Non-Coding RNA Search

Ss1.1-Pig4-TMW8026D03.3

Sequence:


               
               GAAGATTCAGAGCCTCAGACTTCTAAAGCCTCTTCAACAAGTACACCTGAACCGACAAGA
AAACCCTGGGAAAGAACAAATACAATGAATGGCAGCAAGTCACCTGTTATTTCCAGACGG
GATTCTTCAAGGAAAAATCAGATTACAATGAATGGCAGCAAGTCACCTGTTATTTCCAGA
CCAAAATCCGCACCTTCGTCACAGCCCAGTGCCAATGGAGTCCAGACAGAGGGACTAGAC
TATGACAGGCTGAAGCAGGATATTTTAGATGAAATGAGAAAAGAATTAACAAAGCTAAAA
GAAGAGCTCATTGATGCAATCAGGCAGGAACTGAGCAAGTCAAATACCGCATAGAGAAGC
AAACTAAGGAGAGACAGGACTTGAATCTGGAGAAAGAAAAAAACAACATCTACAAAGAAC
AACTGTTACCAAGAAAACCCCTACATTTCGTGAGCTGAAAGAAGAAAGTGGAGACAAACA
GTCGCGAGGAGGGAAAGACAACATATGCTTGGAAAGCCTTCAGACAGTACTACTCTGGCC
GTAAGCTCCTTCCCTCCCCGTGTGCTGCTGTTTTCTGATGTTTGTGAGAGGACAGAAGAG
AGTCGTGTTAAGAGTTCCTGTAACAGTTACGCAGAAAATACTGACCCCGTCAGGCAAGAA
ATATTTTCCCGTCTCAAGATACAATCACACATTTTCCACAATCCATTGCTCAAATAAAGA
GGAGAAAGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATTCAGAGCCTCAGACTTCTAAAGCCTCTTCAACAAGTACACCTGAACCGACAAGA
AAACCCTGGGAAAGAACAAATACAATGAATGGCAGCAAGTCACCTGTTATTTCCAGACGG
GATTCTTCAAGGAAAAATCAGATTACAATGAATGGCAGCAAGTCACCTGTTATTTCCAGA
CCAAAATCCGCACCTTCGTCACAGCCCAGTGCCAATGGAGTCCAGACAGAGGGACTAGAC
TATGACAGGCTGAAGCAGGATATTTTAGATGAAATGAGAAAAGAATTAACAAAGCTAAAA
GAAGAGCTCATTGATGCAATCAGGCAGGAACTGAGCAAGTCAAATACCGCATAGAGAAGC
AAACTAAGGAGAGACAGGACTTGAATCTGGAGAAAGAAAAAAACAACATCTACAAAGAAC
AACTGTTACCAAGAAAACCCCTACATTTCGTGAGCTGAAAGAAGAAAGTGGAGACAAACA
GTCGCGAGGAGGGAAAGACAACATATGCTTGGAAAGCCTTCAGACAGTACTACTCTGGCC
GTAAGCTCCTTCCCTCCCCGTGTGCTGCTGTTTTCTGATGTTTGTGAGAGGACAGAAGAG
AGTCGTGTTAAGAGTTCCTGTAACAGTTACGCAGAAAATACTGACCCCGTCAGGCAAGAA
ATATTTTCCCGTCTCAAGATACAATCACACATTTTCCACAATCCATTGCTCAAATAAAGA
GGAGAAAGGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34534529|dbj|BAC87036.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34534529|dbj|BAC87036.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr15 (49678048-49678789)
               

               
               1-732, gnl|Hg17|chr3 (192032377-192033041)
               

               
               1-732, gnl|Mm7|chr1 (181901938-181890203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr15 (49678048-49678789)
               

               
               1-732, gnl|Hg17|chr3 (192032377-192033041)
               

               
               1-732, gnl|Mm7|chr1 (181901938-181890203)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               isp (0.300752)
               

               
               ret (0.257467)
               

               
               eye (0.170503)
               

               
               ssp (0.13552)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               ret (0.257467)
               

               
               eye (0.170503)
               

               
               ssp (0.13552)

	1-732, gnl\|bosTau2\|chr15 (49678048-49678789)
	1-732, gnl\|Hg17\|chr3 (192032377-192033041)
	1-732, gnl\|Mm7\|chr1 (181901938-181890203)