Non-Coding RNA Search

Ss1.1-Pig4-TMW8026B03.3

Sequence:


               
               TTCATGGAGGTGTTCCTCCACGAAAAGCTAGTTATATTGAAGACCTGGTTTTGATGCTGC
CTCAGAACATTTGGGATAACCTATATAGCAGGTATGGAGGAGGACCAGCTGTCAACCATC
TGTACATTTGTCACACTTGCCAAATTGAGGCAGAGAAAATTGAAAAACGAAGAAAAACTG
AATTGGAAATTTTTATTCGGCTCAACAGAGCATTCCAAGAGGAGGACTCGCCAGCTACTT
TTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATG
GAGATCCTCCAGGTCCTATTGATAACACTAAAATTGCAATCACCAAATGTGGCAATGTCA
CACTTAGGCAAGGGGCAGATTCTGGTCAGATTTCTGAAGAAACGTGGAATTTTCTACAGT
CTATATATGGTGGAGGGCCTGAAGTCATCCTGCGGCCTCCTGTTGTTCATGTTGATCCTG
ATGTCCTACAAGCAGAAGAAAAAATTGAAGTAGAAACTCGGTCTTTGTAATTTTGAGGGT
ATAGAGGTCTGATGAGAAATCATTCTCACATCTTCTGACATATAGTCATGCAAAAACATT
CCTAAAAGCATGTTTATTTTCTTGATTTTTAATATTTTATCTTTTATTCCTTCTTACTGG
GCATTTTGAAAGAATGTGTTCAAATGTATAGTATTCTACAGGTTGGTATATTTAATGGTA
GATAACTTTCCGTAAAGTCTTTTGGTGTAATATTTTTGAAAGAGAAGGGGTAATTGTGAT
CATTTGGTAATGAGTTGGTTATCTTTGATATTTATACTACATATAAACCCATGAATCCTT
TGTAGCTTTGTAAATACTTTTGCTTTGAAAACTTTTTCATTATCCTAAATGATCATAACT
CTGACCAATCTTTTCAGTTCTTCAAAAACTTGATTTAATTGTATAGTTTTGACATGGCTT
CTTATAATATAAAGAGCCTATTTTAAATTGAGAGTTGTAGTCAGAAAAATGTTAATTTCC
TAAAGCTCAGGAAACTGTTAGGGTGTCAACTTCTTTTGCACTGCAGCATATAAACTAGCA
TATTAATATTTACAAGATGTCTTTTTGAATGTATCAAGGATGTATTTAGTTTGAGTGGAA
TTTGTGTCAGCAGATATTAGTAATTTATTGCCTCCTATACTGTAAAATATTAAATTTCAA
TTCCTATAACCCTGATTAGTAATCTTAATATCAGTAAAAAACTTAGAGTTAGTTTTAGGA
CACTTTGTTTTGAGAGCATGAAGTATAGACTGTCAATGAGATTGTTGATAAAGCTGAAGT
CTAAGCCTCTTGCAAATGATTTTTTAAATGAAACCTGCATAAAGTCTTTTTGAATAATAT
AGTATGCACTGCTATTTGCTTGATTATGTGATGTCAAAAGTTTAACTATATTCCAAGTAC
AAAACTAAACTGGATTACTTTGAGAATGTTGAACAGCATTCACAGTGGCTTTGTTTTGGT
TTGGGGCAGCTGCCACCAGCTAAAACAGCATTATTAAAATTAGTTCAATAAAAATGATTT
AAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATGGAGGTGTTCCTCCACGAAAAGCTAGTTATATTGAAGACCTGGTTTTGATGCTGC
CTCAGAACATTTGGGATAACCTATATAGCAGGTATGGAGGAGGACCAGCTGTCAACCATC
TGTACATTTGTCACACTTGCCAAATTGAGGCAGAGAAAATTGAAAAACGAAGAAAAACTG
AATTGGAAATTTTTATTCGGCTCAACAGAGCATTCCAAGAGGAGGACTCGCCAGCTACTT
TTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATG
GAGATCCTCCAGGTCCTATTGATAACACTAAAATTGCAATCACCAAATGTGGCAATGTCA
CACTTAGGCAAGGGGCAGATTCTGGTCAGATTTCTGAAGAAACGTGGAATTTTCTACAGT
CTATATATGGTGGAGGGCCTGAAGTCATCCTGCGGCCTCCTGTTGTTCATGTTGATCCTG
ATGTCCTACAAGCAGAAGAAAAAATTGAAGTAGAAACTCGGTCTTTGTAATTTTGAGGGT
ATAGAGGTCTGATGAGAAATCATTCTCACATCTTCTGACATATAGTCATGCAAAAACATT
CCTAAAAGCATGTTTATTTTCTTGATTTTTAATATTTTATCTTTTATTCCTTCTTACTGG
GCATTTTGAAAGAATGTGTTCAAATGTATAGTATTCTACAGGTTGGTATATTTAATGGTA
