Non-Coding RNA Search

Ss1.1-Pig4-TMW8026B15.5

Sequence:


               
               GTCGGCCCGAGCGCGGCTGGGGTCGGGGAAAGAGAGGACGCCGCGGGTCAGGATGGTGCT
GGAGTGCGTGGCCCGGATCGTGAAGGTGCAGCTCCCCGCGTATCTTAAGCGGCTCCCAAT
CCCGGAGAGCATTACCGGGTTCGCCCGGCTCACAGTTTCAGAATGGCTTCGGTTATTGCC
TTTCCTTGGGGTACTTGCACTACTCGGCTACCTTGCGGTTCGTCCATTCCTCCCGAAGAA
AAAGCAACAGAAGGATAGCTTGATTAATCTTAAAATACAAAAGGAAAATCCCAAAGTGGT
GAATGAAATAAACATTGAAGATCTGTGTCTTACTAAAGCAGCTTACTGTAGGTGTTGGCG
TTCTAAGACGTTTCCTGCCTGTGATGGGTCACATAATAAACACAATGAATTGACAGGTGA
CAATGTGGGTCCACTAATACTGAAGAAGAAAGAAGTATAATAGTAATAAATTAGGATGAA
TTCAATTGTATGCTGTAAAATCTTATAACTATTTTTTCATTCTTTGTGTATAAAAGATCT
TTCAAATGGTGTTTTAATTATTGCTACTGGTTGAATAATTATTTCTGCCAATTTATTTTC
TTGCTACACTACTGTTTATATTTGATACTTTGTATATTCAGTCATTTACACAGAAATTAA
ATTGTGCAACTTTTTCATTCTGACATCAAGGAATTAGTGTATCTCTACAATAAAATCAAC
ACTTGATTTTAATTAATTGAGAAAAATCTAAGTTTTTGGCAGTGAGTCCAAAGCTATTTC
TTTGAATATCAGTATTTTCAACAGAATCTATACTTTAAAATTTTCTCCTTACACTATTTT
AAATATATAATTTTTTAGTGTTCCACTGTTTTGATCATTTGAAGTGATTTTTCCCCCTTT
GACCTTCATATTCCATTCTTTTTAGATCAGTAAGAAAAATAATACTCTTAAGAACTCCTT
GAGCTTTCAAAGGAAAACTCTTTTATTTATAAATATTGTTTTCTATAAATACGACTCTCC
CAATTTCAGAAAAGATTGGGACTGGGTATAAGAACAATTACTTATATTATAAAAGATTTG
TTTACTTTTCAAGGCTTATTTGTGTCTGTTTACATGTGTTGTGTGTATGTATCTTGAGCC
ATCGAACTCAGTGGCAAAGTGGGGTGAGTTGTCAGGAACTCTTAAAGCTAAACTCATGGG
GCAATTTGAAGTTCATTAGAAATAAAATATATAAAATAAAAATTTATATTAAAAAAAAAA
CAGTGTTTAAAATTGCGTCAATATGAACATTTTTTTCTCCTTATTACAGTGTAAAGCAAT
AAAACAAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGCCCGAGCGCGGCTGGGGTCGGGGAAAGAGAGGACGCCGCGGGTCAGGATGGTGCT
GGAGTGCGTGGCCCGGATCGTGAAGGTGCAGCTCCCCGCGTATCTTAAGCGGCTCCCAAT
CCCGGAGAGCATTACCGGGTTCGCCCGGCTCACAGTTTCAGAATGGCTTCGGTTATTGCC
TTTCCTTGGGGTACTTGCACTACTCGGCTACCTTGCGGTTCGTCCATTCCTCCCGAAGAA
AAAGCAACAGAAGGATAGCTTGATTAATCTTAAAATACAAAAGGAAAATCCCAAAGTGGT
GAATGAAATAAACATTGAAGATCTGTGTCTTACTAAAGCAGCTTACTGTAGGTGTTGGCG
TTCTAAGACGTTTCCTGCCTGTGATGGGTCACATAATAAACACAATGAATTGACAGGTGA
CAATGTGGGTCCACTAATACTGAAGAAGAAAGAAGTATAATAGTAATAAATTAGGATGAA
TTCAATTGTATGCTGTAAAATCTTATAACTATTTTTTCATTCTTTGTGTATAAAAGATCT
TTCAAATGGTGTTTTAATTATTGCTACTGGTTGAATAATTATTTCTGCCAATTTATTTTC
TTGCTACACTACTGTTTATATTTGATACTTTGTATATTCAGTCATTTACACAGAAATTAA
ATTGTGCAACTTTTTCATTCTGACATCAAGGAATTAGTGTATCTCTACAATAAAATCAAC
ACTTGATTTTAATTAATTGAGAAAAATCTAAGTTTTTGGCAGTGAGTCCAAAGCTATTTC
TTTGAATATCAGTATTTTCAACAGAATCTATACTTTAAAATTTTCTCCTTACACTATTTT
AAATATATAATTTTTTAGTGTTCCACTGTTTTGATCATTTGAAGTGATTTTTCCCCCTTT
GACCTTCATATTCCATTCTTTTTAGATCAGTAAGAAAAATAATACTCTTAAGAACTCCTT
GAGCTTTCAAAGGAAAACTCTTTTATTTATAAATATTGTTTTCTATAAATACGACTCTCC
CAATTTCAGAAAAGATTGGGACTGGGTATAAGAACAATTACTTATATTATAAAAGATTTG
TTTACTTTTCAAGGCTTATTTGTGTCTGTTTACATGTGTTGTGTGTATGTATCTTGAGCC
ATCGAACTCAGTGGCAAAGTGGGGTGAGTTGTCAGGAACTCTTAAAGCTAAACTCATGGG
GCAATTTGAAGTTCATTAGAAATAAAATATATAAAATAAAAATTTATATTAAAAAAAAAA
CAGTGTTTAAAATTGCGTCAATATGAACATTTTTTTCTCCTTATTACAGTGTAAAGCAAT
AAAACAAAATAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N5K1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N5K1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               565-681, - strand, RNAz p=0.515408

