Ss1.1-Pig4-TMW8026C11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACCCGCACTTAACTTCCGCGGTTGCCGGCGGCGTCCAAGAGCCGAGACACAGCCTCTG AGTTACCGGGTACCTTCTATTGGGTCAGCGGCGTGAGAATACTGCCCACGGCGTGTCGTC CGCGCCGCCCGGCCAGCCGGTCAAGTTCCCGTCCTTGTCCCCCGGCTGGTCCGGGGTTCC GGCACCGCCGCGTTGGCGGCCCCGCCGGACGCGCGGACGGGGCCGCAGCCCGCACCCCAA ACGAACGGCGTCATGAGGAACCTGCCGTACTTCTGCCGTGGCCAAGTGGTGCGGGGCTTT GGCCGCGGCTCCAAGCAGTTGGGTATCCCTACAGCTAACTTTCCTGAACAAGTAGTAGAT AATCTTCCAGCCGATGTATCCACTGGCATTTATTATGGTTGGGCCAGTGTTGGAAGTGGA GATGTCCATAAGATGGTGGTGAGCATAGGATGGAACCCATACTACAAGAATACAAAAAAG TCCATGGAAACTCATATCATGCATACCTTCAAAGAGGACTTCTATGGGGAAATCCTCAAT GTGGCCATCGTTGGCTACCTCAGACCAGAAAAGAACTTTGATTCTTTAGAGTCCCTTATT TCAGCAATTCAAGGTGATATTGAGGAAGCTAAGAAACAACTAGATTTACCAGAACATTTG AAACTCAAAGAAGACAATTTCTTCCAGGTTTCTAAAAGCAAAATAATGAATGGCCACTGA TGGAAAATTATCTTATTTATTCATTCACTGTTTTCTAATATTTTACTGCTCATAAGTCTG CAGTCTCATCTTGGTGATATTTTAAAAATCAAACATTTTCCTACAGCTGTGAATTAAACA GTACAGTGTAGTTACCATATTATGTTTCAACTGTTCAATTAAATCCATCATGTTACACTA CTAAAAATGTTCATTTTAAAAATCAAGATTCTTTTTTATGAAATGTGTTGATTAAAATGT ACCACTAGAAGGGTCTTAAGTGTCTTATAATGGAAATGAAACGTGTATAAATGTGTGTAA GAAGGCAAGTCACTCGTTTTGAGATGAGAACTGCAATTCTCATGGTAAAATTTTAGCATG TGTGTGCTGTGGTACACCATGCTCAGCTCACCAGAATGCTTAGTTATAAAAGTAATTGGT AAACAGAGGTTTGGCAGTTTGTTACAAACCTGACGGAAAACAACCCAGACTTCGTATTTT TGATATTTTGTGCATTTACGTTATAGACATGAAGACTTGTGAAATTCCCTTTTAATTAGT CATTTCCTAATTTAAGGGCTTGAATCATCGTACTGTGTTACATTTTTGTTATAGCTGCCT TAGTTCTAATTGGTCTAGACTCTGCCTGTTATTTCTTTTTCTTTCAAAACAGTAAAATCA GTGTTTCTTAGATCTCTAGATCTCATTTTTATGTTGTATAACACTTCTCTCTTTTTAAGC ATAGATTATTCTGCAACATTTTCTTGACCTTTTTTTTTTTTCTGTAAACAGTTTTCAGTG TCAGTTTTTCCATTTAGACTGTCCTGCAACCATCTGCATTTACATAGGACTGCATCTGTA TCTGTATCTGTCATTCCATCCTTTCACTGTATGAACAGTGATTAAGTGCATATCTGTATT GCATTTTAGGAAAACACCCTAAAACTTCATCTTTAGGTTTCCTTAAAGTTTAAAAAAAAA AAAAATAGCAGTTCATCTATATATACAAGTTTCTTAAAGAACACAAAATACACAAAAACT ATTTAAAAGCCAACTATGAAATAGAAAGTTATTTATTTTAATGTGATTTTATGTTCCTGA GCACATACAAACCATTGTATGTGTGCGCACAATGTTATTTAATGCTAAAGAGGGCAGGTA GCTGGGTGGGGGTGGGGGGCTATAAATAATAAAGTTTTAATTTAATAAATGGTCATGCTG GCATTTTTTCCTCTTCCATTAACTTAAGAAGTGGAGAGTTCCCCTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACCCGCACTTAACTTCCGCGGTTGCCGGCGGCGTCCAAGAGCCGAGACACAGCCTCTG AGTTACCGGGTACCTTCTATTGGGTCAGCGGCGTGAGAATACTGCCCACGGCGTGTCGTC CGCGCCGCCCGGCCAGCCGGTCAAGTTCCCGTCCTTGTCCCCCGGCTGGTCCGGGGTTCC GGCACCGCCGCGTTGGCGGCCCCGCCGGACGCGCGGACGGGGCCGCAGCCCGCACCCCAA