Ss1.1-Pig4-TMW8026A21.5
|
GAAGCAAATGATAGTTTAACTTTTAGTTTAGAAATCCTAAAAGATATAAATTGTATTGCA
TATGCATTAAAAGTTTGTTTTATTTAATTTTATGTAGATGTGTAAAGTGTTAGGTAAAAT
TTTTTTCACTTACTCATTTACACGCCTTGTTACTTGAATCTCGTGGGGACAGCCTGCAGC
AGCAACGGGGACTGTAACACAGCCCTTTCACCGCGAGGCCCCGGGCCTCCGCTGGGCTGG
CGCCCAGGCGGTGCCGGTGCCAGTGGGCGCCGGAGGCTGGTGTGACGCCCACCCCACCCC
CACCCGGACGCGGCTCCTCAAGCCGGCTGCTGATAGCTTTCAACCTATCAGATCCTTCCT
TTGGTCGTCACAAACCTCTGGTCAGAACATGGAGAAGAAATCGCGTTTTAAAGCTTACGT
GGTAGACTGACTAAGCAGCTGTCGCGTGCATCTAAGGTTTGCTCGTTCTCACGCACCCCT
CTGAGTGCTCATCGTCACTTTAAATTGCAGCTACGCCCTATTTTTGTCTTTCTGAACATC
AGATGTACTATTGGTATAATTGCCTACCAAAAATAAGCCAAATAGTGCATTACACTAGCT
GGATCCCTGCTTCCGTGACAGAGGGCAGATGGCAGTACCTCGAGCGAGAGCCTCGTTTCT
CTTGTCCGGCCTGTGTCTGATCGAGTGACCCAGGACGCAGGCTCTCAATGTCAAGGGAGA
CTCTGCCTCATGTTGACTCAAGGTAGTTAGCTAATTGGAATCTGGTGACCGCGTGCAGTG
CTCAGAAACAAACCCTCTTGCTGCCGCTCCCGGTCTCTGCAGCGTTTCCTAATTCTAGCA
AAGCACAATTGCGGTGAGGTCGCAGTTGGGAAGAAGGAAGGGCAGTACAGTCTATGCATG
TTGTATGATAATGAGTGTTTACAGCCGCCTTCTCCTAAAACTAAACCTAAACCTGATACC
GGAGCGGCTCGTATTCCATTGTGTAGACTTATCAACTTTGCTAAGTGCTTTTTAGATTGC
TTAAAAATTTTTCAAGATTTTAAAAGATGTATAAGGTTAAGTTTGCAAATATAATGGAAA
TGCTGTATATCTTTTGAAGTGATAAAAATCCATGTTGGAATTTTAAAGAGAATACGTTGT
AATAATGCTGTTGTAAGTAATATTTTAATGTCTCTTTCTGCCTGTTTTCTATTTCAGCAC
ATTCATTGTGGTGAATGTCCATAGCATTATAATTGCTTAGCCATCGAATGATAACATTTG
TTAGTAGAGATTTAAAAATTTATTTGTGAAATTCTGCAGAATTCATTTTTCTATTTCCAA
TATTTGCTGAAGTTAAATAAAAATTTTCAAGCCGTTGATGTAATAAACTATGAAACCGAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGCAAATGATAGTTTAACTTTTAGTTTAGAAATCCTAAAAGATATAAATTGTATTGCA
TATGCATTAAAAGTTTGTTTTATTTAATTTTATGTAGATGTGTAAAGTGTTAGGTAAAAT
TTTTTTCACTTACTCATTTACACGCCTTGTTACTTGAATCTCGTGGGGACAGCCTGCAGC
AGCAACGGGGACTGTAACACAGCCCTTTCACCGCGAGGCCCCGGGCCTCCGCTGGGCTGG
CGCCCAGGCGGTGCCGGTGCCAGTGGGCGCCGGAGGCTGGTGTGACGCCCACCCCACCCC
CACCCGGACGCGGCTCCTCAAGCCGGCTGCTGATAGCTTTCAACCTATCAGATCCTTCCT
TTGGTCGTCACAAACCTCTGGTCAGAACATGGAGAAGAAATCGCGTTTTAAAGCTTACGT
GGTAGACTGACTAAGCAGCTGTCGCGTGCATCTAAGGTTTGCTCGTTCTCACGCACCCCT
CTGAGTGCTCATCGTCACTTTAAATTGCAGCTACGCCCTATTTTTGTCTTTCTGAACATC
AGATGTACTATTGGTATAATTGCCTACCAAAAATAAGCCAAATAGTGCATTACACTAGCT
GGATCCCTGCTTCCGTGACAGAGGGCAGATGGCAGTACCTCGAGCGAGAGCCTCGTTTCT
CTTGTCCGGCCTGTGTCTGATCGAGTGACCCAGGACGCAGGCTCTCAATGTCAAGGGAGA
CTCTGCCTCATGTTGACTCAAGGTAGTTAGCTAATTGGAATCTGGTGACCGCGTGCAGTG
CTCAGAAACAAACCCTCTTGCTGCCGCTCCCGGTCTCTGCAGCGTTTCCTAATTCTAGCA
AAGCACAATTGCGGTGAGGTCGCAGTTGGGAAGAAGGAAGGGCAGTACAGTCTATGCATG
TTGTATGATAATGAGTGTTTACAGCCGCCTTCTCCTAAAACTAAACCTAAACCTGATACC
GGAGCGGCTCGTATTCCATTGTGTAGACTTATCAACTTTGCTAAGTGCTTTTTAGATTGC
