Non-Coding RNA Search

Ss1.1-Pig4-TMW8026D22.3

Sequence:


               
               AGTCTGCTGAAAACCAAGTCAATATATTCTTATTCCAAAGAGCTGAAAAAATCAGACCCA
GGAAAGCTTTCAATGTTTTGTTGTTGTTCTTGTTTTTAGTAGTTGTTGTCTCTCGTATTG
TTCTTGTTTTACATAAGAATTATAGGGACTGTGAATACAGAGAGCCCACCTTAACTAGAG
GAGCTTGTTTGATGCAGACCATTGGAGATTGGACATAATCAGAATATCTGGGGTAGTGGA
TATATAACTGGTGGCATATAAAATTCCCTTTAGCCTGGAAGAAAGACAAGGAGGATTTAG
TCGCGTCTTAGCTGCATATTACACGGCAGCTCAAATTCACGACGGCCGTGATGTATAATA
TCATGGTCTGGATCCTTGAGAAGGACATGACTTTATTGTTTGAAAGGTATTTTTTCATGA
GCTAAAAATAATGGTTAGCATGGGGTTAGCAGATGGAACGACTTGAAGTAAGCCATCCAG
TATTCCTAGCACTACAATTTAACCACTTTATTTTGTGTCAGAGAAAGGGGTAAAATGTAA
TAATCATATACCCACCATCTGAATAATGTTGAACTACAAAATGTCCTTGTAATTTTCACA
ACTACTGTCTGATGTTTGAGGATGTTAACTGAAAACATAAATTCCATATCTACCACATTT
ACACCAGCAACAGTATAAAATGTAAGCCTAAATTTGCAAAATTCATAATAATTTAGTGAT
GAAATTTTTTAATAACATGCAGTATATATAAATGCAGATTTTATGCAAGTGTTGACAAAG
TCATTTTTCAGCTTGCAAAATGGGACTACAATATTACATTTTTCACTTCAGCAATTTTTT
ACATCTATGTTGTTGCTTTCTATAATGAATGTGAATGCTGTCTTTTATGAATGCCTTTTT
CATTACAGAAATTTTTGTTTGATGTAATCAATAAACTTTGGTATGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTGCTGAAAACCAAGTCAATATATTCTTATTCCAAAGAGCTGAAAAAATCAGACCCA
GGAAAGCTTTCAATGTTTTGTTGTTGTTCTTGTTTTTAGTAGTTGTTGTCTCTCGTATTG
TTCTTGTTTTACATAAGAATTATAGGGACTGTGAATACAGAGAGCCCACCTTAACTAGAG
GAGCTTGTTTGATGCAGACCATTGGAGATTGGACATAATCAGAATATCTGGGGTAGTGGA
TATATAACTGGTGGCATATAAAATTCCCTTTAGCCTGGAAGAAAGACAAGGAGGATTTAG
TCGCGTCTTAGCTGCATATTACACGGCAGCTCAAATTCACGACGGCCGTGATGTATAATA
TCATGGTCTGGATCCTTGAGAAGGACATGACTTTATTGTTTGAAAGGTATTTTTTCATGA
GCTAAAAATAATGGTTAGCATGGGGTTAGCAGATGGAACGACTTGAAGTAAGCCATCCAG
TATTCCTAGCACTACAATTTAACCACTTTATTTTGTGTCAGAGAAAGGGGTAAAATGTAA
TAATCATATACCCACCATCTGAATAATGTTGAACTACAAAATGTCCTTGTAATTTTCACA
ACTACTGTCTGATGTTTGAGGATGTTAACTGAAAACATAAATTCCATATCTACCACATTT
ACACCAGCAACAGTATAAAATGTAAGCCTAAATTTGCAAAATTCATAATAATTTAGTGAT
GAAATTTTTTAATAACATGCAGTATATATAAATGCAGATTTTATGCAAGTGTTGACAAAG
TCATTTTTCAGCTTGCAAAATGGGACTACAATATTACATTTTTCACTTCAGCAATTTTTT
ACATCTATGTTGTTGCTTTCTATAATGAATGTGAATGCTGTCTTTTATGAATGCCTTTTT
CATTACAGAAATTTTTGTTTGATGTAATCAATAAACTTTGGTATGATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               326-440, - strand, RNAz p=0.736838
               

               
               820-948, + strand, RNAz p=0.927439

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-440, - strand, RNAz p=0.736838
               

               
               820-948, + strand, RNAz p=0.927439

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_173694, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_173694, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-948, gnl|bosTau2|chrX (6708374-6707431)
               

               
               1-948, gnl|Hg17|chrX (138535016-138534034)
               

               
               1-948, gnl|Mm7|chrX (55704925-55703999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chrX (6708374-6707431)
               

               
               1-948, gnl|Hg17|chrX (138535016-138534034)
               

               
               1-948, gnl|Mm7|chrX (55704925-55703999)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

	326-440, - strand, RNAz p=0.736838
	820-948, + strand, RNAz p=0.927439

	1-948, gnl\|bosTau2\|chrX (6708374-6707431)
	1-948, gnl\|Hg17\|chrX (138535016-138534034)
	1-948, gnl\|Mm7\|chrX (55704925-55703999)