Non-Coding RNA Search

Ss1.1-Pig4-TMW8026F05.5

Sequence:


               
               GATGAAGATGGCGGCCACCTTAGTAGCTGCTCGGGGAGCCGGGCTGGCACCAGCCTGGGG
GCCTGAGGCCATTACCCCCGACTGGGAAAACCGGGAAGTCTCCACCGGGACCACTATCAT
GGCCGTGCAATTCGATGGGGGCGTGGTTCTAGGAGCCGACTCCAGAACAACCACTGGGTC
CTACATCGCCAATCGAGTGACTGACAAGCTGACTCCTATTCACGACCGTATTTTCTGCTG
CCGCTCAGGCTCAGCAGCTGATACCCAGGCAGTAGCTGATGCAGTCACATATCAGCTTGG
TTTCCACAGCATTGAGCTGAATGAACCTCCGCTGGTGCACACGGCAGCCAGCCTCTTTAA
GGAGATGTGTTACCGATACCGGGAAGACTTGATGGCAGGAATCATCGTTGCGGGCTGGGA
CCCCCAAGAAGGGGGGCAGGTGTACTCAGTGCCCATGGGAGGTATGATGGTGAGACAGGC
CTTTGCCATTGGCGGCTCTGGGAGCTCCTATATCTACGGCTATGTGGATGCTACCTACCG
GGAAGGCATGACCAAGGAAGAGTGTCTGCAGTTCACTGCCAATGCTCTTGCTTTGGCCAT
GGAGCGGGACGGCTCCAGCGGAGGGGTGATCCGCTTAGCAGCCATTGCAGAATCAGGGGT
CGAGCGACAGGTACTTTTGGGAGACCAGATTCCCAAATTCACCATTGCCACTTTACCTCC
TCCCTGAATCTTGGGATTCTAAGCTACAATAAGAGACACCCCCTACTAATGCAAAATTCA
ATAAACAGTTTGTCAGTGAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAAGATGGCGGCCACCTTAGTAGCTGCTCGGGGAGCCGGGCTGGCACCAGCCTGGGG
GCCTGAGGCCATTACCCCCGACTGGGAAAACCGGGAAGTCTCCACCGGGACCACTATCAT
GGCCGTGCAATTCGATGGGGGCGTGGTTCTAGGAGCCGACTCCAGAACAACCACTGGGTC
CTACATCGCCAATCGAGTGACTGACAAGCTGACTCCTATTCACGACCGTATTTTCTGCTG
CCGCTCAGGCTCAGCAGCTGATACCCAGGCAGTAGCTGATGCAGTCACATATCAGCTTGG
TTTCCACAGCATTGAGCTGAATGAACCTCCGCTGGTGCACACGGCAGCCAGCCTCTTTAA
GGAGATGTGTTACCGATACCGGGAAGACTTGATGGCAGGAATCATCGTTGCGGGCTGGGA
CCCCCAAGAAGGGGGGCAGGTGTACTCAGTGCCCATGGGAGGTATGATGGTGAGACAGGC
CTTTGCCATTGGCGGCTCTGGGAGCTCCTATATCTACGGCTATGTGGATGCTACCTACCG
GGAAGGCATGACCAAGGAAGAGTGTCTGCAGTTCACTGCCAATGCTCTTGCTTTGGCCAT
GGAGCGGGACGGCTCCAGCGGAGGGGTGATCCGCTTAGCAGCCATTGCAGAATCAGGGGT
CGAGCGACAGGTACTTTTGGGAGACCAGATTCCCAAATTCACCATTGCCACTTTACCTCC
TCCCTGAATCTTGGGATTCTAAGCTACAATAAGAGACACCCCCTACTAATGCAAAATTCA
ATAAACAGTTTGTCAGTGAGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6IAT9_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6IAT9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               610-769, - strand, RNAz p=0.856025

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-769, - strand, RNAz p=0.856025

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-813, gnl|bosTau2|chr13 (26737037-26736263)
               

               
               1-813, gnl|Hg17|chr17 (4646441-4648748)
               

               
               1-813, gnl|Mm7|chr1 (101267717-101268513)
               


               
               4-810, gnl|bosTau2|chr13 (47256422-47257223)
               

               
               4-810, gnl|Hg17|chr17 (4646444-4648748)
               

               
               4-810, gnl|Mm7|chr1 (101267720-101268510)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-813, gnl|bosTau2|chr13 (26737037-26736263)
               

               
               1-813, gnl|Hg17|chr17 (4646441-4648748)
               

               
               1-813, gnl|Mm7|chr1 (101267717-101268513)
               


               
               4-810, gnl|bosTau2|chr13 (47256422-47257223)
               

               
               4-810, gnl|Hg17|chr17 (4646444-4648748)
               

               
               4-810, gnl|Mm7|chr1 (101267720-101268510)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

Help | Less info


               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               eye (0.682012)
               

               
               nms (0.427716)
               

               
               nmm (0.398406)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               eye (0.682012)
               

               
               nms (0.427716)
               

               
               nmm (0.398406)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               med (0.348756)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               jej (0.296765)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jca (0.11396)

	1-813, gnl\|bosTau2\|chr13 (26737037-26736263)
	1-813, gnl\|Hg17\|chr17 (4646441-4648748)
	1-813, gnl\|Mm7\|chr1 (101267717-101268513)

	4-810, gnl\|bosTau2\|chr13 (47256422-47257223)
	4-810, gnl\|Hg17\|chr17 (4646444-4648748)
	4-810, gnl\|Mm7\|chr1 (101267720-101268510)

	ece (0.687916)
	nca (0.684369)
	eye (0.682012)
	nms (0.427716)
	nmm (0.398406)
	elu (0.385356)
	nep (0.36785)
	eep (0.367692)
	med (0.348756)
	nje (0.33184)
	cje (0.330469)
	jej (0.296765)
	pty (0.285429)
	hlv (0.278513)
	ste (0.270416)
	cbr (0.255951)
	ese (0.253004)
	cly (0.241284)
	eru (0.240096)
	ebs (0.236602)
	ecc (0.23007)
	hea (0.204499)
	fcc (0.197785)
	eje (0.197668)
	ldo (0.194005)
	nlu (0.191681)
	ton (0.1755)
	mcp (0.170648)
	cut (0.169924)
	nco (0.161734)
	csp (0.161186)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	jca (0.11396)