Non-Coding RNA Search

Ss1.1-Pig4-TMW8026E20.3

Sequence:


               
               AAGATTCTGAACCCTATGTTGTTGAATAAGTAGAGAAAATCATCCATAAATATTTATTAC
ATTCTGACAGGGTGTATGGCATTGTGTTCTCATAACTATGCCAGAGTGACAGAGTTAATT
CACCCCTTTGGGGGGACTTTAATATTATTTTTAAAGGGATGTGCCTATGCATTAATGCCT
GAAAAATATGTACGAAGAAATGAGGTTGAATCTCTGAGCAGGTTATCTTTCCCTGGAGGT
CAGGGCAGGACACCAACTTCAGGGGCTGTCTCTAGCCCCAAGAATGAATGCTGCCCTCGT
GAGCTCAGATGCTAAGTCATTAGGCAGCATTAAGCTGTTCCCCTGCCACCAAATCAAGTA
GCTTCACCATGTGTCCGCTGGCCCCAAATTATTTTTAACAATCTTAAGAATGAAATGTTT
CGGTGTGTTTTAAAAATGTTCTTTTAAAGAAAGCTTGTGCTCGCTACACTGCTGGTGTGT
GTGTTTTTGAGACCTCTTTATTCAATCTGTGAAGGATATGTGTATTAATCCATACACACA
TAGAGCCTCAATATTTGTCTGAAGACATTTAAATTCTGACCAGTCAAGGAAAGTTCTAGA
AGCAATATTTTCACTTCTTTAACATTCTCCAAATGACATCAAGCATTGATACACACTGAA
GAGTGCATTTATTTTTTGTATCACTCCCAAGTATGTTGGAATATGCAAGGACTGTGGTTA
AAATTAGAATGTATAAGGCATATTATAATTTAGTTCATACTGAGAAATAAATTAACAGAA
CATTGCTTGGTTCAAACTTGTTCCAAAATTTGAGCAATCTCTTGAGTTAGACATAGAAAT
TTTCTATTTTGTTTTAATTTGTCAAGGTATTTTTCTTCCCTTCATGAACTTTAGGTACAC
ATAACTTATGTCATTTATTTATGGTCTTTTATACCTAGTTTGTAAAATTGTAAAATAGCA
AACTAAATGCAAAGAGTTTGCATTTGAAAATAATAAAGTAGTTGCCGTATACAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATTCTGAACCCTATGTTGTTGAATAAGTAGAGAAAATCATCCATAAATATTTATTAC
ATTCTGACAGGGTGTATGGCATTGTGTTCTCATAACTATGCCAGAGTGACAGAGTTAATT
CACCCCTTTGGGGGGACTTTAATATTATTTTTAAAGGGATGTGCCTATGCATTAATGCCT
GAAAAATATGTACGAAGAAATGAGGTTGAATCTCTGAGCAGGTTATCTTTCCCTGGAGGT
CAGGGCAGGACACCAACTTCAGGGGCTGTCTCTAGCCCCAAGAATGAATGCTGCCCTCGT
GAGCTCAGATGCTAAGTCATTAGGCAGCATTAAGCTGTTCCCCTGCCACCAAATCAAGTA
GCTTCACCATGTGTCCGCTGGCCCCAAATTATTTTTAACAATCTTAAGAATGAAATGTTT
CGGTGTGTTTTAAAAATGTTCTTTTAAAGAAAGCTTGTGCTCGCTACACTGCTGGTGTGT
GTGTTTTTGAGACCTCTTTATTCAATCTGTGAAGGATATGTGTATTAATCCATACACACA
TAGAGCCTCAATATTTGTCTGAAGACATTTAAATTCTGACCAGTCAAGGAAAGTTCTAGA
AGCAATATTTTCACTTCTTTAACATTCTCCAAATGACATCAAGCATTGATACACACTGAA
GAGTGCATTTATTTTTTGTATCACTCCCAAGTATGTTGGAATATGCAAGGACTGTGGTTA
AAATTAGAATGTATAAGGCATATTATAATTTAGTTCATACTGAGAAATAAATTAACAGAA
CATTGCTTGGTTCAAACTTGTTCCAAAATTTGAGCAATCTCTTGAGTTAGACATAGAAAT
TTTCTATTTTGTTTTAATTTGTCAAGGTATTTTTCTTCCCTTCATGAACTTTAGGTACAC
ATAACTTATGTCATTTATTTATGGTCTTTTATACCTAGTTTGTAAAATTGTAAAATAGCA
AACTAAATGCAAAGAGTTTGCATTTGAAAATAATAAAGTAGTTGCCGTATACAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               36-190, - strand, RNAz p=0.990494
               

               
               230-329, - strand, RNAz p=0.600849
               

               
               601-719, - strand, RNAz p=0.787414

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-190, - strand, RNAz p=0.990494
               

               
               230-329, - strand, RNAz p=0.600849
               

               
               601-719, - strand, RNAz p=0.787414

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1015, gnl|bosTau2|chr2 (66568907-66569938)
               

               
               1-1015, gnl|Hg17|chr2 (222109280-222108259)
               

               
               1-1015, gnl|Mm7|chr1 (77593791-77592766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1015, gnl|bosTau2|chr2 (66568907-66569938)
               

               
               1-1015, gnl|Hg17|chr2 (222109280-222108259)
               

               
               1-1015, gnl|Mm7|chr1 (77593791-77592766)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

	36-190, - strand, RNAz p=0.990494
	230-329, - strand, RNAz p=0.600849
	601-719, - strand, RNAz p=0.787414

	1-1015, gnl\|bosTau2\|chr2 (66568907-66569938)
	1-1015, gnl\|Hg17\|chr2 (222109280-222108259)
	1-1015, gnl\|Mm7\|chr1 (77593791-77592766)