ACGAACGGCGTCATGAGGAACCTGCCGTACTTCTGCCGTGGCCAAGTGGTGCGGGGCTTT GGCCGCGGCTCCAAGCAGTTGGGTATCCCTACAGCTAACTTTCCTGAACAAGTAGTAGAT AATCTTCCAGCCGATGTATCCACTGGCATTTATTATGGTTGGGCCAGTGTTGGAAGTGGA GATGTCCATAAGATGGTGGTGAGCATAGGATGGAACCCATACTACAAGAATACAAAAAAG TCCATGGAAACTCATATCATGCATACCTTCAAAGAGGACTTCTATGGGGAAATCCTCAAT GTGGCCATCGTTGGCTACCTCAGACCAGAAAAGAACTTTGATTCTTTAGAGTCCCTTATT TCAGCAATTCAAGGTGATATTGAGGAAGCTAAGAAACAACTAGATTTACCAGAACATTTG AAACTCAAAGAAGACAATTTCTTCCAGGTTTCTAAAAGCAAAATAATGAATGGCCACTGA TGGAAAATTATCTTATTTATTCATTCACTGTTTTCTAATATTTTACTGCTCATAAGTCTG CAGTCTCATCTTGGTGATATTTTAAAAATCAAACATTTTCCTACAGCTGTGAATTAAACA GTACAGTGTAGTTACCATATTATGTTTCAACTGTTCAATTAAATCCATCATGTTACACTA CTAAAAATGTTCATTTTAAAAATCAAGATTCTTTTTTATGAAATGTGTTGATTAAAATGT ACCACTAGAAGGGTCTTAAGTGTCTTATAATGGAAATGAAACGTGTATAAATGTGTGTAA GAAGGCAAGTCACTCGTTTTGAGATGAGAACTGCAATTCTCATGGTAAAATTTTAGCATG TGTGTGCTGTGGTACACCATGCTCAGCTCACCAGAATGCTTAGTTATAAAAGTAATTGGT AAACAGAGGTTTGGCAGTTTGTTACAAACCTGACGGAAAACAACCCAGACTTCGTATTTT TGATATTTTGTGCATTTACGTTATAGACATGAAGACTTGTGAAATTCCCTTTTAATTAGT CATTTCCTAATTTAAGGGCTTGAATCATCGTACTGTGTTACATTTTTGTTATAGCTGCCT TAGTTCTAATTGGTCTAGACTCTGCCTGTTATTTCTTTTTCTTTCAAAACAGTAAAATCA GTGTTTCTTAGATCTCTAGATCTCATTTTTATGTTGTATAACACTTCTCTCTTTTTAAGC ATAGATTATTCTGCAACATTTTCTTGACCTTTTTTTTTTTTCTGTAAACAGTTTTCAGTG TCAGTTTTTCCATTTAGACTGTCCTGCAACCATCTGCATTTACATAGGACTGCATCTGTA TCTGTATCTGTCATTCCATCCTTTCACTGTATGAACAGTGATTAAGTGCATATCTGTATT GCATTTTAGGAAAACACCCTAAAACTTCATCTTTAGGTTTCCTTAAAGTTTAAAAAAAAA AAAAATAGCAGTTCATCTATATATACAAGTTTCTTAAAGAACACAAAATACACAAAAACT ATTTAAAAGCCAACTATGAAATAGAAAGTTATTTATTTTAATGTGATTTTATGTTCCTGA GCACATACAAACCATTGTATGTGTGCGCACAATGTTATTTAATGCTAAAGAGGGCAGGTA GCTGGGTGGGGGTGGGGGGCTATAAATAATAAAGTTTTAATTTAATAAATGGTCATGCTG GCATTTTTTCCTCTTCCATTAACTTAAGAAGTGGAGAGTTCCCCTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1019-1136, - strand, RNAz p=0.927608 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1019-1136, - strand, RNAz p=0.927608 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 125-334, gnl|bosTau2|chr8 (24690491-24690701) | |
| 125-334, gnl|canFam2|chr1 (85131617-85131434) | |
| 125-334, gnl|canFam2|chr1 (85131617-85131424) | |
| 125-334, gnl|canFam2|chr1 (85131617-85131428) | |
| 125-334, gnl|dasNov1|scaffold_172713 (4193-4387) | |
| 125-334, gnl|dasNov1|scaffold_172713 (4193-4383) | |
