Ss1.1-Pig4-TMW8026C24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCCGGCTCGTCGACTGCGGCGCCGCCAGAGTCTTGAAACCGGGAGTTCCTACTGTGGC GCAGCAGGTTAAGGATCCGGTGTTGTAGTTGCAGTGTAGGTCGAAACTGCAGCTGGGATT CTATCCCTTGCCTCGTCGACTGCGGCGCCGCCAGGAGTTACTGAACGCTCTGAAGACGTC GCTGGATCTCCAGTGAAAAAATCTGTATTTAATCTGTACTGTGGGAAGAAAGGATAGTTG GGTTGCTGGTCTTCCTCCTTGAAGGACACCATGTTTTCCAAACTAGCCCATCTGCAGACC GTCACTCTCCTTCGTCGTGGCGTTCATTCTACAGTGGCTTCTGCGACGTCTGTTGCAACG AAAAGAACCATCCAAGGGCCTCCATCCTCTGATTACATTTTTGAGCGGGAAGCTAAGTAT GGGGCCCACAACTACCATCCTTTACCTGTGGCCCTGGAGAGAGGGAAAGGTGTTTACGTT TGGGATGTAGAAGGCAGGAGATACTTCGACTTCCTGAGTGCCTACAGCGCTGTGAACCAA GGGCACTGCCACCCAAAGATCGTGAACGCTCTGAAACGTCAGGTGGACAAACTGACCCTG ACGTCGAGGGCTTTCTACAATGACGTGCTCGGGGAATACGAAGAGTACATTACGAAGCTT TTCAACTACCACAAGGTCCTGCCTATGAATACAGGGGTGGAGGCTGGAGAGACTGCCTGC AAAATCGCTCGTAGATGGGGCTATACGGTGAAGGGTATCCCAAAATACAAAGCAAAGATC ATTTTTGCAGCTGGAAACTTTTGGGGAAGAACGTTGTCTGCGATCTCCAGTTCCACAGAC CCCACCAGTTACGACGGGTTTGGACCATTTATGCCAGGTTTCGAAATCATTCCATATAGC GATCTGCCTGCTCTCGAGCGCGCGCTTCAGGATCCAAACGTTGCTGCGTTCATGGTAGAG CCAATTCAGGGTGAAGCTGGCGTCGTGGTTCCGGATCCAGGCTACCTCGTGGGCGTGCGC GAGCTCTGCACCCAGCACCAGGTTCTGTTTATTGCTGACGAAATACAAACAGGATTGGCC AGAACTGGTAGATGGCTGGCTGTTGATCATGAAAATGTCAGACCTGATATCATCCTTCTG GGAAAGGCACTTTCTGGTGGCTTATACCCTGTCTCCGCGGTGCTGTGTGATGATGAAATA ATGCTGACCATTAAGCCAGGGGAACATGGGTCAACGTATGGTGGCAATCCCCTGGGCTGC CGAGTGGCCATCGCAGCCCTTGAGGTTTTGGAAGAAGAAAACCTTGCTGAAAATGCCGAG AAGATGGGTACCATCTTGAGAAATGAACTCATGAAGCTCCCTTCTGACATCGTAACGACC GTACGAGGGAAAGGATTACTGAATGCGATTGTTATTAGAGAAACCAAAGATTACGACGCT TGGAAGGTGTGTCTGCGACTTCGAGATAATGGACTTCTGGCCAAGCCAACCCACGGCGAT ATCATCAGATTTGCGCCTCCGCTTGTGATCAAGGAGGATGAGATTCTGGAGTCGGTGGAA ATCATTAACAAGACCGTCTTGTCTTTCTGAGGGCGATGCCAGTGGGCAGCGGCCCCCCGG AGCCAGCTGGAGACAGGCAGGTCGTTGACGTCTTGTAAAAACCTCTGGTTTCTGTGCTTA ATGCAGGCCTAGTCCACTCCCCCGTTTCAAGGGCTTTTTAAAACACATATTTTTTAGTTC ATACATAATAGAATGCCATTTATAAACGTGCACTTTGCTGGGTAACGTAACCAAGAGACT GTCCTGGCATCTATATCTGAGAGTTTTGCGTGTGTGCGTGCGTGCTTGCTGAGGTGAGAA GCAGACTATATAGACACAGCCTTTTCATCAAGCCCTTCAGTGTAAGTTTCATACGATTTT ATAATTTCCTGGCTGGTATAAGTGTTGGTGTTTGAAAAAGTTAGGTGAGGATATTGCAAA GAAGACTTGATTCACCTTATAAAGTTGAATTGCAATCACAGACTTTTAGGAAGGGTTGAT GGTGAAGCTTATATAAAATGCTAGATTTTGAGTAAATTCCAAATTGGCCAACTCCAGGAT GTATTCTATGAATGTCATTTTTTTTGAATTGAGAATTTATGTTTAACATTCCTAGATTAT GTTTTAAGTGTTTTGATATAATTTGTTAAAAGTGTTTATTTTCAGTGTTTCTTTAAATTT AAATAAATCTCATATTTAAAATGTCAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCCGGCTCGTCGACTGCGGCGCCGCCAGAGTCTTGAAACCGGGAGTTCCTACTGTGGC GCAGCAGGTTAAGGATCCGGTGTTGTAGTTGCAGTGTAGGTCGAAACTGCAGCTGGGATT CTATCCCTTGCCTCGTCGACTGCGGCGCCGCCAGGAGTTACTGAACGCTCTGAAGACGTC GCTGGATCTCCAGTGAAAAAATCTGTATTTAATCTGTACTGTGGGAAGAAAGGATAGTTG