Non-Coding RNA Search

Ss1.1-Pig4-TMW8026C14.3

Sequence:


               
               CTTCCTTCACCTCTCCGTTCCTCTTTTCGCCTGCCCTCCCTGCCTGCTGTCCTTTCGTGG
CCCAAATCACGTGCTGGAGCCCGCACTTGCCGCACGGCGCTCGGCTGGGAAGCTGCACGG
GAGTCCGGGCCTGAGAGCCGTGGTGCTTGGCCTCCTCCCGCCGCATTCCCGGGCCCACCT
CTAGGCTGCGCTGATTGGCGGCTTCTGGGCCATCCCCCCCGCTCTGAGCAGATAGAGTAC
TCTGCCCAGCGGAAAGTTTATTGCGCCGGGAGGAAGTTGGACATTTAGAGACTCTTGAGA
AGGCAGCTACGGAGGCTGCAGAGGTCTGGCAGGCCATGGAGGAGCCCCCTTTGCGAGAGG
AGGAGGAGGAAGGGGACGAGGCGGGGCCCGAGGGGGCTCTGGGCAAGAGCCCCTTCCAGC
TGACAGCCGAAGACGTATATGACATCTCTTACGTGATGGGCCGAGAGCTGATGGCCCTGG
GCAGCGACCCCCGGGTGACACAGCTGCAGTTCAAGATCGTCCGTGTTCTGGAGATGCTGG
AGACGCTGGTGAATGAGGGCAACTTGACGGTGGAGGAGCTGAGAATGGAGCGGGACAACC
TCAGGACGGAGGTGGAGGGGCTGCGGAGAGAGGGCTCCGCGGCCGGCGGAGAGGTGAACC
TGGGACCAGACAAAATGGTGGTTGACCTGACAGATCCCAACCGACCACGCTTTACTCTGC
AGGAGCTGAGGGATGTGCTACAGGAGCGCAACAAACTCAAGTCGCAGCTGCTGGTGGCAC
AGGAGGAGCTGCAGTGCTATAAGAGTGGCCTGATTCCACCAAGAGAAGGCCCAGGAGGAA
GAAGAGAAAAAGATACTCTGGTTGCTCGGGCCAACAATGCCAGGAGTAACAAGGAGGAGA
AGACAATCATAAGGAAGCTGTTCTCTTTCGGATCAGGGAAGCAGACATAGATCTGAGGCC
ACGACTAAATTCTCAGACTCAGAAAACAGCTCACAAAGACAACTTCCAAAATCATCTCTC
AGTGCCACGCGTACCCACTGCACATGCTGCTTTGTTTCTCCTCAAAGCTGTCTGAGGAGG
AAGGGGAAACGTTTTCTCCCTAGCTGCAGAACTGGACACCCTTGAAGGCTGGGCCAGAGC
AGATGAAGTGACACAAAGAAAACAGAACGAAAGTGCCAGGGGGCCCACCTGCAGCCCCAC
TTCAACCACCCAGGGGGCCTCCAGAATGCAGATGCACGTTCTGCTTCTCCTGGCCCATGG
ATGACCCAGGTTCTTACTGTGCAGCAGCGGCATATGCCAGCCCAAAGTGGGTGGGGAGAA
GAAAATGCAGGAAAACAAGGAATTGACACTCCAGTGATGCCTTCACTGATATTTAGTGAA
TATTTGATTTTGCTAACACAACTTTCTTTACATGACTTTGAATTAAAGTAGAAAAACTTT
TTATACTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTTCACCTCTCCGTTCCTCTTTTCGCCTGCCCTCCCTGCCTGCTGTCCTTTCGTGG
CCCAAATCACGTGCTGGAGCCCGCACTTGCCGCACGGCGCTCGGCTGGGAAGCTGCACGG
GAGTCCGGGCCTGAGAGCCGTGGTGCTTGGCCTCCTCCCGCCGCATTCCCGGGCCCACCT
CTAGGCTGCGCTGATTGGCGGCTTCTGGGCCATCCCCCCCGCTCTGAGCAGATAGAGTAC
TCTGCCCAGCGGAAAGTTTATTGCGCCGGGAGGAAGTTGGACATTTAGAGACTCTTGAGA
AGGCAGCTACGGAGGCTGCAGAGGTCTGGCAGGCCATGGAGGAGCCCCCTTTGCGAGAGG
AGGAGGAGGAAGGGGACGAGGCGGGGCCCGAGGGGGCTCTGGGCAAGAGCCCCTTCCAGC
TGACAGCCGAAGACGTATATGACATCTCTTACGTGATGGGCCGAGAGCTGATGGCCCTGG
GCAGCGACCCCCGGGTGACACAGCTGCAGTTCAAGATCGTCCGTGTTCTGGAGATGCTGG
AGACGCTGGTGAATGAGGGCAACTTGACGGTGGAGGAGCTGAGAATGGAGCGGGACAACC
TCAGGACGGAGGTGGAGGGGCTGCGGAGAGAGGGCTCCGCGGCCGGCGGAGAGGTGAACC
TGGGACCAGACAAAATGGTGGTTGACCTGACAGATCCCAACCGACCACGCTTTACTCTGC
AGGAGCTGAGGGATGTGCTACAGGAGCGCAACAAACTCAAGTCGCAGCTGCTGGTGGCAC
AGGAGGAGCTGCAGTGCTATAAGAGTGGCCTGATTCCACCAAGAGAAGGCCCAGGAGGAA
GAAGAGAAAAAGATACTCTGGTTGCTCGGGCCAACAATGCCAGGAGTAACAAGGAGGAGA
AGACAATCATAAGGAAGCTGTTCTCTTTCGGATCAGGGAAGCAGACATAGATCTGAGGCC
ACGACTAAATTCTCAGACTCAGAAAACAGCTCACAAAGACAACTTCCAAAATCATCTCTC
AGTGCCACGCGTACCCACTGCACATGCTGCTTTGTTTCTCCTCAAAGCTGTCTGAGGAGG
AAGGGGAAACGTTTTCTCCCTAGCTGCAGAACTGGACACCCTTGAAGGCTGGGCCAGAGC
AGATGAAGTGACACAAAGAAAACAGAACGAAAGTGCCAGGGGGCCCACCTGCAGCCCCAC
TTCAACCACCCAGGGGGCCTCCAGAATGCAGATGCACGTTCTGCTTCTCCTGGCCCATGG
ATGACCCAGGTTCTTACTGTGCAGCAGCGGCATATGCCAGCCCAAAGTGGGTGGGGAGAA
GAAAATGCAGGAAAACAAGGAATTGACACTCCAGTGATGCCTTCACTGATATTTAGTGAA
TATTTGATTTTGCTAACACAACTTTCTTTACATGACTTTGAATTAAAGTAGAAAAACTTT
TTATACTCCCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61858092|ref|XP_612562.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61858092|ref|XP_612562.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               164-271, - strand, RNAz p=0.974019
               

