGTTTTGAAGTTGGGCATGCATCTTTCATGCACTGTGTATTTAAACTCT
CTTTCCCTTTTGGGCTGGAACAAAACATTTATATAAATTCTTTTCTATCCAAACAGATTG
AAGCTTGCAATCTCTGGTTTGTTTAAAATAAGATAGTAAGGATTCCAGATTTGGACAGGG
GGGGAAAAATATATATATATATATATATATATATATATATGTATGTATGCACTTATATAT
AGCCCTTTTTTATTACAAAATATTTTTTTCCTGGGCTATTTTGGGTTTGGCTTATTTTTC
AAAAGCCAGCCTGTTGTTTATACTCATGGATAAAACCTAACTGCTCCCACCCTACCCTCT
TTGCTTCACAATGTACAGAAAGACATAGGTTTTTCTCCAGAAGAAAGAATATCTGCTGAA
TTTATCTGGATATTGTTTTTCCTCAACGCTGACATATGTACTGTGTGGAGAGACTTCACA
TAATCAGTTTTATAAGATGACCTGTGTTGTTTTCTCCTCCTGTCCTTTCCAAGTGTCTCT
GTGTGTGTGATTTTTAAAAGATCTTTTCCAGAGGCAGATTCTTAATAGCTCTTTTAAAGT
AAACTCAGAGTCCACCAGGAGAAACATAAAGGAATATAGAGTCAAGAACACTTAGATTCT
TCTTGTTCCTCATAGTAGACTATCTGTGCTTAAACCACAGTGTCCCTCTGTTACCTTATC
TGTCCCTCTGCTGAAAGGAAGCATTGTCCTGCCTTTTTGATTGGAAATTAATTTTTGTGA
GAACATGCTGTGATGTCACAAGTACTCACAAGGCTTGGCTGCATTAGGGAGGAGAATAAT
GTGGATTCTTGTGAACTTGTAACATTGGATTCCTTGGCCCCATGGAAGATAAGTAACTGT
AGATGTGGATTTTTCTTTTCCTTTAGGATTTTAAAAGTATTTAGGACTATTTAGCTATAA
ATGTTTTCAAACAGTGGTTTCCACTTTTACCAGAGACCACAGTCAAAACAAAAAAAGAAA
CCCATCCATCTTCTTCTTCTCTTTTTTAAACCAGCAGTGTTTATGTTTGGGCATAAAAAT
ATAGTTGATCAAGCTAAAAGAGAGTGTATTTTTTCTGATGTGGTAACTACACACCCTTAC
TAGCTTTGAGAATCCCCCAAATAACATTTTTTTTTTTTTGTAAAGGTTTCCGACCATACT
AACAGTCTTTCTTAACTGATTAAAATGCTCATTTATGTTTATTGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATTTTGGTTAATCGCTTAGGGTTGGGGTCATGGAAACGATGTTGCAAATCACAAGAT
ATTTCAGTTTAAAGACTGCTGCTAAGGACTAACAGAAGGTTGGGTTATTTTTCCTCTCCT
CTGCACTAAGCTGTTTTGAAGTTGGGCATGCATCTTTCATGCACTGTGTATTTAAACTCT
CTTTCCCTTTTGGGCTGGAACAAAACATTTATATAAATTCTTTTCTATCCAAACAGATTG
AAGCTTGCAATCTCTGGTTTGTTTAAAATAAGATAGTAAGGATTCCAGATTTGGACAGGG
GGGGAAAAATATATATATATATATATATATATATATATATGTATGTATGCACTTATATAT
AGCCCTTTTTTATTACAAAATATTTTTTTCCTGGGCTATTTTGGGTTTGGCTTATTTTTC
AAAAGCCAGCCTGTTGTTTATACTCATGGATAAAACCTAACTGCTCCCACCCTACCCTCT
TTGCTTCACAATGTACAGAAAGACATAGGTTTTTCTCCAGAAGAAAGAATATCTGCTGAA
TTTATCTGGATATTGTTTTTCCTCAACGCTGACATATGTACTGTGTGGAGAGACTTCACA
TAATCAGTTTTATAAGATGACCTGTGTTGTTTTCTCCTCCTGTCCTTTCCAAGTGTCTCT
GTGTGTGTGATTTTTAAAAGATCTTTTCCAGAGGCAGATTCTTAATAGCTCTTTTAAAGT
AAACTCAGAGTCCACCAGGAGAAACATAAAGGAATATAGAGTCAAGAACACTTAGATTCT
TCTTGTTCCTCATAGTAGACTATCTGTGCTTAAACCACAGTGTCCCTCTGTTACCTTATC
TGTCCCTCTGCTGAAAGGAAGCATTGTCCTGCCTTTTTGATTGGAAATTAATTTTTGTGA
GAACATGCTGTGATGTCACAAGTACTCACAAGGCTTGGCTGCATTAGGGAGGAGAATAAT
GTGGATTCTTGTGAACTTGTAACATTGGATTCCTTGGCCCCATGGAAGATAAGTAACTGT
AGATGTGGATTTTTCTTTTCCTTTAGGATTTTAAAAGTATTTAGGACTATTTAGCTATAA
ATGTTTTCAAACAGTGGTTTCCACTTTTACCAGAGACCACAGTCAAAACAAAAAAAGAAA
CCCATCCATCTTCTTCTTCTCTTTTTTAAACCAGCAGTGTTTATGTTTGGGCATAAAAAT
ATAGTTGATCAAGCTAAAAGAGAGTGTATTTTTTCTGATGTGGTAACTACACACCCTTAC
TAGCTTTGAGAATCCCCCAAATAACATTTTTTTTTTTTTGTAAAGGTTTCCGACCATACT
AACAGTCTTTCTTAACTGATTAAAATGCTCATTTATGTTTATTGAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-317, + strand, RNAz p=0.813814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-317, + strand, RNAz p=0.813814

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-317, gnl|bosTau2|chr23 (28473661-28473344)
               

               
               1-317, gnl|canFam2|chr35 (23578860-23579469)
               

               
               1-317, gnl|dasNov1|scaffold_18991 (39628-40186)
               

               
               1-317, gnl|echTel1|scaffold_230853 (6758-7336)
               

               
               1-317, gnl|galGal2|chr2 (58428452-58428009)
               

               
               1-317, gnl|hg17|chr6 (22258462-22259022)
               

               
               1-317, gnl|Hg17|chr6 (22258514-22258827)
               

               
               1-317, gnl|loxAfr1|scaffold_24867 (34357-34913)
               

               
               1-317, gnl|mm7|chr13 (27781640-27781003)
               

               
               1-317, gnl|Mm7|chr13 (27781578-27781250)
               

               
               1-317, gnl|monDom2|scaffold_3 (111897551-111898099)
               

               
               1-317, gnl|panTro1|chr5 (22671569-22672129)
               

               
               1-317, gnl|rheMac2|chr4 (22132056-22132620)
               

               
               1-317, gnl|rn3|chr17 (42740631-42741244)
               


               
               366-787, gnl|bosTau2|chr23 (28473331-28472899)
               

               
               366-787, gnl|Hg17|chr6 (22258839-22259238)
               

               
               366-787, gnl|Mm7|chr13 (27781222-27780783)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-317, gnl|bosTau2|chr23 (28473661-28473344)
               

               
               1-317, gnl|canFam2|chr35 (23578860-23579469)
               

               
               1-317, gnl|dasNov1|scaffold_18991 (39628-40186)
               

               
               1-317, gnl|echTel1|scaffold_230853 (6758-7336)
               

               
               1-317, gnl|galGal2|chr2 (58428452-58428009)
               

               
               1-317, gnl|hg17|chr6 (22258462-22259022)
               

               
               1-317, gnl|Hg17|chr6 (22258514-22258827)
               

               
               1-317, gnl|loxAfr1|scaffold_24867 (34357-34913)
               

               
               1-317, gnl|mm7|chr13 (27781640-27781003)
               

               
               1-317, gnl|Mm7|chr13 (27781578-27781250)
               

               
               1-317, gnl|monDom2|scaffold_3 (111897551-111898099)
               

               
               1-317, gnl|panTro1|chr5 (22671569-22672129)
               

               
               1-317, gnl|rheMac2|chr4 (22132056-22132620)
               

               
               1-317, gnl|rn3|chr17 (42740631-42741244)
               


               
               366-787, gnl|bosTau2|chr23 (28473331-28472899)
               

               
               366-787, gnl|Hg17|chr6 (22258839-22259238)
               

               
               366-787, gnl|Mm7|chr13 (27781222-27780783)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-317, gnl\|bosTau2\|chr23 (28473661-28473344)
	1-317, gnl\|canFam2\|chr35 (23578860-23579469)
	1-317, gnl\|dasNov1\|scaffold_18991 (39628-40186)
	1-317, gnl\|echTel1\|scaffold_230853 (6758-7336)
	1-317, gnl\|galGal2\|chr2 (58428452-58428009)
	1-317, gnl\|hg17\|chr6 (22258462-22259022)
	1-317, gnl\|Hg17\|chr6 (22258514-22258827)
	1-317, gnl\|loxAfr1\|scaffold_24867 (34357-34913)
	1-317, gnl\|mm7\|chr13 (27781640-27781003)
	1-317, gnl\|Mm7\|chr13 (27781578-27781250)
	1-317, gnl\|monDom2\|scaffold_3 (111897551-111898099)
	1-317, gnl\|panTro1\|chr5 (22671569-22672129)
	1-317, gnl\|rheMac2\|chr4 (22132056-22132620)
	1-317, gnl\|rn3\|chr17 (42740631-42741244)

	366-787, gnl\|bosTau2\|chr23 (28473331-28472899)
	366-787, gnl\|Hg17\|chr6 (22258839-22259238)
	366-787, gnl\|Mm7\|chr13 (27781222-27780783)