GGTTGCTGGTCTTCCTCCTTGAAGGACACCATGTTTTCCAAACTAGCCCATCTGCAGACC GTCACTCTCCTTCGTCGTGGCGTTCATTCTACAGTGGCTTCTGCGACGTCTGTTGCAACG AAAAGAACCATCCAAGGGCCTCCATCCTCTGATTACATTTTTGAGCGGGAAGCTAAGTAT GGGGCCCACAACTACCATCCTTTACCTGTGGCCCTGGAGAGAGGGAAAGGTGTTTACGTT TGGGATGTAGAAGGCAGGAGATACTTCGACTTCCTGAGTGCCTACAGCGCTGTGAACCAA GGGCACTGCCACCCAAAGATCGTGAACGCTCTGAAACGTCAGGTGGACAAACTGACCCTG ACGTCGAGGGCTTTCTACAATGACGTGCTCGGGGAATACGAAGAGTACATTACGAAGCTT TTCAACTACCACAAGGTCCTGCCTATGAATACAGGGGTGGAGGCTGGAGAGACTGCCTGC AAAATCGCTCGTAGATGGGGCTATACGGTGAAGGGTATCCCAAAATACAAAGCAAAGATC ATTTTTGCAGCTGGAAACTTTTGGGGAAGAACGTTGTCTGCGATCTCCAGTTCCACAGAC CCCACCAGTTACGACGGGTTTGGACCATTTATGCCAGGTTTCGAAATCATTCCATATAGC GATCTGCCTGCTCTCGAGCGCGCGCTTCAGGATCCAAACGTTGCTGCGTTCATGGTAGAG CCAATTCAGGGTGAAGCTGGCGTCGTGGTTCCGGATCCAGGCTACCTCGTGGGCGTGCGC GAGCTCTGCACCCAGCACCAGGTTCTGTTTATTGCTGACGAAATACAAACAGGATTGGCC AGAACTGGTAGATGGCTGGCTGTTGATCATGAAAATGTCAGACCTGATATCATCCTTCTG GGAAAGGCACTTTCTGGTGGCTTATACCCTGTCTCCGCGGTGCTGTGTGATGATGAAATA ATGCTGACCATTAAGCCAGGGGAACATGGGTCAACGTATGGTGGCAATCCCCTGGGCTGC CGAGTGGCCATCGCAGCCCTTGAGGTTTTGGAAGAAGAAAACCTTGCTGAAAATGCCGAG AAGATGGGTACCATCTTGAGAAATGAACTCATGAAGCTCCCTTCTGACATCGTAACGACC GTACGAGGGAAAGGATTACTGAATGCGATTGTTATTAGAGAAACCAAAGATTACGACGCT TGGAAGGTGTGTCTGCGACTTCGAGATAATGGACTTCTGGCCAAGCCAACCCACGGCGAT ATCATCAGATTTGCGCCTCCGCTTGTGATCAAGGAGGATGAGATTCTGGAGTCGGTGGAA ATCATTAACAAGACCGTCTTGTCTTTCTGAGGGCGATGCCAGTGGGCAGCGGCCCCCCGG AGCCAGCTGGAGACAGGCAGGTCGTTGACGTCTTGTAAAAACCTCTGGTTTCTGTGCTTA ATGCAGGCCTAGTCCACTCCCCCGTTTCAAGGGCTTTTTAAAACACATATTTTTTAGTTC ATACATAATAGAATGCCATTTATAAACGTGCACTTTGCTGGGTAACGTAACCAAGAGACT GTCCTGGCATCTATATCTGAGAGTTTTGCGTGTGTGCGTGCGTGCTTGCTGAGGTGAGAA GCAGACTATATAGACACAGCCTTTTCATCAAGCCCTTCAGTGTAAGTTTCATACGATTTT ATAATTTCCTGGCTGGTATAAGTGTTGGTGTTTGAAAAAGTTAGGTGAGGATATTGCAAA GAAGACTTGATTCACCTTATAAAGTTGAATTGCAATCACAGACTTTTAGGAAGGGTTGAT GGTGAAGCTTATATAAAATGCTAGATTTTGAGTAAATTCCAAATTGGCCAACTCCAGGAT GTATTCTATGAATGTCATTTTTTTTGAATTGAGAATTTATGTTTAACATTCCTAGATTAT GTTTTAAGTGTTTTGATATAATTTGTTAAAAGTGTTTATTTTCAGTGTTTCTTTAAATTT AAATAAATCTCATATTTAAAATGTCAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 241-471, gnl|bosTau2|chr26 (29866004-29865774) | |
| 241-471, gnl|Hg17|chr10 (126090760-126090530) | |
| 241-471, gnl|Mm7|chr7 (128975035-128974798) | |
| 917-1043, gnl|bosTau2|chr26 (29859056-29858930) | |
| 917-1043, gnl|canFam2|chr28 (36770995-36771137) | |
| 917-1043, gnl|canFam2|chr28 (36770997-36771086) | |
| 917-1043, gnl|danRer3|chrNA (32934717-32934586) | |
| 917-1043, gnl|danRer3|chrNA (32934711-32934627) | |
| 917-1043, gnl|dasNov1|scaffold_70487 (3603-3746) | |