               
               311-409, - strand, RNAz p=0.993699

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-271, - strand, RNAz p=0.974019
               

               
               311-409, - strand, RNAz p=0.993699

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-657, gnl|bosTau2|chr17 (26469771-26469105)
               

               
               6-657, gnl|Hg17|chr12 (122446142-122445505)
               

               
               6-657, gnl|Mm7|chr5 (123724198-123723639)
               


               
               920-1441, gnl|bosTau2|chr17 (26443627-26443109)
               

               
               920-1441, gnl|Hg17|chr12 (122425348-122424824)
               

               
               920-1441, gnl|Mm7|chr5 (123709674-123709184)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-657, gnl|bosTau2|chr17 (26469771-26469105)
               

               
               6-657, gnl|Hg17|chr12 (122446142-122445505)
               

               
               6-657, gnl|Mm7|chr5 (123724198-123723639)
               


               
               920-1441, gnl|bosTau2|chr17 (26443627-26443109)
               

               
               920-1441, gnl|Hg17|chr12 (122425348-122424824)
               

               
               920-1441, gnl|Mm7|chr5 (123709674-123709184)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cki (0.495704)
               

               
               hea (0.408998)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               hea (0.408998)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	164-271, - strand, RNAz p=0.974019
	311-409, - strand, RNAz p=0.993699

	6-657, gnl\|bosTau2\|chr17 (26469771-26469105)
	6-657, gnl\|Hg17\|chr12 (122446142-122445505)
	6-657, gnl\|Mm7\|chr5 (123724198-123723639)

	920-1441, gnl\|bosTau2\|chr17 (26443627-26443109)
	920-1441, gnl\|Hg17\|chr12 (122425348-122424824)
	920-1441, gnl\|Mm7\|chr5 (123709674-123709184)

	cki (0.495704)
	hea (0.408998)
	csp (0.322373)
	cag (0.302389)
	cty (0.20816)
	sin (0.174948)
	cut (0.169924)
	cst (0.140036)
	hlv (0.139256)
	med (0.116252)
	cbl (0.114797)
	eje (0.0988338)