Non-Coding RNA Search

Ss1.1-Pig4-TMW8026C22.5

Sequence:


               
               CTTTGTGCTCATGAGTACAGATGGCTACCAAATGGAGTTAAACTTGCTTTAACTTTGGGG
CCATGAGTTCAAAAACTAGCAAAGCAGCTGTAAGTTGTATATTTGAATTTATTTTTGAAA
AGATTTTGCATAAGCTAAGTATTGGAGAATTTCTTTATTCTTTCGCAACCTACACTGTAA
TTCTGATCATTTCGTTGTCGTATTTTCCAGTGACCTATAACTGACAGACCAGTTGATGGG
CTTTGCGTCCCGTTTAATCCATCGGTGTGTTCACGTCGTGTGGAATGCTCAGAGGCGGCA
CACCAAAAGGAACAGGTGCACAGAAGTGGTCCTCTGGCCTTCTTGGGGAAGGCTCTGATT
CCTGTGTGCTTAGCCCCCATCACCCTTGCTTTTGTCCTCCCTGTGCATTTTGTTTCTGTT
GGCTTAGTTTTTCCTCCATGTCTAACAAGAACACACGTGTTCTTGATGGGTTTCCCACAG
GAGTCTATTGTAAGCTTCCCACTGCGACGTCTAGTCTTTTGAAAATTCTTTAAGCAGCCG
CCTCTCTAACCATCTCCATTGTTAGCCAAACTCTGTCTGCTTTTAGAAACCTTCGTTCCT
GTGAGCAGTGCCTTTGCACATGTGCTAGAGCTCATTGGGGCCAGAACACTCGTGTTCTCT
TCGGTGACATACCACCGCGTCCCTCCTCTCCGGCCGCCACATAGCGAGCCTCACTGCCCC
TGTTGTTCACAGAAGAGGCAGCGATAGCTAAAAATCTCTGTTAAAATCTTATTGCTTCAT
AGAGTGACTTTGGAAAAGATGTTGTTTTCTCTTGAGTCTGTGTAAATATCCCTTTTTTTT
TTTCTCTTCAAATTTTTCTTTGTGTTGAAATTCTAACAGGAATCCTGGGTAGCTGTCCGG
GGTACAGTGAAGTCCAGTGAAAGGCACCTTGTCTATTTTGAAAACAAACATTATGTGACC
TCTGGTAATTCTTTTTCTGTACGAATACTGACTTTCTGGAGTAATGAGTATATCAGTTAT
TGTACATGATTGCTTTGTGAAATGTGCAAATGATATCACCTATGCAGCCTTGTTTGATTT
ATTTCCTCTGGTTTGTACTGTTATTAAAAGCATATTGTATTATAGAGCTATTCAGATATT
TTAAATATAAAGTATTGTTTCCGTAATATAGACGTATGGAATCTATTTAGGTAATAGATG
CATTACTTGGAAAGTTCTGCTTTGACAAACTGACAAAGTCTAAATTAATTAGCAAATGCT
ATATCCCAGGGAGCAGGAAATCAATGGAACATCCCAAGAAGAGGAGAAAGACACTTAAAA
TGGAAACAGTTCCCCTTAAAATCTAGGAATTGGACTTGTTCAGCTGGATATATGTTACCA
GGCGACCCCTCCCGCTTCCCATCTCCAGCCCCTAACCCCCAACTGGAAATTCTTACATTC
AGCTCCTAGGAGTTCTTAATTTACAACTGACTTAGAAGTTTCTCTTGTGGTTTTAGTTTG
GGGGTAACCATCCAGGAAAAGATGCAATGTGGTTTATGCAAACAAAAAAACCTAGCATTA
GTCTTGGCCTCCTCCCTGAGGCGGGCGCAGGGCCTGGCAGTGGGGCCAGGTGGGGCCACC
TCAGTCCCGTCAGGACGCAGTCACGGGCCCCCCCCCCCCATTTCGCTACTGAGTTCAGCA
ACAGTGCAGATTCCACGTTCCCATTCCGCTACTCTCTGAGAAGTGCCTGATGATGTTGAT
GTACTTACAGACACAAGAACAATCTTTGCTATTATTGTATAAAGCCATAAATGTACATAA
ATTATGTTTAAATGGTTTGGTGTCATTCTTTTCTAATTGTGCAGAATAAGCTCCTTATTG
GTAATGATTCTTAATGTTCAGCTGTCATGAAAGTTAAGACCTTGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTGCTCATGAGTACAGATGGCTACCAAATGGAGTTAAACTTGCTTTAACTTTGGGG
CCATGAGTTCAAAAACTAGCAAAGCAGCTGTAAGTTGTATATTTGAATTTATTTTTGAAA
AGATTTTGCATAAGCTAAGTATTGGAGAATTTCTTTATTCTTTCGCAACCTACACTGTAA
TTCTGATCATTTCGTTGTCGTATTTTCCAGTGACCTATAACTGACAGACCAGTTGATGGG
CTTTGCGTCCCGTTTAATCCATCGGTGTGTTCACGTCGTGTGGAATGCTCAGAGGCGGCA
CACCAAAAGGAACAGGTGCACAGAAGTGGTCCTCTGGCCTTCTTGGGGAAGGCTCTGATT
CCTGTGTGCTTAGCCCCCATCACCCTTGCTTTTGTCCTCCCTGTGCATTTTGTTTCTGTT
GGCTTAGTTTTTCCTCCATGTCTAACAAGAACACACGTGTTCTTGATGGGTTTCCCACAG
GAGTCTATTGTAAGCTTCCCACTGCGACGTCTAGTCTTTTGAAAATTCTTTAAGCAGCCG
CCTCTCTAACCATCTCCATTGTTAGCCAAACTCTGTCTGCTTTTAGAAACCTTCGTTCCT
GTGAGCAGTGCCTTTGCACATGTGCTAGAGCTCATTGGGGCCAGAACACTCGTGTTCTCT
TCGGTGACATACCACCGCGTCCCTCCTCTCCGGCCGCCACATAGCGAGCCTCACTGCCCC
TGTTGTTCACAGAAGAGGCAGCGATAGCTAAAAATCTCTGTTAAAATCTTATTGCTTCAT
AGAGTGACTTTGGAAAAGATGTTGTTTTCTCTTGAGTCTGTGTAAATATCCCTTTTTTTT
TTTCTCTTCAAATTTTTCTTTGTGTTGAAATTCTAACAGGAATCCTGGGTAGCTGTCCGG
GGTACAGTGAAGTCCAGTGAAAGGCACCTTGTCTATTTTGAAAACAAACATTATGTGACC
TCTGGTAATTCTTTTTCTGTACGAATACTGACTTTCTGGAGTAATGAGTATATCAGTTAT
TGTACATGATTGCTTTGTGAAATGTGCAAATGATATCACCTATGCAGCCTTGTTTGATTT
ATTTCCTCTGGTTTGTACTGTTATTAAAAGCATATTGTATTATAGAGCTATTCAGATATT
TTAAATATAAAGTATTGTTTCCGTAATATAGACGTATGGAATCTATTTAGGTAATAGATG
CATTACTTGGAAAGTTCTGCTTTGACAAACTGACAAAGTCTAAATTAATTAGCAAATGCT
ATATCCCAGGGAGCAGGAAATCAATGGAACATCCCAAGAAGAGGAGAAAGACACTTAAAA
TGGAAACAGTTCCCCTTAAAATCTAGGAATTGGACTTGTTCAGCTGGATATATGTTACCA
GGCGACCCCTCCCGCTTCCCATCTCCAGCCCCTAACCCCCAACTGGAAATTCTTACATTC
AGCTCCTAGGAGTTCTTAATTTACAACTGACTTAGAAGTTTCTCTTGTGGTTTTAGTTTG
GGGGTAACCATCCAGGAAAAGATGCAATGTGGTTTATGCAAACAAAAAAACCTAGCATTA
GTCTTGGCCTCCTCCCTGAGGCGGGCGCAGGGCCTGGCAGTGGGGCCAGGTGGGGCCACC
TCAGTCCCGTCAGGACGCAGTCACGGGCCCCCCCCCCCCATTTCGCTACTGAGTTCAGCA
ACAGTGCAGATTCCACGTTCCCATTCCGCTACTCTCTGAGAAGTGCCTGATGATGTTGAT
GTACTTACAGACACAAGAACAATCTTTGCTATTATTGTATAAAGCCATAAATGTACATAA
ATTATGTTTAAATGGTTTGGTGTCATTCTTTTCTAATTGTGCAGAATAAGCTCCTTATTG
GTAATGATTCTTAATGTTCAGCTGTCATGAAAGTTAAGACCTTGTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1504-1620, + strand, RNAz p=0.971007

