Non-Coding RNA Search

Ss1.1-Pig4-TMW8026C20.3

Sequence:


               
               TTTAAATGTAGTTATTTTGGTATTTAATTTTTTTTAAAGAGAGGGGAAAAAACCCTGTAT
TTTCCTGGTGGAATGAAACGGCTCAGAATGGTATATTTAGGCAATTTTAAAACATTTATT
ATTTACCTAAAGACCAAATATGATAAATCTGTTCTCAGTATTGTGTGTCAATCCACGGTA
TGGAGCTGTCACAATGTTATTGCAGACGATGCGTATTAAAAATTATGAAATGACTGCACA
CTAGCTGGATTTATAACTCAGCCATCTCAGAAATAAAACAAAACCATCATGTCAACTCCA
GACCACGTGTGTGACAGTGGCAAAGCCTCGCTTGCAGACTGCAGCACGGACGGGTCCGAG
TGCCTCAGGCAGCAGCCTGCCTCCCAGGCACTTTCCAGAGACCTTGGAATGTACGTTTGT
GTTTCTCTTTTGACTCAGAAGGTTTGCAGTCGGCAAAATCATTCAGATCACGCTGTGTCC
GCGTGTGAGGTTGGGTGGCTTCACTGATGGCCGCTGGAGCCCCTGACCGTGAGTTCTGGG
GAGGGAGGTGGACGGGGCCCCCCGCGGGCAGATGGCCTGGCCCGTGCTCCTAGGAGACAC
GTCCCACCACCGTCGCCTGCAGGCGCCGCCTGTCGGTGGGTGATGCCGAGCCCGTGTGTA
GATTGTGTGGGTCTGGGGGCTCCCTGGTGGGCTCGTGGGTCGGAAGAGCGCCCGTCCTCA
GAGCCCAAGAAGAGGAGGACAGGCTGCGTTGTCAGGCGCTAACGCGCGCCCTTGTCACAG
GTGAGGCGGTCTCTTTGCTGCTCCTCCGTCTTGTTCAGTCGGCTTACTCACTGGCACATA
GAAATCTCAGAATGCCAGGGAGAGGGCAGAAAACCCCACAGATTAACAAACCACCACACC
ACAGGCACTTTTTATGTTTGAATTTAGCCCGGAAGTCCCAGGAGCCCTGTGGCCCCCGAG
CCCTGGGAGAAACAGCTGGTTCCCGTGGCCCCGGGGGAAGCCTGGTGCTGCAGAGGTCAC
GTCGCACTGGACCCTGCCCAGCCGCGCACGGCTGTTCCTAAGCGCCTCACTGCAGGCAGT
GTCTGCTCTGACCTTTGCCAAACGTCTGCGCTCCCTCAGGGACAAGAAACTTCATTTCAG
CAGCTTCGCCCTGAACCCGACAAGACGCAAAAGGGGGACTCACGCGGGAGGCGAGTGACG
CGGCTCCTCCCGGGTTCGTGCGCGGACTGAGCTTCCTCTCGAGTCGGGGGGTCTCCACTC
GGACAGTTGAGCTCTCCGGACACGTCACCCCTCGCACCGTCCCCTCCCAGGACGACAGAG
TAGGCCAGAGTCACGGTCAGAGGGTGGGGCCGTGTCAGGACTTGGGATTTCTGTGCTTTG
TGACACAAGGAGACAAGTGACAATCTTCGGGTCCTAACCTCCACTATTCTATAAGGTATA
GTGGTGATCTGTGTGCAAAGATTTGAAATTTTAAACGTACCAAGTTCCTGAAACTCAATA
AAATATTTTTATTAATTTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAATGTAGTTATTTTGGTATTTAATTTTTTTTAAAGAGAGGGGAAAAAACCCTGTAT
TTTCCTGGTGGAATGAAACGGCTCAGAATGGTATATTTAGGCAATTTTAAAACATTTATT
ATTTACCTAAAGACCAAATATGATAAATCTGTTCTCAGTATTGTGTGTCAATCCACGGTA
TGGAGCTGTCACAATGTTATTGCAGACGATGCGTATTAAAAATTATGAAATGACTGCACA
CTAGCTGGATTTATAACTCAGCCATCTCAGAAATAAAACAAAACCATCATGTCAACTCCA
GACCACGTGTGTGACAGTGGCAAAGCCTCGCTTGCAGACTGCAGCACGGACGGGTCCGAG
TGCCTCAGGCAGCAGCCTGCCTCCCAGGCACTTTCCAGAGACCTTGGAATGTACGTTTGT
GTTTCTCTTTTGACTCAGAAGGTTTGCAGTCGGCAAAATCATTCAGATCACGCTGTGTCC
GCGTGTGAGGTTGGGTGGCTTCACTGATGGCCGCTGGAGCCCCTGACCGTGAGTTCTGGG
GAGGGAGGTGGACGGGGCCCCCCGCGGGCAGATGGCCTGGCCCGTGCTCCTAGGAGACAC
GTCCCACCACCGTCGCCTGCAGGCGCCGCCTGTCGGTGGGTGATGCCGAGCCCGTGTGTA
GATTGTGTGGGTCTGGGGGCTCCCTGGTGGGCTCGTGGGTCGGAAGAGCGCCCGTCCTCA
GAGCCCAAGAAGAGGAGGACAGGCTGCGTTGTCAGGCGCTAACGCGCGCCCTTGTCACAG
GTGAGGCGGTCTCTTTGCTGCTCCTCCGTCTTGTTCAGTCGGCTTACTCACTGGCACATA
GAAATCTCAGAATGCCAGGGAGAGGGCAGAAAACCCCACAGATTAACAAACCACCACACC
ACAGGCACTTTTTATGTTTGAATTTAGCCCGGAAGTCCCAGGAGCCCTGTGGCCCCCGAG
CCCTGGGAGAAACAGCTGGTTCCCGTGGCCCCGGGGGAAGCCTGGTGCTGCAGAGGTCAC
GTCGCACTGGACCCTGCCCAGCCGCGCACGGCTGTTCCTAAGCGCCTCACTGCAGGCAGT
GTCTGCTCTGACCTTTGCCAAACGTCTGCGCTCCCTCAGGGACAAGAAACTTCATTTCAG
CAGCTTCGCCCTGAACCCGACAAGACGCAAAAGGGGGACTCACGCGGGAGGCGAGTGACG
CGGCTCCTCCCGGGTTCGTGCGCGGACTGAGCTTCCTCTCGAGTCGGGGGGTCTCCACTC
GGACAGTTGAGCTCTCCGGACACGTCACCCCTCGCACCGTCCCCTCCCAGGACGACAGAG
TAGGCCAGAGTCACGGTCAGAGGGTGGGGCCGTGTCAGGACTTGGGATTTCTGTGCTTTG
TGACACAAGGAGACAAGTGACAATCTTCGGGTCCTAACCTCCACTATTCTATAAGGTATA
GTGGTGATCTGTGTGCAAAGATTTGAAATTTTAAACGTACCAAGTTCCTGAAACTCAATA
AAATATTTTTATTAATTTTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1337-1448, - strand, RNAz p=0.843207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1337-1448, - strand, RNAz p=0.843207