| 125-334, gnl|dasNov1|scaffold_28761 (41321-41130) | |
| 125-334, gnl|echTel1|scaffold_164223 (646-440) | |
| 125-334, gnl|echTel1|scaffold_315163 (132615-132801) | |
| 125-334, gnl|echTel1|scaffold_315163 (132615-132804) | |
| 125-334, gnl|hg17|chr4 (141879254-141879443) | |
| 125-334, gnl|hg17|chr6 (85732962-85733146) | |
| 125-334, gnl|Hg17|chr9 (76238763-76238560) | |
| 125-334, gnl|hg17|chrX (88043420-88043608) | |
| 125-334, gnl|loxAfr1|scaffold_23788 (40400-40213) | |
| 125-334, gnl|loxAfr1|scaffold_23788 (40400-40212) | |
| 125-334, gnl|loxAfr1|scaffold_80851 (261-445) | |
| 125-334, gnl|mm7|chr19 (17095319-17095134) | |
| 125-334, gnl|mm7|chr19 (17095319-17095130) | |
| 125-334, gnl|mm7|chr19 (17095319-17095129) | |
| 125-334, gnl|Mm7|chr19 (17095124-17095320) | |
| 125-334, gnl|monDom2|scaffold_115 (446266-446076) | |
| 125-334, gnl|monDom2|scaffold_43 (6428265-6428457) | |
| 125-334, gnl|monDom2|scaffold_43 (6428265-6428457) | |
| 125-334, gnl|oryCun1|scaffold_209070 (48542-48737) | |
| 125-334, gnl|oryCun1|scaffold_209070 (48542-48743) | |
| 125-334, gnl|oryCun1|scaffold_84330 (2031-2218) | |
| 125-334, gnl|panTro1|chr3 (159139988-159140177) | |
| 125-334, gnl|panTro1|chr5 (87443426-87443610) | |
| 125-334, gnl|panTro1|chrX (90768975-90769162) | |
| 125-334, gnl|rheMac2|chr2 (40072247-40072057) | |
| 125-334, gnl|rheMac2|chr4 (80975489-80975673) | |
| 125-334, gnl|rheMac2|chrX (87680359-87680594) | |
| 125-334, gnl|rn3|chr3 (85242632-85242819) | |
| 125-334, gnl|rn3|chr3 (85242632-85242823) | |
| 125-334, gnl|rn3|chrX (96702426-96702235) | |
| 588-1717, gnl|bosTau2|chr8 (24694683-24695785) | |
| 588-1717, gnl|Hg17|chr9 (76232001-76230900) | |
| 1752-1935, gnl|bosTau2|chr8 (24695844-24696022) | |
| 1752-1935, gnl|canFam2|chr1 (85139226-85138998) | |
| 1752-1935, gnl|canFam2|chr1 (85139190-85138987) | |
| 1752-1935, gnl|dasNov1|scaffold_2213 (55698-55929) | |
| 1752-1935, gnl|dasNov1|scaffold_3769 (2085-1882) | |
| 1752-1935, gnl|echTel1|scaffold_246441 (249-458) | |
| 1752-1935, gnl|echTel1|scaffold_91734 (525-726) | |
| 1752-1935, gnl|hg17|chr3 (113231173-113231407) | |
| 1752-1935, gnl|hg17|chr9 (76230666-76230877) | |
| 1752-1935, gnl|Hg17|chr9 (76230851-76230669) | |
| 1752-1935, gnl|loxAfr1|scaffold_18420 (33253-33016) | |
| 1752-1935, gnl|loxAfr1|scaffold_18420 (33220-33003) | |