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               565-681, - strand, RNAz p=0.515408

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-188, gnl|bosTau2|chr6 (6976243-6976057)
               

               
               2-188, gnl|Hg17|chr4 (104147788-104147974)
               

               
               2-188, gnl|Mm7|chr3 (135217732-135217574)
               


               
               370-1232, gnl|bosTau2|chr6 (6964459-6963593)
               

               
               370-1232, gnl|Hg17|chr4 (104166088-104166926)
               

               
               370-1232, gnl|Mm7|chr3 (135203235-135202361)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-188, gnl|bosTau2|chr6 (6976243-6976057)
               

               
               2-188, gnl|Hg17|chr4 (104147788-104147974)
               

               
               2-188, gnl|Mm7|chr3 (135217732-135217574)
               


               
               370-1232, gnl|bosTau2|chr6 (6964459-6963593)
               

               
               370-1232, gnl|Hg17|chr4 (104166088-104166926)
               

               
               370-1232, gnl|Mm7|chr3 (135203235-135202361)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               tra (0.984737)
               

               
               mga (0.64082)
               

               
               ski (0.586941)
               

               
               cut (0.509771)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.984737)
               

               
               mga (0.64082)
               

               
               ski (0.586941)
               

               
               cut (0.509771)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	2-188, gnl\|bosTau2\|chr6 (6976243-6976057)
	2-188, gnl\|Hg17\|chr4 (104147788-104147974)
	2-188, gnl\|Mm7\|chr3 (135217732-135217574)

	370-1232, gnl\|bosTau2\|chr6 (6964459-6963593)
	370-1232, gnl\|Hg17\|chr4 (104166088-104166926)
	370-1232, gnl\|Mm7\|chr3 (135203235-135202361)

	tra (0.984737)
	mga (0.64082)
	ski (0.586941)
	cut (0.509771)
	cki (0.495704)
	cbe (0.478469)
	amn (0.417711)
	lyg (0.399308)
	kid (0.389206)
	ret (0.3862)
	thg (0.380373)
	mgm (0.360685)
	gul (0.355177)
	tbr (0.308356)
	bfe (0.299715)
	liv (0.292569)
	lin (0.291206)
	sug (0.254582)
	pgl (0.236967)
	mgp (0.230681)
	sag (0.182715)
	ill (0.175593)
	eye (0.170503)
	nje (0.16592)
	csp (0.161186)
	fco (0.157208)
	eli (0.151814)
	csk (0.140746)
	ova (0.129132)
	bla (0.124347)
	cbl (0.114797)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)