Ss1.1-Pig4-TMW8026C23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATATGTAGGAGATATGTTGGCTTGGCTCCATCAAGCTACTGCTTCTGAGAAGGAACACC TTGAAGCTCTCTTAAAGCATGTAACTGCACAAGGTGTTGAAGAAAATATTCAAGAAGTTG TTGGCCATATCACTGAGGGTGTGTGCAGGCCTCTAAAGGTTCGAATTGAACAAGTAATAG TTGCTGAACCTGGGGCAGTTTTATTATATAAAATTTCTAACCTCCTCAAATTTTACCATC ATACAATCAGCGGCATTGTTGGAAATAGTGCAACTACATTGTTGACTACCATTGAAGAAA TGCATTTGCTGAGCAAAAAAATATTCTTCAATAGCTTGAGTCTTCATGCAAGCAAATTAA TGGACAAGGTTGAACTCCCACCACCTGATCTTGGACCAAGTTCTGCATTAAATCAGACGC TCATGTTGTTGCGTGAAGTTTTGGCATCTCATGATTCCTCAGTTGTACCATTAGATGCCC GTCAAGCTGACTTTGTGCAGGTTTTATCATGTGTCTTGGATCCTCTCCTCCAGATGTGTA CTGTATCAGCCAGCAATTTAGGCACTGCTGACATGGCCACTTTCATGGTCAATTCACTCT ACATGATGAAGACAACATTAGCTCTGTTTGAATTCACTGACAGACGTCTGGAGATGCTGC AGTTCCAGATTGAAGCACATTTGGACACACTTATAAATGAGCAAGCTTCTTATGTTTTAA CTCGAGCAGGCTTGAGTTATATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATATGTAGGAGATATGTTGGCTTGGCTCCATCAAGCTACTGCTTCTGAGAAGGAACACC TTGAAGCTCTCTTAAAGCATGTAACTGCACAAGGTGTTGAAGAAAATATTCAAGAAGTTG TTGGCCATATCACTGAGGGTGTGTGCAGGCCTCTAAAGGTTCGAATTGAACAAGTAATAG TTGCTGAACCTGGGGCAGTTTTATTATATAAAATTTCTAACCTCCTCAAATTTTACCATC ATACAATCAGCGGCATTGTTGGAAATAGTGCAACTACATTGTTGACTACCATTGAAGAAA TGCATTTGCTGAGCAAAAAAATATTCTTCAATAGCTTGAGTCTTCATGCAAGCAAATTAA TGGACAAGGTTGAACTCCCACCACCTGATCTTGGACCAAGTTCTGCATTAAATCAGACGC TCATGTTGTTGCGTGAAGTTTTGGCATCTCATGATTCCTCAGTTGTACCATTAGATGCCC GTCAAGCTGACTTTGTGCAGGTTTTATCATGTGTCTTGGATCCTCTCCTCCAGATGTGTA CTGTATCAGCCAGCAATTTAGGCACTGCTGACATGGCCACTTTCATGGTCAATTCACTCT ACATGATGAAGACAACATTAGCTCTGTTTGAATTCACTGACAGACGTCTGGAGATGCTGC AGTTCCAGATTGAAGCACATTTGGACACACTTATAAATGAGCAAGCTTCTTATGTTTTAA CTCGAGCAGGCTTGAGTTATATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 249-370, - strand, RNAz p=0.883113 | |
| 249-370, - strand, RNAz p=0.99821 | |
| 496-613, + strand, RNAz p=0.966105 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 249-370, - strand, RNAz p=0.883113 | |
| 249-370, - strand, RNAz p=0.99821 | |
| 496-613, + strand, RNAz p=0.966105 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 249-370, gnl|bosTau2|chr12 (12207622-12207743) | |
| 249-370, gnl|canFam2|chr25 (4471081-4470992) | |
| 249-370, gnl|danRer3|chrNA (183211014-183210925) | |
| 249-370, gnl|dasNov1|scaffold_17681 (16617-16706) | |
| 249-370, gnl|echTel1|scaffold_281158 (1461-1372) | |
| 249-370, gnl|fr1|chrUn (54639017-54638928) | |
| 249-370, gnl|galGal2|chr1 (163021627-163021538) | |
| 249-370, gnl|hg17|chr13 (39171633-39171722) | |
| 249-370, gnl|Hg17|chr13 (39171636-39171757) | |
| 249-370, gnl|loxAfr1|scaffold_151098 (1169-1080) | |
| 249-370, gnl|mm7|chr3 (53122721-53122632) | |
| 249-370, gnl|Mm7|chr3 (53122716-53122595) | |
| 249-370, gnl|monDom2|scaffold_15 (52240918-52241007) | |
| 249-370, gnl|oryCun1|scaffold_207177 (46571-46660) | |
| 249-370, gnl|panTro1|chr14 (38545125-38545214) | |
| 249-370, gnl|rheMac2|chr17 (18771910-18771999) | |
| 249-370, gnl|rn3|chr2 (142732795-142732706) | |
| 249-370, gnl|tetNig1|chr16 (5923817-5923906) | |
| 249-370, gnl|xenTro1|scaffold_223 (643565-643654) | |
| 496-671, gnl|bosTau2|chr12 (12217906-12218081) | |