| 1752-1935, gnl|mm7|chr19 (17101611-17101466) | |
| 1752-1935, gnl|mm7|chrX (31381599-31381397) | |
| 1752-1935, gnl|monDom2|scaffold_115 (448748-448522) | |
| 1752-1935, gnl|monDom2|scaffold_17 (10283955-10283726) | |
| 1752-1935, gnl|oryCun1|scaffold_209070 (46318-46538) | |
| 1752-1935, gnl|oryCun1|scaffold_209070 (46342-46545) | |
| 1752-1935, gnl|panTro1|chr11 (60111628-60111839) | |
| 1752-1935, gnl|panTro1|chr2 (114820628-114820862) | |
| 1752-1935, gnl|rheMac2|chr15 (85141720-85141936) | |
| 1752-1935, gnl|rheMac2|chr2 (32129416-32129649) | |
| 1752-1935, gnl|rn3|chr1 (221095685-221095522) | |
| 1752-1935, gnl|rn3|chrX (8253584-8253805) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-334, gnl|bosTau2|chr8 (24690491-24690701) | |
| 125-334, gnl|canFam2|chr1 (85131617-85131434) | |
| 125-334, gnl|canFam2|chr1 (85131617-85131424) | |
| 125-334, gnl|canFam2|chr1 (85131617-85131428) | |
| 125-334, gnl|dasNov1|scaffold_172713 (4193-4387) | |
| 125-334, gnl|dasNov1|scaffold_172713 (4193-4383) | |
| 125-334, gnl|dasNov1|scaffold_28761 (41321-41130) | |
| 125-334, gnl|echTel1|scaffold_164223 (646-440) | |
| 125-334, gnl|echTel1|scaffold_315163 (132615-132801) | |
| 125-334, gnl|echTel1|scaffold_315163 (132615-132804) | |
| 125-334, gnl|hg17|chr4 (141879254-141879443) | |
| 125-334, gnl|hg17|chr6 (85732962-85733146) | |
| 125-334, gnl|Hg17|chr9 (76238763-76238560) | |
| 125-334, gnl|hg17|chrX (88043420-88043608) | |
| 125-334, gnl|loxAfr1|scaffold_23788 (40400-40213) | |
| 125-334, gnl|loxAfr1|scaffold_23788 (40400-40212) | |
| 125-334, gnl|loxAfr1|scaffold_80851 (261-445) | |
| 125-334, gnl|mm7|chr19 (17095319-17095134) | |
| 125-334, gnl|mm7|chr19 (17095319-17095130) | |
| 125-334, gnl|mm7|chr19 (17095319-17095129) | |
| 125-334, gnl|Mm7|chr19 (17095124-17095320) | |
| 125-334, gnl|monDom2|scaffold_115 (446266-446076) | |
| 125-334, gnl|monDom2|scaffold_43 (6428265-6428457) | |
| 125-334, gnl|monDom2|scaffold_43 (6428265-6428457) | |
| 125-334, gnl|oryCun1|scaffold_209070 (48542-48737) | |
| 125-334, gnl|oryCun1|scaffold_209070 (48542-48743) | |
| 125-334, gnl|oryCun1|scaffold_84330 (2031-2218) | |
| 125-334, gnl|panTro1|chr3 (159139988-159140177) | |
| 125-334, gnl|panTro1|chr5 (87443426-87443610) | |
| 125-334, gnl|panTro1|chrX (90768975-90769162) | |
| 125-334, gnl|rheMac2|chr2 (40072247-40072057) | |
