Ss1.1-Pig4-TMW8026D15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCTCGAGCCGGCCCCGGCCCCGGCCCCGGGGGCAGTCGCGCCAGTGAGCGTCCTGTG CTGTGGCCTCCTGAGGAGCGATGACGGAGTATAAGCTGGTGGTGGTGGGCGCTGGAGGTG TGGGGAAGAGTGCCCTGACCATCCAGCTTATCCAGAACCACTTTGTGGATGAGTACGACC CCACCATAGAGGACTCCTACCGGAAGCAAGTGGTCATTGACGGGGAGACGTGCCTGCTGG ACATCCTGGACACCGCGGGCCAGGAGGAGTACAGTGCCATGCGGGACCAGTACATGCGCA CCGGGGAGGGCTTCCTCTGCGTGTTCGCCATCAACAACACCAAATCTTTCGAGGATATCC ACCAGTACAGGGAGCAGATCAAGCGGGTGAAGGACTCGGACGACGTGCCCATGGTGCTGG TGGGGAACAAGTGTGACCTGGCCGCGCGCACCGTGGAGTCTCGGCAGGCCCAGGACCTCG CTCGCAGCTATGGCATCCCTTACATCGAGACCTCAGCCAAGACCCGACAGGGGGTGGAGG ACGCCTTCTACACGCTGGTGCGCGAGATCCGGCAGCACAAGGTGCGCAAGCTGAGCCCGC CCGACGAGGGCGGCCCCGGCTGCCTGAGCTGCAAGTGCCTGCTCTCCTGACACCGCCGCT GCCCCGTCTGCGGACCTTCTGCGGGGCCTCCATGCAGCTGGGCGCTGGGGCGCAGAGGTG GCGGATGCGGGGAGGAGGCGCACGCGGAGGAAGGAGGAAGGAGGAAGGAAGGAAGTGCCG CCGGCGCCCGGCCAGCCCCGGTCGGCGGCCACAGTGGCCGCAGGCCTCCCAGGACGCTTT GCACGGACTGTCGTGGACTGACGCCACTGGCACCCCAGCTGTCACTCTCCTCCAGCCCCC TCCCCGGCCCGCTGGGCACAGGCTGAATCGCAGTAAATTATTTGATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCTCGAGCCGGCCCCGGCCCCGGCCCCGGGGGCAGTCGCGCCAGTGAGCGTCCTGTG CTGTGGCCTCCTGAGGAGCGATGACGGAGTATAAGCTGGTGGTGGTGGGCGCTGGAGGTG TGGGGAAGAGTGCCCTGACCATCCAGCTTATCCAGAACCACTTTGTGGATGAGTACGACC CCACCATAGAGGACTCCTACCGGAAGCAAGTGGTCATTGACGGGGAGACGTGCCTGCTGG ACATCCTGGACACCGCGGGCCAGGAGGAGTACAGTGCCATGCGGGACCAGTACATGCGCA CCGGGGAGGGCTTCCTCTGCGTGTTCGCCATCAACAACACCAAATCTTTCGAGGATATCC ACCAGTACAGGGAGCAGATCAAGCGGGTGAAGGACTCGGACGACGTGCCCATGGTGCTGG TGGGGAACAAGTGTGACCTGGCCGCGCGCACCGTGGAGTCTCGGCAGGCCCAGGACCTCG CTCGCAGCTATGGCATCCCTTACATCGAGACCTCAGCCAAGACCCGACAGGGGGTGGAGG ACGCCTTCTACACGCTGGTGCGCGAGATCCGGCAGCACAAGGTGCGCAAGCTGAGCCCGC CCGACGAGGGCGGCCCCGGCTGCCTGAGCTGCAAGTGCCTGCTCTCCTGACACCGCCGCT GCCCCGTCTGCGGACCTTCTGCGGGGCCTCCATGCAGCTGGGCGCTGGGGCGCAGAGGTG GCGGATGCGGGGAGGAGGCGCACGCGGAGGAAGGAGGAAGGAGGAAGGAAGGAAGTGCCG CCGGCGCCCGGCCAGCCCCGGTCGGCGGCCACAGTGGCCGCAGGCCTCCCAGGACGCTTT GCACGGACTGTCGTGGACTGACGCCACTGGCACCCCAGCTGTCACTCTCCTCCAGCCCCC TCCCCGGCCCGCTGGGCACAGGCTGAATCGCAGTAAATTATTTGATGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 75-521, gnl|bosTau2|chr8 (47827477-47827930) | |
| 75-521, gnl|canFam2|chr1 (99147934-99147325) | |
| 75-521, gnl|danRer3|chr15 (5161157-5160563) | |
| 75-521, gnl|dasNov1|scaffold_13108 (20446-21055) | |
| 75-521, gnl|echTel1|scaffold_300577 (7263-7872) | |
| 75-521, gnl|fr1|chrUn (284567999-284567314) | |
