Non-Coding RNA Search

Ss1.1-Pig4-TMW8026C18.3

Sequence:


               
               ACTTCTACTACACGGAGCTGGACGTGGGTGTGGACTCGCTGACCGCGGGGCTGTCCAGCC
TGAGCCCGGTGTCACCCAGCACCTGTGTGCCACCCGCCTTCCCCTGCCTGGCGCTGCCGG
AGCCCCCCGCCCTGCCCCGCCTGCTGCGCCCGCTGGCCCTGCCCCCACCCCCGGTGCTCA
GCGCCTCGGCGCCCCCCCAGGTGTGCCACAGTGACCACGCCTACCAGGGCTGCCTGGCAC
CCGCCCACCTGGAGCCACGGCCGACCACAGTCAGGGCCTGCGCGCCAGCCCTGCCCGCCA
AGCTTGGTCCCACCCCGAGGAAGCCCCGAGGGGATGCCAAGAAGTGCCGGAAGGTGTATG
GCATGGAGCGCCGGGACCTCTGGTGCAGGGCCTGCCGCTGGAAGAAGGCCTGCCGGCGCT
TCCTGGACTGAGCCCGCCGCCTGCCCGGGGCCTCGCCCACTTGCAGACTCTTCTCTTGGA
TGGGGGTCCCCACCACTCAAAGTGCCTCTGAAGAAACCAGCCTTTTGCACTAAAGCCAAA
CCTCACTGCTGTCCCCTTGGCCTGGGGTCCCCAGGGGTGGCCGCCCCCGCCTGTTGGCCC
CGGACTTGTCAGGGGTGTGATGGGCCCCGCTTTGGGGCCACAAGGGGTTGTCCTCGATGC
ACTTTGAGGGGCGTCAGGGAGGGGCACCCCCGCCTGACATTTGAGGCCGGGGTGGCATTC
GTACCGCGTTTGCGAAGCTCAGGTGTCTCACGTCTGGGCTGAACCAGGCGAGGAGTAAAA
TTAAAGATTTGGGGTTTTTCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCTACTACACGGAGCTGGACGTGGGTGTGGACTCGCTGACCGCGGGGCTGTCCAGCC
TGAGCCCGGTGTCACCCAGCACCTGTGTGCCACCCGCCTTCCCCTGCCTGGCGCTGCCGG
AGCCCCCCGCCCTGCCCCGCCTGCTGCGCCCGCTGGCCCTGCCCCCACCCCCGGTGCTCA
GCGCCTCGGCGCCCCCCCAGGTGTGCCACAGTGACCACGCCTACCAGGGCTGCCTGGCAC
CCGCCCACCTGGAGCCACGGCCGACCACAGTCAGGGCCTGCGCGCCAGCCCTGCCCGCCA
AGCTTGGTCCCACCCCGAGGAAGCCCCGAGGGGATGCCAAGAAGTGCCGGAAGGTGTATG
GCATGGAGCGCCGGGACCTCTGGTGCAGGGCCTGCCGCTGGAAGAAGGCCTGCCGGCGCT
TCCTGGACTGAGCCCGCCGCCTGCCCGGGGCCTCGCCCACTTGCAGACTCTTCTCTTGGA
TGGGGGTCCCCACCACTCAAAGTGCCTCTGAAGAAACCAGCCTTTTGCACTAAAGCCAAA
CCTCACTGCTGTCCCCTTGGCCTGGGGTCCCCAGGGGTGGCCGCCCCCGCCTGTTGGCCC
CGGACTTGTCAGGGGTGTGATGGGCCCCGCTTTGGGGCCACAAGGGGTTGTCCTCGATGC
ACTTTGAGGGGCGTCAGGGAGGGGCACCCCCGCCTGACATTTGAGGCCGGGGTGGCATTC
GTACCGCGTTTGCGAAGCTCAGGTGTCTCACGTCTGGGCTGAACCAGGCGAGGAGTAAAA
TTAAAGATTTGGGGTTTTTCCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6F6I7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6F6I7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               347-443, + strand, RNAz p=0.574388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-443, + strand, RNAz p=0.574388

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020062, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020062, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-228, gnl|bosTau2|chr13 (35319718-35319491)
               

               
               1-228, gnl|Hg17|chr20 (61844171-61844413)
               

               
               1-228, gnl|Mm7|chr2 (181887513-181887759)
               


               
               313-805, gnl|bosTau2|chr13 (35319259-35318783)
               

               
               313-805, gnl|Hg17|chr20 (61844667-61845302)
               

               
               313-805, gnl|Mm7|chr2 (181887998-181888535)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr13 (35319718-35319491)
               

               
               1-228, gnl|Hg17|chr20 (61844171-61844413)
               

               
               1-228, gnl|Mm7|chr2 (181887513-181887759)
               


               
               313-805, gnl|bosTau2|chr13 (35319259-35318783)
               

               
               313-805, gnl|Hg17|chr20 (61844667-61845302)
               

               
               313-805, gnl|Mm7|chr2 (181887998-181888535)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

	1-228, gnl\|bosTau2\|chr13 (35319718-35319491)
	1-228, gnl\|Hg17\|chr20 (61844171-61844413)
	1-228, gnl\|Mm7\|chr2 (181887513-181887759)

	313-805, gnl\|bosTau2\|chr13 (35319259-35318783)
	313-805, gnl\|Hg17\|chr20 (61844667-61845302)
	313-805, gnl\|Mm7\|chr2 (181887998-181888535)

	nms (0.213858)
	eje (0.197668)
	col (0.195008)
	cli (0.152812)
	lnt (0.142308)
	ese (0.126502)