| 125-334, gnl|rheMac2|chr4 (80975489-80975673) | |
| 125-334, gnl|rheMac2|chrX (87680359-87680594) | |
| 125-334, gnl|rn3|chr3 (85242632-85242819) | |
| 125-334, gnl|rn3|chr3 (85242632-85242823) | |
| 125-334, gnl|rn3|chrX (96702426-96702235) | |
| 588-1717, gnl|bosTau2|chr8 (24694683-24695785) | |
| 588-1717, gnl|Hg17|chr9 (76232001-76230900) | |
| 1752-1935, gnl|bosTau2|chr8 (24695844-24696022) | |
| 1752-1935, gnl|canFam2|chr1 (85139226-85138998) | |
| 1752-1935, gnl|canFam2|chr1 (85139190-85138987) | |
| 1752-1935, gnl|dasNov1|scaffold_2213 (55698-55929) | |
| 1752-1935, gnl|dasNov1|scaffold_3769 (2085-1882) | |
| 1752-1935, gnl|echTel1|scaffold_246441 (249-458) | |
| 1752-1935, gnl|echTel1|scaffold_91734 (525-726) | |
| 1752-1935, gnl|hg17|chr3 (113231173-113231407) | |
| 1752-1935, gnl|hg17|chr9 (76230666-76230877) | |
| 1752-1935, gnl|Hg17|chr9 (76230851-76230669) | |
| 1752-1935, gnl|loxAfr1|scaffold_18420 (33253-33016) | |
| 1752-1935, gnl|loxAfr1|scaffold_18420 (33220-33003) | |
| 1752-1935, gnl|mm7|chr19 (17101611-17101466) | |
| 1752-1935, gnl|mm7|chrX (31381599-31381397) | |
| 1752-1935, gnl|monDom2|scaffold_115 (448748-448522) | |
| 1752-1935, gnl|monDom2|scaffold_17 (10283955-10283726) | |
| 1752-1935, gnl|oryCun1|scaffold_209070 (46318-46538) | |
| 1752-1935, gnl|oryCun1|scaffold_209070 (46342-46545) | |
| 1752-1935, gnl|panTro1|chr11 (60111628-60111839) | |
| 1752-1935, gnl|panTro1|chr2 (114820628-114820862) | |
| 1752-1935, gnl|rheMac2|chr15 (85141720-85141936) | |
| 1752-1935, gnl|rheMac2|chr2 (32129416-32129649) | |
| 1752-1935, gnl|rn3|chr1 (221095685-221095522) | |
| 1752-1935, gnl|rn3|chrX (8253584-8253805) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| sto (0.359648) | |
| jej (0.296765) | |
| lin (0.291206) | |
| lnt (0.284616) | |
| tes (0.207814) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cut (0.169924) | |
| mga (0.160205) | |
| fat (0.147427) | |
| pla (0.133672) | |
| sug (0.127291) | |
| tra (0.123092) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.359648) | |
| jej (0.296765) | |
| lin (0.291206) | |
| lnt (0.284616) | |
| tes (0.207814) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cut (0.169924) | |
| mga (0.160205) | |
| fat (0.147427) | |
| pla (0.133672) | |
| sug (0.127291) | |
| tra (0.123092) | |
| med (0.116252) | |
| cty (0.10408) |