TTAAAAATTTTTCAAGATTTTAAAAGATGTATAAGGTTAAGTTTGCAAATATAATGGAAA
TGCTGTATATCTTTTGAAGTGATAAAAATCCATGTTGGAATTTTAAAGAGAATACGTTGT
AATAATGCTGTTGTAAGTAATATTTTAATGTCTCTTTCTGCCTGTTTTCTATTTCAGCAC
ATTCATTGTGGTGAATGTCCATAGCATTATAATTGCTTAGCCATCGAATGATAACATTTG
TTAGTAGAGATTTAAAAATTTATTTGTGAAATTCTGCAGAATTCATTTTTCTATTTCCAA
TATTTGCTGAAGTTAAATAAAAATTTTCAAGCCGTTGATGTAATAAACTATGAAACCGAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-196, gnl|bosTau2|chr21 (46874794-46874989) |
|
3-196, gnl|canFam2|chr8 (73675981-73676469) |
|
3-196, gnl|dasNov1|scaffold_199698 (3122-3606) |
|
3-196, gnl|echTel1|scaffold_288321 (2501-2041) |
|
3-196, gnl|galGal2|chr5 (46570012-46570501) |
|
3-196, gnl|hg17|chr14 (102265243-102265716) |
|
3-196, gnl|Hg17|chr14 (102265259-102265453) |
|
3-196, gnl|loxAfr1|scaffold_14880 (11270-10786) |
|
3-196, gnl|mm7|chr12 (108630968-108631420) |
|
3-196, gnl|Mm7|chr12 (108630984-108631175) |
|
3-196, gnl|monDom2|scaffold_6 (86428202-86428732) |
|
3-196, gnl|oryCun1|scaffold_179037 (554-122) |
|
3-196, gnl|panTro1|chr15 (102873692-102874164) |
|
3-196, gnl|rheMac2|chr7 (166024521-166024990) |
|
3-196, gnl|rn3|chr6 (135867178-135867619) |
| |
|
470-1376, gnl|bosTau2|chr21 (46875250-46876149) |
|
470-1376, gnl|Hg17|chr14 (102265759-102266659) |
|
470-1376, gnl|Mm7|chr12 (108631449-108632307) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-196, gnl|bosTau2|chr21 (46874794-46874989) |
|
3-196, gnl|canFam2|chr8 (73675981-73676469) |
|
3-196, gnl|dasNov1|scaffold_199698 (3122-3606) |
|
3-196, gnl|echTel1|scaffold_288321 (2501-2041) |
|
3-196, gnl|galGal2|chr5 (46570012-46570501) |
|
3-196, gnl|hg17|chr14 (102265243-102265716) |
|
3-196, gnl|Hg17|chr14 (102265259-102265453) |
|
3-196, gnl|loxAfr1|scaffold_14880 (11270-10786) |
|
3-196, gnl|mm7|chr12 (108630968-108631420) |
|
3-196, gnl|Mm7|chr12 (108630984-108631175) |
|
3-196, gnl|monDom2|scaffold_6 (86428202-86428732) |
|
3-196, gnl|oryCun1|scaffold_179037 (554-122) |
|
3-196, gnl|panTro1|chr15 (102873692-102874164) |
|
3-196, gnl|rheMac2|chr7 (166024521-166024990) |
|
3-196, gnl|rn3|chr6 (135867178-135867619) |
| |
|
470-1376, gnl|bosTau2|chr21 (46875250-46876149) |
|
470-1376, gnl|Hg17|chr14 (102265759-102266659) |
|
470-1376, gnl|Mm7|chr12 (108631449-108632307) |
|
cbe (0.478469) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
fty (0.17584) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
cbe (0.478469) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
fty (0.17584) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
nbm (0.0993246) |