| 75-521, gnl|galGal2|chrUn (59891848-59892457) | |
| 75-521, gnl|hg17|chr9 (90455064-90455673) | |
| 75-521, gnl|Hg17|chr9 (90455658-90455205) | |
| 75-521, gnl|loxAfr1|scaffold_41391 (9618-9009) | |
| 75-521, gnl|mm7|chr13 (51546042-51546651) | |
| 75-521, gnl|Mm7|chr13 (51546636-51546183) | |
| 75-521, gnl|monDom2|scaffold_27 (1294452-1295061) | |
| 75-521, gnl|oryCun1|scaffold_179803 (136716-137325) | |
| 75-521, gnl|panTro1|chr11 (74639721-74640330) | |
| 75-521, gnl|rheMac2|chr15 (102458028-102458637) | |
| 75-521, gnl|rn3|chr17 (18604656-18604047) | |
| 75-521, gnl|tetNig1|chr10 (8731108-8731785) | |
| 75-521, gnl|xenTro1|scaffold_53 (1555226-1554617) | |
| 87-441, gnl|bosTau2|chr17 (30975133-30975491) | |
| 87-441, gnl|Hg17|chr5 (75505758-75505404) | |
| 87-441, gnl|Mm7|chr10 (117336015-117329944) | |
| 114-432, gnl|bosTau2|chr13 (39626032-39626350) | |
| 531-837, gnl|bosTau2|chr12 (12159203-12158888) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-521, gnl|bosTau2|chr8 (47827477-47827930) | |
| 75-521, gnl|canFam2|chr1 (99147934-99147325) | |
| 75-521, gnl|danRer3|chr15 (5161157-5160563) | |
| 75-521, gnl|dasNov1|scaffold_13108 (20446-21055) | |
| 75-521, gnl|echTel1|scaffold_300577 (7263-7872) | |
| 75-521, gnl|fr1|chrUn (284567999-284567314) | |
| 75-521, gnl|galGal2|chrUn (59891848-59892457) | |
| 75-521, gnl|hg17|chr9 (90455064-90455673) | |
| 75-521, gnl|Hg17|chr9 (90455658-90455205) | |
| 75-521, gnl|loxAfr1|scaffold_41391 (9618-9009) | |
| 75-521, gnl|mm7|chr13 (51546042-51546651) | |
| 75-521, gnl|Mm7|chr13 (51546636-51546183) | |
| 75-521, gnl|monDom2|scaffold_27 (1294452-1295061) | |
| 75-521, gnl|oryCun1|scaffold_179803 (136716-137325) | |
| 75-521, gnl|panTro1|chr11 (74639721-74640330) | |
| 75-521, gnl|rheMac2|chr15 (102458028-102458637) | |
| 75-521, gnl|rn3|chr17 (18604656-18604047) | |
| 75-521, gnl|tetNig1|chr10 (8731108-8731785) | |
| 75-521, gnl|xenTro1|scaffold_53 (1555226-1554617) | |
| 87-441, gnl|bosTau2|chr17 (30975133-30975491) | |
| 87-441, gnl|Hg17|chr5 (75505758-75505404) | |
| 87-441, gnl|Mm7|chr10 (117336015-117329944) | |
| 114-432, gnl|bosTau2|chr13 (39626032-39626350) | |
| 531-837, gnl|bosTau2|chr12 (12159203-12158888) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fbs (0.350693) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.350693) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| pla (0.133672) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) |