Non-Coding RNA Search

Ss1.1-Pig4-TMW8026A18.3

Sequence:


               
               GCGCTGGTGGCGGCTGCTGCTGCGGTGTCTGTGGGGACAGAGACGGTGGAAGTGCCATCT
TCGGCTCGGTTGGCCCAGACAGCGGCTCATGGCATTGAGTGGCATCCATCGTCAGGTCAT
TAACTGAAGAAAAAATAAATAGCTATGCAAAATTCTCACATGGATGAGTACAGAAATTCT
AATAATGGCAGCACAGGCAACAGTTCAGAGGTAGTGATAGAACAGTCTGCTGATTTCAGT
ACTGAAATTATGAACGTTACGGAAATGGAACAGTCACCTGATGGATCTCCTACAGTGACT
ACAACTACAGAAGAAAATGAAACGGCAAATACTGTGGACCTTCCTGTGACAGAAACAGAA
GCAAATTTCCCTCCAGAATATGAAAAGTTTTGGAAAACTGTAGAAAATAATCCTCAGGAT
TTTACAGGCTGGGTATATTTGCTTCAGTATGTAGAACAGGAGAATCACTTGATGGCTGCC
AGGAAAGCGTTTGACAAATTTTTCATACACTATCCGTATTGCTATGGTTATTGGAAAAAG
TATGCAGACCTTGAAAAGCGGCATGACAACATTAAACAATCAGATGAGGTGCGTTAAACC
TCTACAGTTTGTCAAGCTTTGCAGTGCAAGCCTCTGTATTACACTGCAGCTTAACAAGTA
GGGCAGGGCTTTTCTCTCACTTACATTTATTTCTCATTTTCCAAACAATATAGTTGGTTT
GCTAGTCACATTTGCTACGTCTTATTGCATTTTTGGTCAGACGCTGTCATTGATGCTCTA
ATGGGTCTGTGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTGGTGGCGGCTGCTGCTGCGGTGTCTGTGGGGACAGAGACGGTGGAAGTGCCATCT
TCGGCTCGGTTGGCCCAGACAGCGGCTCATGGCATTGAGTGGCATCCATCGTCAGGTCAT
TAACTGAAGAAAAAATAAATAGCTATGCAAAATTCTCACATGGATGAGTACAGAAATTCT
AATAATGGCAGCACAGGCAACAGTTCAGAGGTAGTGATAGAACAGTCTGCTGATTTCAGT
ACTGAAATTATGAACGTTACGGAAATGGAACAGTCACCTGATGGATCTCCTACAGTGACT
ACAACTACAGAAGAAAATGAAACGGCAAATACTGTGGACCTTCCTGTGACAGAAACAGAA
GCAAATTTCCCTCCAGAATATGAAAAGTTTTGGAAAACTGTAGAAAATAATCCTCAGGAT
TTTACAGGCTGGGTATATTTGCTTCAGTATGTAGAACAGGAGAATCACTTGATGGCTGCC
AGGAAAGCGTTTGACAAATTTTTCATACACTATCCGTATTGCTATGGTTATTGGAAAAAG
TATGCAGACCTTGAAAAGCGGCATGACAACATTAAACAATCAGATGAGGTGCGTTAAACC
TCTACAGTTTGTCAAGCTTTGCAGTGCAAGCCTCTGTATTACACTGCAGCTTAACAAGTA
GGGCAGGGCTTTTCTCTCACTTACATTTATTTCTCATTTTCCAAACAATATAGTTGGTTT
GCTAGTCACATTTGCTACGTCTTATTGCATTTTTGGTCAGACGCTGTCATTGATGCTCTA
ATGGGTCTGTGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34865278|ref|XP_343071.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34865278|ref|XP_343071.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               349-462, + strand, RNAz p=0.993482
               

               
               587-705, - strand, RNAz p=0.908998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-462, + strand, RNAz p=0.993482
               

               
               587-705, - strand, RNAz p=0.908998

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017922, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017922, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               113-462, gnl|bosTau2|chr21 (37196358-37196707)
               

               
               113-462, gnl|Hg17|chr14 (44634171-44634516)
               

               
               113-462, gnl|Mm7|chr12 (62981548-62981897)
               


               
               587-828, gnl|bosTau2|chr21 (37197888-37198129)
               

               
               587-828, gnl|Hg17|chr14 (44635375-44635616)
               

               
               587-828, gnl|Mm7|chr12 (62982631-62982872)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-462, gnl|bosTau2|chr21 (37196358-37196707)
               

               
               113-462, gnl|Hg17|chr14 (44634171-44634516)
               

               
               113-462, gnl|Mm7|chr12 (62981548-62981897)
               


               
               587-828, gnl|bosTau2|chr21 (37197888-37198129)
               

               
               587-828, gnl|Hg17|chr14 (44635375-44635616)
               

               
               587-828, gnl|Mm7|chr12 (62982631-62982872)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ecc (0.115035)

	349-462, + strand, RNAz p=0.993482
	587-705, - strand, RNAz p=0.908998

	113-462, gnl\|bosTau2\|chr21 (37196358-37196707)
	113-462, gnl\|Hg17\|chr14 (44634171-44634516)
	113-462, gnl\|Mm7\|chr12 (62981548-62981897)

	587-828, gnl\|bosTau2\|chr21 (37197888-37198129)
	587-828, gnl\|Hg17\|chr14 (44635375-44635616)
	587-828, gnl\|Mm7\|chr12 (62982631-62982872)