Non-Coding RNA Search

Ss1.1-Pig4-TMW8026D14.5

Sequence:


               
               CCAGGCTGCGGTGCCAGGCCTCCAGGTACCCGATCGCCGTGGATTGTTCCTGGACCCTGC
CGCCCACTCCAGCCTCCACCAGGCCCACATCTTTCATTGCCACGTACAGGCTTGGCATGG
CTGCCCATGGGGAGAGCCGGCCCTGCCTCCAGCCCTCACCAGAGGCCACCAGCTGCACCA
TCCCGGATGTCCTGATGTTCTCCATGGTGCCCTATGTGCTCAACGTCACAGCCATCCACC
CCCAAGGCAGCAGCAGCAGCTTGGTGCCCTTTGTCCCAGAACACATCATCAAACCGGACC
CTCCAGAAGGCGTGCGCCAGAGCCCCCTCCCTGGGCAGCAGCTTTGGGTGCAGTGGAAAC
CCCCCCGGTCCTGGCCCTTCCCGGAGATCTTCTCCCTCAAGTACTGGATCCGCTACAAGC
GTCACGGAGCTTCCCGCTTCCGCCAGGTGGGGCCCATTGAAACCACATCCTTCACGCTCA
AGGCTGGGAGGCCCAAAGCCAGGTACTGCATCCAGGTGGCTGCTCAGGACCTCACCGACT
ACGGGGAACCAAGCGCCTGGAGTCTCCCTGCCGCTGACTCTGTGACCCTGGGCAAGTAGT
GGGGGGCTCCCCATACCCCAAAGAGGGGCTGGGCCCTTGCCATCCACCTAAGGGTGAATG
GGACCCATCTGATCTGGGTTGCTGCTGCTGAGTTGCTGAGTGCTGCTGCCGAGTTGCTGA
GCCACCTTGCACAAGTGACTTTGCCTCTCTGAGCCTCAGTTTTTCAATCTGTGAAATGAG
CATGAGCTCCCTCCTTCAACACAGAACAAGGCTTTGGGAACTGTGACCATGAAATGTTTT
TGTTACTTAATTAAAAAAGGATCATTGTCACTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGCTGCGGTGCCAGGCCTCCAGGTACCCGATCGCCGTGGATTGTTCCTGGACCCTGC
CGCCCACTCCAGCCTCCACCAGGCCCACATCTTTCATTGCCACGTACAGGCTTGGCATGG
CTGCCCATGGGGAGAGCCGGCCCTGCCTCCAGCCCTCACCAGAGGCCACCAGCTGCACCA
TCCCGGATGTCCTGATGTTCTCCATGGTGCCCTATGTGCTCAACGTCACAGCCATCCACC
CCCAAGGCAGCAGCAGCAGCTTGGTGCCCTTTGTCCCAGAACACATCATCAAACCGGACC
CTCCAGAAGGCGTGCGCCAGAGCCCCCTCCCTGGGCAGCAGCTTTGGGTGCAGTGGAAAC
CCCCCCGGTCCTGGCCCTTCCCGGAGATCTTCTCCCTCAAGTACTGGATCCGCTACAAGC
GTCACGGAGCTTCCCGCTTCCGCCAGGTGGGGCCCATTGAAACCACATCCTTCACGCTCA
AGGCTGGGAGGCCCAAAGCCAGGTACTGCATCCAGGTGGCTGCTCAGGACCTCACCGACT
ACGGGGAACCAAGCGCCTGGAGTCTCCCTGCCGCTGACTCTGTGACCCTGGGCAAGTAGT
GGGGGGCTCCCCATACCCCAAAGAGGGGCTGGGCCCTTGCCATCCACCTAAGGGTGAATG
GGACCCATCTGATCTGGGTTGCTGCTGCTGAGTTGCTGAGTGCTGCTGCCGAGTTGCTGA
GCCACCTTGCACAAGTGACTTTGCCTCTCTGAGCCTCAGTTTTTCAATCTGTGAAATGAG
CATGAGCTCCCTCCTTCAACACAGAACAAGGCTTTGGGAACTGTGACCATGAAATGTTTT
TGTTACTTAATTAAAAAAGGATCATTGTCACTGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61816776|ref|XP_592852.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61816776|ref|XP_592852.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               563-664, - strand, RNAz p=0.567023

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               563-664, - strand, RNAz p=0.567023

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               104-288, gnl|bosTau2|chr7 (15960552-15960736)
               