| 496-671, gnl|canFam2|chr25 (4438210-4438007) | |
| 496-671, gnl|danRer3|chrNA (183205543-183205356) | |
| 496-671, gnl|dasNov1|scaffold_8811 (30492-30288) | |
| 496-671, gnl|echTel1|scaffold_285754 (1471-1684) | |
| 496-671, gnl|fr1|chrUn (54638049-54637861) | |
| 496-671, gnl|galGal2|chr1 (163013053-163012859) | |
| 496-671, gnl|hg17|chr13 (39191779-39191983) | |
| 496-671, gnl|Hg17|chr13 (39191791-39191967) | |
| 496-671, gnl|loxAfr1|scaffold_36628 (13882-13673) | |
| 496-671, gnl|mm7|chr3 (53119530-53119327) | |
| 496-671, gnl|Mm7|chr3 (53119516-53119341) | |
| 496-671, gnl|monDom2|scaffold_15 (52264029-52264233) | |
| 496-671, gnl|oryCun1|scaffold_200636 (21307-21103) | |
| 496-671, gnl|panTro1|chr14 (38566756-38566960) | |
| 496-671, gnl|rheMac2|chr17 (18791997-18792201) | |
| 496-671, gnl|rn3|chr2 (142729474-142729274) | |
| 496-671, gnl|tetNig1|chr16 (5924799-5924978) | |
| 496-671, gnl|xenTro1|scaffold_223 (649479-649684) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-370, gnl|bosTau2|chr12 (12207622-12207743) | |
| 249-370, gnl|canFam2|chr25 (4471081-4470992) | |
| 249-370, gnl|danRer3|chrNA (183211014-183210925) | |
| 249-370, gnl|dasNov1|scaffold_17681 (16617-16706) | |
| 249-370, gnl|echTel1|scaffold_281158 (1461-1372) | |
| 249-370, gnl|fr1|chrUn (54639017-54638928) | |
| 249-370, gnl|galGal2|chr1 (163021627-163021538) | |
| 249-370, gnl|hg17|chr13 (39171633-39171722) | |
| 249-370, gnl|Hg17|chr13 (39171636-39171757) | |
| 249-370, gnl|loxAfr1|scaffold_151098 (1169-1080) | |
| 249-370, gnl|mm7|chr3 (53122721-53122632) | |
| 249-370, gnl|Mm7|chr3 (53122716-53122595) | |
| 249-370, gnl|monDom2|scaffold_15 (52240918-52241007) | |
| 249-370, gnl|oryCun1|scaffold_207177 (46571-46660) | |
| 249-370, gnl|panTro1|chr14 (38545125-38545214) | |
| 249-370, gnl|rheMac2|chr17 (18771910-18771999) | |
| 249-370, gnl|rn3|chr2 (142732795-142732706) | |
| 249-370, gnl|tetNig1|chr16 (5923817-5923906) | |
| 249-370, gnl|xenTro1|scaffold_223 (643565-643654) | |
| 496-671, gnl|bosTau2|chr12 (12217906-12218081) | |
| 496-671, gnl|canFam2|chr25 (4438210-4438007) | |
| 496-671, gnl|danRer3|chrNA (183205543-183205356) | |
| 496-671, gnl|dasNov1|scaffold_8811 (30492-30288) | |
| 496-671, gnl|echTel1|scaffold_285754 (1471-1684) | |
| 496-671, gnl|fr1|chrUn (54638049-54637861) | |
| 496-671, gnl|galGal2|chr1 (163013053-163012859) | |
| 496-671, gnl|hg17|chr13 (39191779-39191983) | |
| 496-671, gnl|Hg17|chr13 (39191791-39191967) | |
| 496-671, gnl|loxAfr1|scaffold_36628 (13882-13673) | |
| 496-671, gnl|mm7|chr3 (53119530-53119327) | |
| 496-671, gnl|Mm7|chr3 (53119516-53119341) | |
| 496-671, gnl|monDom2|scaffold_15 (52264029-52264233) | |
| 496-671, gnl|oryCun1|scaffold_200636 (21307-21103) | |
| 496-671, gnl|panTro1|chr14 (38566756-38566960) | |
| 496-671, gnl|rheMac2|chr17 (18791997-18792201) | |
| 496-671, gnl|rn3|chr2 (142729474-142729274) | |
| 496-671, gnl|tetNig1|chr16 (5924799-5924978) | |
| 496-671, gnl|xenTro1|scaffold_223 (649479-649684) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ese (0.126502) | |
| ldo (0.0970026) |