| 917-1043, gnl|dasNov1|scaffold_70487 (3605-3694) | |
| 917-1043, gnl|echTel1|scaffold_315327 (179218-179351) | |
| 917-1043, gnl|echTel1|scaffold_315327 (179220-179309) | |
| 917-1043, gnl|fr1|chrUn (25506993-25507136) | |
| 917-1043, gnl|fr1|chrUn (25506999-25507083) | |
| 917-1043, gnl|galGal2|chrUn (24345346-24345497) | |
| 917-1043, gnl|galGal2|chrUn (24334624-24334711) | |
| 917-1043, gnl|hg17|chr10 (126082355-126082498) | |
| 917-1043, gnl|Hg17|chr10 (126082481-126082355) | |
| 917-1043, gnl|hg17|chrX (48062408-48062494) | |
| 917-1043, gnl|loxAfr1|scaffold_9383 (28687-28554) | |
| 917-1043, gnl|loxAfr1|scaffold_9383 (28685-28596) | |
| 917-1043, gnl|mm7|chr7 (128967479-128967624) | |
| 917-1043, gnl|Mm7|chr7 (128967605-128967479) | |
| 917-1043, gnl|mm7|chrX (71302627-71302538) | |
| 917-1043, gnl|monDom2|scaffold_62 (10706150-10706302) | |
| 917-1043, gnl|monDom2|scaffold_62 (10706152-10706241) | |
| 917-1043, gnl|oryCun1|scaffold_157335 (20267-20124) | |
| 917-1043, gnl|oryCun1|scaffold_157335 (20265-20176) | |
| 917-1043, gnl|panTro1|chr8 (128583806-128583949) | |
| 917-1043, gnl|panTro1|chrX (49376660-49376746) | |
| 917-1043, gnl|rheMac2|chr9 (123999741-123999884) | |
| 917-1043, gnl|rheMac2|chrX (46297566-46297650) | |
| 917-1043, gnl|rn3|chr1 (192181921-192182063) | |
| 917-1043, gnl|rn3|chrUn (8347750-8347839) | |
| 917-1043, gnl|tetNig1|chr2_random (1695039-1695160) | |
| 917-1043, gnl|tetNig1|chr2_random (1695049-1695129) | |
| 917-1043, gnl|xenTro1|scaffold_97 (2198285-2198419) | |
| 917-1043, gnl|xenTro1|scaffold_97 (2198290-2198375) | |
| 1283-1429, gnl|bosTau2|chr26 (29856243-29856097) | |
| 1283-1429, gnl|canFam2|chr28 (36767321-36767480) | |
| 1283-1429, gnl|danRer3|chrNA (32941730-32941576) | |
| 1283-1429, gnl|dasNov1|scaffold_70487 (928-1087) | |
| 1283-1429, gnl|echTel1|scaffold_315327 (178852-178992) | |
| 1283-1429, gnl|fr1|chrUn (25505459-25505610) | |
| 1283-1429, gnl|galGal2|chrUn (24331634-24331792) | |
| 1283-1429, gnl|hg17|chr10 (126079389-126079548) | |
| 1283-1429, gnl|Hg17|chr10 (126079545-126079399) | |
| 1283-1429, gnl|loxAfr1|scaffold_9383 (33116-32957) | |
| 1283-1429, gnl|mm7|chr7 (128964539-128964688) | |
| 1283-1429, gnl|Mm7|chr7 (128964685-128964540) | |
| 1283-1429, gnl|monDom2|scaffold_62 (10698436-10698586) | |
| 1283-1429, gnl|oryCun1|scaffold_157335 (22990-22833) | |
| 1283-1429, gnl|panTro1|chr8 (128580842-128581001) | |
| 1283-1429, gnl|rheMac2|chr9 (123996872-123997031) | |
| 1283-1429, gnl|rn3|chr1 (192178966-192179117) | |
| 1283-1429, gnl|tetNig1|chr2_random (1692612-1692763) | |
| 1283-1429, gnl|xenTro1|scaffold_97 (2194853-2195007) | |