GATAACTTTCCGTAAAGTCTTTTGGTGTAATATTTTTGAAAGAGAAGGGGTAATTGTGAT
CATTTGGTAATGAGTTGGTTATCTTTGATATTTATACTACATATAAACCCATGAATCCTT
TGTAGCTTTGTAAATACTTTTGCTTTGAAAACTTTTTCATTATCCTAAATGATCATAACT
CTGACCAATCTTTTCAGTTCTTCAAAAACTTGATTTAATTGTATAGTTTTGACATGGCTT
CTTATAATATAAAGAGCCTATTTTAAATTGAGAGTTGTAGTCAGAAAAATGTTAATTTCC
TAAAGCTCAGGAAACTGTTAGGGTGTCAACTTCTTTTGCACTGCAGCATATAAACTAGCA
TATTAATATTTACAAGATGTCTTTTTGAATGTATCAAGGATGTATTTAGTTTGAGTGGAA
TTTGTGTCAGCAGATATTAGTAATTTATTGCCTCCTATACTGTAAAATATTAAATTTCAA
TTCCTATAACCCTGATTAGTAATCTTAATATCAGTAAAAAACTTAGAGTTAGTTTTAGGA
CACTTTGTTTTGAGAGCATGAAGTATAGACTGTCAATGAGATTGTTGATAAAGCTGAAGT
CTAAGCCTCTTGCAAATGATTTTTTAAATGAAACCTGCATAAAGTCTTTTTGAATAATAT
AGTATGCACTGCTATTTGCTTGATTATGTGATGTCAAAAGTTTAACTATATTCCAAGTAC
AAAACTAAACTGGATTACTTTGAGAATGTTGAACAGCATTCACAGTGGCTTTGTTTTGGT
TTGGGGCAGCTGCCACCAGCTAAAACAGCATTATTAAAATTAGTTCAATAAAAATGATTT
AAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q569A1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q569A1_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1427-1564, + strand, RNAz p=0.991304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1427-1564, + strand, RNAz p=0.991304

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015017, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015017, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1427-1564, gnl|bosTau2|chr11 (62888896-62889033)
               

               
               1427-1564, gnl|Hg17|chr1 (77873835-77873701)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1427-1564, gnl|bosTau2|chr11 (62888896-62889033)
               

               
               1427-1564, gnl|Hg17|chr1 (77873835-77873701)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cbe (2.15311)
               

               
               ret (0.643666)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (2.15311)
               

               
               ret (0.643666)
               

               
               liv (0.438853)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	1427-1564, gnl\|bosTau2\|chr11 (62888896-62889033)
	1427-1564, gnl\|Hg17\|chr1 (77873835-77873701)

	cbe (2.15311)
	ret (0.643666)
	liv (0.438853)
	kid (0.389206)
	elu (0.385356)
	rec (0.346141)
	fco (0.314416)
	tra (0.246184)
	tes (0.207814)
	fcc (0.197785)
	aor (0.195274)
	sin (0.174948)
	bfe (0.149858)
	lin (0.145603)
	lnt (0.142308)
	lyg (0.133103)
	sug (0.127291)
	eru (0.120048)
	spc (0.113366)