Non-Coding RNA Search

Ss1.1-Pig4-TMW8026D21.5

Sequence:


               
               GCGGCTCGAGAGATTGAGAGATGTTTTTGTTTCTTTCTTCGTAAAGGCCTTGGATATTGA
AAAAATAACAAGGCAGAACAGTTGGACAATCTCTCTCTTGAGCCAAATTTAATTATTCTT
ATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGCACCAAAA
GGACAAGTTCCAAGGGGAAGATGAAGCTCCGCCTCCACTGGCTCAGTCCTGCCCGCCAAG
GAAGAAGGGCCGGTGGGGCTTTGCCTGTGCCGTCCACCAAAGGCTGTCACGTGTCTGTAA
ATCAACAGCCCTCCCCTTCCCAACCCCAGGCAGCTTGTGTGTACAATCAGCTTCTTCTAG
CAACTCTATATCTGTTGGCTTCAAGAGAATATTTTGCCTCCACATATGTACCCCTTCTCC
TTTTTTTAAGAGATGGATTTAAACCAAGATGCCTCCAGGAATGAGGACAGAATGAGTATA
TTCGCAGAGGAATCCAAAAAATACAGTTTGGGAGAAAATGCAATAATTTTTGATGAGATG
GGTGAAGGACAAGAAGCGAGTTATGTCAATTATTGTAGATATAATTTTCTGATTAAATCT
GGAAAAAAAGGCAGCCTGTTCTTTCTGCTTTTATTGTATTAACAGCTGAGGTAGCTAAAG
GTATTTAAAATAAAATTAAATTTATGATTCGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGAGATTGAGAGATGTTTTTGTTTCTTTCTTCGTAAAGGCCTTGGATATTGA
AAAAATAACAAGGCAGAACAGTTGGACAATCTCTCTCTTGAGCCAAATTTAATTATTCTT
ATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGCACCAAAA
GGACAAGTTCCAAGGGGAAGATGAAGCTCCGCCTCCACTGGCTCAGTCCTGCCCGCCAAG
GAAGAAGGGCCGGTGGGGCTTTGCCTGTGCCGTCCACCAAAGGCTGTCACGTGTCTGTAA
ATCAACAGCCCTCCCCTTCCCAACCCCAGGCAGCTTGTGTGTACAATCAGCTTCTTCTAG
CAACTCTATATCTGTTGGCTTCAAGAGAATATTTTGCCTCCACATATGTACCCCTTCTCC
TTTTTTTAAGAGATGGATTTAAACCAAGATGCCTCCAGGAATGAGGACAGAATGAGTATA
TTCGCAGAGGAATCCAAAAAATACAGTTTGGGAGAAAATGCAATAATTTTTGATGAGATG
GGTGAAGGACAAGAAGCGAGTTATGTCAATTATTGTAGATATAATTTTCTGATTAAATCT
GGAAAAAAAGGCAGCCTGTTCTTTCTGCTTTTATTGTATTAACAGCTGAGGTAGCTAAAG
GTATTTAAAATAAAATTAAATTTATGATTCGCCAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-690, gnl|bosTau2|chr11 (53518971-53519663)
               

               
               10-690, gnl|Hg17|chr2 (24903080-24903763)
               

               
               10-690, gnl|Mm7|chr12 (4175751-4175073)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-690, gnl|bosTau2|chr11 (53518971-53519663)
               

               
               10-690, gnl|Hg17|chr2 (24903080-24903763)
               

               
               10-690, gnl|Mm7|chr12 (4175751-4175073)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cte (0.29274)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	10-690, gnl\|bosTau2\|chr11 (53518971-53519663)
	10-690, gnl\|Hg17\|chr2 (24903080-24903763)
	10-690, gnl\|Mm7\|chr12 (4175751-4175073)

	cte (0.29274)
	aor (0.195274)
	ill (0.175593)
	sin (0.174948)
	cje (0.165235)
	thg (0.126791)
	cty (0.10408)