               
               104-288, gnl|canFam2|chr20 (58334494-58334207)
               

               
               104-288, gnl|hg17|chr19 (4183985-4184312)
               

               
               104-288, gnl|Hg17|chr19 (4184120-4184304)
               

               
               104-288, gnl|mm7|chr17 (54113721-54114040)
               

               
               104-288, gnl|Mm7|chr17 (54113850-54114033)
               

               
               104-288, gnl|panTro1|chr20 (4463867-4464194)
               

               
               104-288, gnl|rheMac2|chr19 (4091834-4092161)
               

               
               104-288, gnl|rn3|chrUn (25810816-25810571)
               


               
               444-865, gnl|bosTau2|chr7 (15963177-15963573)
               

               
               444-865, gnl|canFam2|chr20 (58329969-58329494)
               

               
               444-865, gnl|echTel1|scaffold_178234 (7306-6848)
               

               
               444-865, gnl|hg17|chr19 (4187873-4188384)
               

               
               444-865, gnl|Hg17|chr19 (4187930-4188372)
               

               
               444-865, gnl|mm7|chr17 (54116116-54116580)
               

               
               444-865, gnl|Mm7|chr17 (54116171-54116549)
               

               
               444-865, gnl|panTro1|chr20 (4467757-4468262)
               

               
               444-865, gnl|rheMac2|chr19 (4096043-4096496)
               

               
               444-865, gnl|rn3|chrUn (25808625-25808164)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-288, gnl|bosTau2|chr7 (15960552-15960736)
               

               
               104-288, gnl|canFam2|chr20 (58334494-58334207)
               

               
               104-288, gnl|hg17|chr19 (4183985-4184312)
               

               
               104-288, gnl|Hg17|chr19 (4184120-4184304)
               

               
               104-288, gnl|mm7|chr17 (54113721-54114040)
               

               
               104-288, gnl|Mm7|chr17 (54113850-54114033)
               

               
               104-288, gnl|panTro1|chr20 (4463867-4464194)
               

               
               104-288, gnl|rheMac2|chr19 (4091834-4092161)
               

               
               104-288, gnl|rn3|chrUn (25810816-25810571)
               


               
               444-865, gnl|bosTau2|chr7 (15963177-15963573)
               

               
               444-865, gnl|canFam2|chr20 (58329969-58329494)
               

               
               444-865, gnl|echTel1|scaffold_178234 (7306-6848)
               

               
               444-865, gnl|hg17|chr19 (4187873-4188384)
               

               
               444-865, gnl|Hg17|chr19 (4187930-4188372)
               

               
               444-865, gnl|mm7|chr17 (54116116-54116580)
               

               
               444-865, gnl|Mm7|chr17 (54116171-54116549)
               

               
               444-865, gnl|panTro1|chr20 (4467757-4468262)
               

               
               444-865, gnl|rheMac2|chr19 (4096043-4096496)
               

               
               444-865, gnl|rn3|chrUn (25808625-25808164)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	104-288, gnl\|bosTau2\|chr7 (15960552-15960736)
	104-288, gnl\|canFam2\|chr20 (58334494-58334207)
	104-288, gnl\|hg17\|chr19 (4183985-4184312)
	104-288, gnl\|Hg17\|chr19 (4184120-4184304)
	104-288, gnl\|mm7\|chr17 (54113721-54114040)
	104-288, gnl\|Mm7\|chr17 (54113850-54114033)
	104-288, gnl\|panTro1\|chr20 (4463867-4464194)
	104-288, gnl\|rheMac2\|chr19 (4091834-4092161)
	104-288, gnl\|rn3\|chrUn (25810816-25810571)

	444-865, gnl\|bosTau2\|chr7 (15963177-15963573)
	444-865, gnl\|canFam2\|chr20 (58329969-58329494)
	444-865, gnl\|echTel1\|scaffold_178234 (7306-6848)
	444-865, gnl\|hg17\|chr19 (4187873-4188384)
	444-865, gnl\|Hg17\|chr19 (4187930-4188372)
	444-865, gnl\|mm7\|chr17 (54116116-54116580)
	444-865, gnl\|Mm7\|chr17 (54116171-54116549)
	444-865, gnl\|panTro1\|chr20 (4467757-4468262)
	444-865, gnl\|rheMac2\|chr19 (4096043-4096496)
	444-865, gnl\|rn3\|chrUn (25808625-25808164)