| 1677-2255, gnl|bosTau2|chr13 (61668531-61669120) | |
| 1677-2255, gnl|Hg17|chr10 (126076429-126075863) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-471, gnl|bosTau2|chr26 (29866004-29865774) | |
| 241-471, gnl|Hg17|chr10 (126090760-126090530) | |
| 241-471, gnl|Mm7|chr7 (128975035-128974798) | |
| 917-1043, gnl|bosTau2|chr26 (29859056-29858930) | |
| 917-1043, gnl|canFam2|chr28 (36770995-36771137) | |
| 917-1043, gnl|canFam2|chr28 (36770997-36771086) | |
| 917-1043, gnl|danRer3|chrNA (32934717-32934586) | |
| 917-1043, gnl|danRer3|chrNA (32934711-32934627) | |
| 917-1043, gnl|dasNov1|scaffold_70487 (3603-3746) | |
| 917-1043, gnl|dasNov1|scaffold_70487 (3605-3694) | |
| 917-1043, gnl|echTel1|scaffold_315327 (179218-179351) | |
| 917-1043, gnl|echTel1|scaffold_315327 (179220-179309) | |
| 917-1043, gnl|fr1|chrUn (25506993-25507136) | |
| 917-1043, gnl|fr1|chrUn (25506999-25507083) | |
| 917-1043, gnl|galGal2|chrUn (24345346-24345497) | |
| 917-1043, gnl|galGal2|chrUn (24334624-24334711) | |
| 917-1043, gnl|hg17|chr10 (126082355-126082498) | |
| 917-1043, gnl|Hg17|chr10 (126082481-126082355) | |
| 917-1043, gnl|hg17|chrX (48062408-48062494) | |
| 917-1043, gnl|loxAfr1|scaffold_9383 (28687-28554) | |
| 917-1043, gnl|loxAfr1|scaffold_9383 (28685-28596) | |
| 917-1043, gnl|mm7|chr7 (128967479-128967624) | |
| 917-1043, gnl|Mm7|chr7 (128967605-128967479) | |
| 917-1043, gnl|mm7|chrX (71302627-71302538) | |
| 917-1043, gnl|monDom2|scaffold_62 (10706150-10706302) | |
| 917-1043, gnl|monDom2|scaffold_62 (10706152-10706241) | |
| 917-1043, gnl|oryCun1|scaffold_157335 (20267-20124) | |
| 917-1043, gnl|oryCun1|scaffold_157335 (20265-20176) | |
| 917-1043, gnl|panTro1|chr8 (128583806-128583949) | |
| 917-1043, gnl|panTro1|chrX (49376660-49376746) | |
| 917-1043, gnl|rheMac2|chr9 (123999741-123999884) | |
| 917-1043, gnl|rheMac2|chrX (46297566-46297650) | |
| 917-1043, gnl|rn3|chr1 (192181921-192182063) | |
| 917-1043, gnl|rn3|chrUn (8347750-8347839) | |
| 917-1043, gnl|tetNig1|chr2_random (1695039-1695160) | |
| 917-1043, gnl|tetNig1|chr2_random (1695049-1695129) | |
| 917-1043, gnl|xenTro1|scaffold_97 (2198285-2198419) | |
| 917-1043, gnl|xenTro1|scaffold_97 (2198290-2198375) | |
| 1283-1429, gnl|bosTau2|chr26 (29856243-29856097) | |
| 1283-1429, gnl|canFam2|chr28 (36767321-36767480) | |
| 1283-1429, gnl|danRer3|chrNA (32941730-32941576) | |
| 1283-1429, gnl|dasNov1|scaffold_70487 (928-1087) | |
| 1283-1429, gnl|echTel1|scaffold_315327 (178852-178992) | |
| 1283-1429, gnl|fr1|chrUn (25505459-25505610) | |
| 1283-1429, gnl|galGal2|chrUn (24331634-24331792) | |
