Ss1.1-Pig4-TMW8025P21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAAACGGTGGACATGTTCCATATCCTCACCAAGCAGGTCCAGAAGCCGTTCCTCAGAC CCGAACTTGGACCCCGATTGGCTGCGATGCTGAACTTCAATCTTCAACAACTCTGTGGCC CTAAGTGCCGTGACCTGAAAGTTGAAAACCCTGAGAAATACGGCTTTGAACCAAAGAAGC TGTTGGACCAACTGACAGATATTTACTTGCAGCTGGACTGTGCCCGGTTCGCTAAGGCCA TTGCCGATGACCAGAGATCCTACAGCAAAGAATTGTTCGAAGAAGTTATTTCAAAGATGC GGAAGGCAGGGATCAAATCCACGATAGCGATAGAGAAGTTTAAACTTCTGGCCGAGAAGG TAGAAGAGATAGTGGCCAAGAACGCACGCGCAGAGATCGACTACAGTGACGCCCCAGATG AGTTCAGAGACCCTCTGATGGACACCCTAATGACCGACCCTGTGCGGCTGCCTTCTGGCA CTATCATGGACCGATCCATCATTTTGCGGCACTTGCTGAACTCCCCCACAGACCCCTTCA ACCGACAGACACTGACAGAGAGCATGCTGGAACCAGTGCCAGAACTGAAAGAACAGATTC ATGCCTGGATGAGAGAGAAACAGAACAGTGATCATTAAACCATCCCCTTTGCCCACCCTC TGCTAGAAACAGCCAAGACCGGCAGGGCAGCAGAAGCAGCATCGGTGCTGCAAATGCTGT TCAAATGTTGGAGGCCACAAGTGGTCAAATACATCAAGAGCCCACCCAGAGTGACCAAAC AGTGGAGACCCGAGAGGACATGAATGAGAAGAGGAGCCCAATTCCTGTACATATATTTAA GTGAAAAACGTGGTCAAAAGCTTGAGGGACACAATTTATGATTGCTTGTGTAATAGAGCA CGTCCTTCGTATGTCACAGTTTGGGGCTTTTGCAACGGAAGTATCTTAGTGATCGATGAC AAATGGGTCTGGGCAGCATCCCCTTCATTTTTTTTTTTTTCCCTAAATCCAGTATCCGTT GATTTTGATTGTGATTAGAAAACTTGGACATTTTGCTGCTAAAGAATCTCCCCCCCGCCG GCCCCCCGCCCCCTTCCTGGTCCTACTTGCACTGCTGTGGATTTTTTTAAGAGAAGCAAA AACAAAAATAAATTCCTTTCCCTGGCCCTCCAAACATATATTCTGTGAGATAACTGTGCC TGCAACAAAGTGTTAATCCTGGGATCGTATTTTTATATCATATTCACATATTTGTTTTTT TAATTGGTGTTAGATGACATGATTAATAAAAAAGGCAAGATATTTTCAGAATTTGAATTT CAGTTATTTTTTTTTCTTTTGCAATGTCCCTTAAAATTTTTTTATTCTAAACAAAATGAA GAGAATCCTGTTGCTCTGGTCCTTGTAATAAGCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAAACGGTGGACATGTTCCATATCCTCACCAAGCAGGTCCAGAAGCCGTTCCTCAGAC CCGAACTTGGACCCCGATTGGCTGCGATGCTGAACTTCAATCTTCAACAACTCTGTGGCC CTAAGTGCCGTGACCTGAAAGTTGAAAACCCTGAGAAATACGGCTTTGAACCAAAGAAGC TGTTGGACCAACTGACAGATATTTACTTGCAGCTGGACTGTGCCCGGTTCGCTAAGGCCA TTGCCGATGACCAGAGATCCTACAGCAAAGAATTGTTCGAAGAAGTTATTTCAAAGATGC GGAAGGCAGGGATCAAATCCACGATAGCGATAGAGAAGTTTAAACTTCTGGCCGAGAAGG TAGAAGAGATAGTGGCCAAGAACGCACGCGCAGAGATCGACTACAGTGACGCCCCAGATG AGTTCAGAGACCCTCTGATGGACACCCTAATGACCGACCCTGTGCGGCTGCCTTCTGGCA CTATCATGGACCGATCCATCATTTTGCGGCACTTGCTGAACTCCCCCACAGACCCCTTCA ACCGACAGACACTGACAGAGAGCATGCTGGAACCAGTGCCAGAACTGAAAGAACAGATTC ATGCCTGGATGAGAGAGAAACAGAACAGTGATCATTAAACCATCCCCTTTGCCCACCCTC TGCTAGAAACAGCCAAGACCGGCAGGGCAGCAGAAGCAGCATCGGTGCTGCAAATGCTGT TCAAATGTTGGAGGCCACAAGTGGTCAAATACATCAAGAGCCCACCCAGAGTGACCAAAC AGTGGAGACCCGAGAGGACATGAATGAGAAGAGGAGCCCAATTCCTGTACATATATTTAA GTGAAAAACGTGGTCAAAAGCTTGAGGGACACAATTTATGATTGCTTGTGTAATAGAGCA CGTCCTTCGTATGTCACAGTTTGGGGCTTTTGCAACGGAAGTATCTTAGTGATCGATGAC AAATGGGTCTGGGCAGCATCCCCTTCATTTTTTTTTTTTTCCCTAAATCCAGTATCCGTT GATTTTGATTGTGATTAGAAAACTTGGACATTTTGCTGCTAAAGAATCTCCCCCCCGCCG GCCCCCCGCCCCCTTCCTGGTCCTACTTGCACTGCTGTGGATTTTTTTAAGAGAAGCAAA AACAAAAATAAATTCCTTTCCCTGGCCCTCCAAACATATATTCTGTGAGATAACTGTGCC TGCAACAAAGTGTTAATCCTGGGATCGTATTTTTATATCATATTCACATATTTGTTTTTT TAATTGGTGTTAGATGACATGATTAATAAAAAAGGCAAGATATTTTCAGAATTTGAATTT CAGTTATTTTTTTTTCTTTTGCAATGTCCCTTAAAATTTTTTTATTCTAAACAAAATGAA GAGAATCCTGTTGCTCTGGTCCTTGTAATAAGCCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 63-254, gnl|bosTau2|chr16 (31280748-31280939) | |
| 63-254, gnl|canFam2|chr5 (66327820-66328060) | |
| 63-254, gnl|danRer3|chrUn (158800125-158800341) | |
| 63-254, gnl|dasNov1|scaffold_61034 (1479-1255) | |
| 63-254, gnl|echTel1|scaffold_318664 (125068-125292) | |
| 63-254, gnl|fr1|chrUn (203454812-203455012) | |
| 63-254, gnl|galGal2|chr21 (3480395-3480614) | |
| 63-254, gnl|hg17|chr1 (10165437-10165661) | |
| 63-254, gnl|Hg17|chr1 (10165462-10165653) | |
| 63-254, gnl|loxAfr1|scaffold_19737 (45340-45564) | |
| 63-254, gnl|mm7|chr4 (148324871-148324650) | |
| 63-254, gnl|Mm7|chr4 (148324845-148324654) | |
| 63-254, gnl|monDom2|scaffold_177 (545655-545431) | |
| 63-254, gnl|oryCun1|scaffold_43873 (788-1011) | |
| 63-254, gnl|panTro1|chr1 (10365012-10365236) | |
| 63-254, gnl|rheMac2|chr1 (13257811-13258035) | |
| 63-254, gnl|rn3|chr5 (166421978-166421757) | |
| 63-254, gnl|tetNig1|chr9 (2491680-2491475) | |
| 63-254, gnl|xenTro1|scaffold_745 (282684-282907) | |
| 574-1416, gnl|bosTau2|chr16 (31288510-31289354) | |
| 574-1416, gnl|Hg17|chr1 (10174216-10175031) | |
| 574-1416, gnl|Mm7|chr4 (148319282-148318515) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 63-254, gnl|bosTau2|chr16 (31280748-31280939) | |
| 63-254, gnl|canFam2|chr5 (66327820-66328060) | |
| 63-254, gnl|danRer3|chrUn (158800125-158800341) | |
| 63-254, gnl|dasNov1|scaffold_61034 (1479-1255) | |
| 63-254, gnl|echTel1|scaffold_318664 (125068-125292) | |
| 63-254, gnl|fr1|chrUn (203454812-203455012) | |
| 63-254, gnl|galGal2|chr21 (3480395-3480614) | |
| 63-254, gnl|hg17|chr1 (10165437-10165661) | |
| 63-254, gnl|Hg17|chr1 (10165462-10165653) | |
| 63-254, gnl|loxAfr1|scaffold_19737 (45340-45564) | |
| 63-254, gnl|mm7|chr4 (148324871-148324650) | |
| 63-254, gnl|Mm7|chr4 (148324845-148324654) | |
| 63-254, gnl|monDom2|scaffold_177 (545655-545431) | |
| 63-254, gnl|oryCun1|scaffold_43873 (788-1011) | |
| 63-254, gnl|panTro1|chr1 (10365012-10365236) | |
| 63-254, gnl|rheMac2|chr1 (13257811-13258035) | |
| 63-254, gnl|rn3|chr5 (166421978-166421757) | |
| 63-254, gnl|tetNig1|chr9 (2491680-2491475) | |
| 63-254, gnl|xenTro1|scaffold_745 (282684-282907) | |
| 574-1416, gnl|bosTau2|chr16 (31288510-31289354) | |
| 574-1416, gnl|Hg17|chr1 (10174216-10175031) | |
| 574-1416, gnl|Mm7|chr4 (148319282-148318515) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| sme (0.305437) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| aor (0.195274) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| cov (0.132153) | |
| thg (0.126791) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| aor (0.195274) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| cov (0.132153) | |
| thg (0.126791) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| eje (0.0988338) |