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-480, gnl|bosTau2|chr16 (51586511-51586037)
               

               
               1-480, gnl|Hg17|chr17 (78154056-78154524)
               

               
               1-480, gnl|Mm7|chr11 (121417443-121417842)
               


               
               658-1521, gnl|bosTau2|chr16 (51585750-51584861)
               

               
               658-1521, gnl|Hg17|chr17 (78154794-78155767)
               

               
               658-1521, gnl|Mm7|chr11 (121418040-121418941)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr16 (51586511-51586037)
               

               
               1-480, gnl|Hg17|chr17 (78154056-78154524)
               

               
               1-480, gnl|Mm7|chr11 (121417443-121417842)
               


               
               658-1521, gnl|bosTau2|chr16 (51585750-51584861)
               

               
               658-1521, gnl|Hg17|chr17 (78154794-78155767)
               

               
               658-1521, gnl|Mm7|chr11 (121418040-121418941)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nbm (0.0993246)

	1-480, gnl\|bosTau2\|chr16 (51586511-51586037)
	1-480, gnl\|Hg17\|chr17 (78154056-78154524)
	1-480, gnl\|Mm7\|chr11 (121417443-121417842)

	658-1521, gnl\|bosTau2\|chr16 (51585750-51584861)
	658-1521, gnl\|Hg17\|chr17 (78154794-78155767)
	658-1521, gnl\|Mm7\|chr11 (121418040-121418941)

	elu (0.385356)
	cki (0.165235)
	cag (0.151194)
	lnt (0.142308)
	nbm (0.0993246)