| 1283-1429, gnl|hg17|chr10 (126079389-126079548) | |
| 1283-1429, gnl|Hg17|chr10 (126079545-126079399) | |
| 1283-1429, gnl|loxAfr1|scaffold_9383 (33116-32957) | |
| 1283-1429, gnl|mm7|chr7 (128964539-128964688) | |
| 1283-1429, gnl|Mm7|chr7 (128964685-128964540) | |
| 1283-1429, gnl|monDom2|scaffold_62 (10698436-10698586) | |
| 1283-1429, gnl|oryCun1|scaffold_157335 (22990-22833) | |
| 1283-1429, gnl|panTro1|chr8 (128580842-128581001) | |
| 1283-1429, gnl|rheMac2|chr9 (123996872-123997031) | |
| 1283-1429, gnl|rn3|chr1 (192178966-192179117) | |
| 1283-1429, gnl|tetNig1|chr2_random (1692612-1692763) | |
| 1283-1429, gnl|xenTro1|scaffold_97 (2194853-2195007) | |
| 1677-2255, gnl|bosTau2|chr13 (61668531-61669120) | |
| 1677-2255, gnl|Hg17|chr10 (126076429-126075863) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| sin (5.42337) | |
| nje (4.47984) | |
| aor (3.12439) | |
| gul (2.30865) | |
| eje (2.17434) | |
| cje (2.14805) | |
| mga (1.76226) | |
| sag (1.64444) | |
| mgm (1.62308) | |
| spc (1.58712) | |
| mgp (1.1534) | |
| ski (1.02715) | |
| liv (0.877706) | |
| fco (0.78604) | |
| ret (0.7724) | |
| tra (0.738552) | |
| cbe (0.717703) | |
| nco (0.646935) | |
| lun (0.601956) | |
| bfe (0.599431) | |
| pro (0.512033) | |
| bla (0.497389) | |
| jej (0.494609) | |
| ctl (0.459207) | |
| isp (0.451128) | |
| fat (0.442282) | |
| csk (0.422238) | |
| cst (0.420109) | |
| tes (0.415628) | |
| sug (0.381874) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| cut (0.339847) | |
| vin (0.332557) | |
| cki (0.330469) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| cte (0.29274) | |
| ste (0.270416) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (5.42337) | |
| nje (4.47984) | |
| aor (3.12439) | |
| gul (2.30865) | |
| eje (2.17434) | |
| cje (2.14805) | |
| mga (1.76226) | |
| sag (1.64444) | |
| mgm (1.62308) | |
| spc (1.58712) | |
| mgp (1.1534) | |
| ski (1.02715) | |
| liv (0.877706) | |
| fco (0.78604) | |
| ret (0.7724) | |
| tra (0.738552) | |
| cbe (0.717703) | |
| nco (0.646935) | |
| lun (0.601956) | |
| bfe (0.599431) | |
| pro (0.512033) | |
| bla (0.497389) | |
| jej (0.494609) | |
| ctl (0.459207) | |
| isp (0.451128) | |
| fat (0.442282) | |
| csk (0.422238) | |
| cst (0.420109) | |
| tes (0.415628) | |
| sug (0.381874) | |
| thg (0.380373) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| cut (0.339847) | |
| vin (0.332557) | |
| cki (0.330469) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| cte (0.29274) | |
| ste (0.270416) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| ill (0.175593) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |