Non-Coding RNA Search

Ss1.1-Pig4-TMW8026B23.3

Sequence:


               
               GCCCCTCTGGGGGGCGCAGGAAGGCAGGCAGGAGGGGTTTAAGCCCCCTACCCTGTCTAA
GCAGGCTCCAGCCCACCCTCCCCCCCCCCCCCCGGAATCTACTGCAGTGATGGAAGTGCA
GAGTCACCTTTATCCAGGGGAGGCCCAGGTTCCCGGGGCAGCCACTGAGGGTGGGCTCGA
GTCCCTCCCAGTCCCTGTCCGCTTCTAGGCCTCCGTTTCTTCCCCTTCCCTCACGGGGCA
CTAATAACAAGGAGCTAGCCTTGCCCACTCCCACCCTTCTGCTCCTCCCCCGCCCCCCAA
GGTTCTGGTTCCATCTTTCCTCTGTTCACAAACTACCTCTGGACAGTTGTGTTGTTTTTG
TTCAATGTTTCATTCTTAGACATCCGTCATTGCTGCTGCTACCAGCGCCAAATGTTCATC
CTCATCGCCTCCTGTTCTGCCCACATTCTCCTCCCCCAAGACCCTCTTAGGGGAAGGGGC
CTGGGGCAAAGCAGGCTGGGTCACAGACCACCCCGGTCCCAGGGAAGGTGGGGCCCTGCC
CCTAGGATGCTGCAGCAGAGTAAGGAGGGGGGCCTGTGTTGACTGTCAGGTGTAGGGGCC
GCCTTCTCCCCGTTCTGTCAGGGAGGAGGCAGCCGATATTTGTCCCAGCCTGGGGGCCCC
CCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAATGTCCTTTTCTGGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCTCTGGGGGGCGCAGGAAGGCAGGCAGGAGGGGTTTAAGCCCCCTACCCTGTCTAA
GCAGGCTCCAGCCCACCCTCCCCCCCCCCCCCCGGAATCTACTGCAGTGATGGAAGTGCA
GAGTCACCTTTATCCAGGGGAGGCCCAGGTTCCCGGGGCAGCCACTGAGGGTGGGCTCGA
GTCCCTCCCAGTCCCTGTCCGCTTCTAGGCCTCCGTTTCTTCCCCTTCCCTCACGGGGCA
CTAATAACAAGGAGCTAGCCTTGCCCACTCCCACCCTTCTGCTCCTCCCCCGCCCCCCAA
GGTTCTGGTTCCATCTTTCCTCTGTTCACAAACTACCTCTGGACAGTTGTGTTGTTTTTG
TTCAATGTTTCATTCTTAGACATCCGTCATTGCTGCTGCTACCAGCGCCAAATGTTCATC
CTCATCGCCTCCTGTTCTGCCCACATTCTCCTCCCCCAAGACCCTCTTAGGGGAAGGGGC
CTGGGGCAAAGCAGGCTGGGTCACAGACCACCCCGGTCCCAGGGAAGGTGGGGCCCTGCC
CCTAGGATGCTGCAGCAGAGTAAGGAGGGGGGCCTGTGTTGACTGTCAGGTGTAGGGGCC
GCCTTCTCCCCGTTCTGTCAGGGAGGAGGCAGCCGATATTTGTCCCAGCCTGGGGGCCCC
CCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAATGTCCTTTTCTGGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-115, - strand, RNAz p=0.663731
               

               
               406-561, - strand, RNAz p=0.995768

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-115, - strand, RNAz p=0.663731
               

               
               406-561, - strand, RNAz p=0.995768

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               463-541, + strand, RNAmicro p=0.999882
               

               
               468-546, - strand, RNAmicro p=0.999389

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               463-541, + strand, RNAmicro p=0.999882
               

               
               468-546, - strand, RNAmicro p=0.999389

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-571, gnl|bosTau2|chr23 (7986611-7987185)
               

               
               3-571, gnl|Hg17|chr6 (34321264-34321841)
               

               
               3-571, gnl|Mm7|chr17 (25748651-25749156)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-571, gnl|bosTau2|chr23 (7986611-7987185)
               

               
               3-571, gnl|Hg17|chr6 (34321264-34321841)
               

               
               3-571, gnl|Mm7|chr17 (25748651-25749156)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ece (0.45861)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               ecc (0.23007)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	3-115, - strand, RNAz p=0.663731
	406-561, - strand, RNAz p=0.995768

	463-541, + strand, RNAmicro p=0.999882
	468-546, - strand, RNAmicro p=0.999389

	3-571, gnl\|bosTau2\|chr23 (7986611-7987185)
	3-571, gnl\|Hg17\|chr6 (34321264-34321841)
	3-571, gnl\|Mm7\|chr17 (25748651-25749156)

	ece (0.45861)
	elu (0.385356)
	fty (0.351679)
	ill (0.351185)
	ton (0.351)
	cga (0.279096)
	ecc (0.23007)
	mcp (0.170648)
	nco (0.161734)
	cag (0.151194)
	pty (0.142714)
	cst (0.140036)
	nmm (0.132802)
	cly (0.120642)
	nbm (0.0993246)
	jej (0.0989218)