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1504-1620, + strand, RNAz p=0.971007

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002015, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002015, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1406, gnl|bosTau2|chr12 (9369242-9370654)
               

               
               1-1406, gnl|Hg17|chr13 (40029675-40028262)
               

               
               1-1406, gnl|Mm7|chr3 (52474970-52476325)
               


               
               1504-1859, gnl|bosTau2|chr12 (9370674-9371011)
               

               
               1504-1859, gnl|Hg17|chr13 (40028198-40027854)
               

               
               1504-1859, gnl|Mm7|chr3 (52476374-52476674)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1406, gnl|bosTau2|chr12 (9369242-9370654)
               

               
               1-1406, gnl|Hg17|chr13 (40029675-40028262)
               

               
               1-1406, gnl|Mm7|chr3 (52474970-52476325)
               


               
               1504-1859, gnl|bosTau2|chr12 (9370674-9371011)
               

               
               1504-1859, gnl|Hg17|chr13 (40028198-40027854)
               

               
               1504-1859, gnl|Mm7|chr3 (52476374-52476674)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cbl (0.45919)
               

               
               cte (0.29274)
               

               
               mas (0.210305)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               cte (0.29274)
               

               
               mas (0.210305)
               

               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-1406, gnl\|bosTau2\|chr12 (9369242-9370654)
	1-1406, gnl\|Hg17\|chr13 (40029675-40028262)
	1-1406, gnl\|Mm7\|chr3 (52474970-52476325)

	1504-1859, gnl\|bosTau2\|chr12 (9370674-9371011)
	1504-1859, gnl\|Hg17\|chr13 (40028198-40027854)
	1504-1859, gnl\|Mm7\|chr3 (52476374-52476674)

	cbl (0.45919)
	cte (0.29274)
	mas (0.210305)
	eli (0.151814)
	pla (0.133672)
	ret (0.128733)
	tra (0.123092)
	jca (0.11396)
	ldo (0.0970026)