Non-Coding RNA Search

Ss1.1-Pig4-TMW8026F17.5

Sequence:


               
               GGTACAGCCTCTCAGGAGCTGCCTCACTGTAGGGTGGGTAGTCTGTGTTCTTGCTCCTAC
ATGATTGTGGGAGAAAGCGCTGTGTTGTCTTGGAGTCCCTTGGTGATTCAAGGGCTGAAC
CATCCAGCTCCAGATCTCTCTGCTCATCATGCCCTTTCTTGGTGCTGCTTTCTGGGTGGG
ACCCGAAGATAGAGGGTAACTGTTGTCATCAGCTGCCACTTCTGGTCGGGTCTGCCGCAT
TTGTAACATCTGTCCTTTCCCCTGCTTTTACTGGGAACTGAGAATGGTATGGCCTTCTTG
GGTGGTGGTGTGTGGCAGGTTCTCCCGAGCGCCTGTGTGATGACTGTGTTGAGGGTGGGA
TGTGTTAGGAGAGGGCCTGTTTAAGTGTTGACTTGGCTCAGCAGAGTTGAGTTTTTAGGG
GTGCTCGGAATTCTTTCTGTCTTTCTTGGCCTCCCCTGGCTGTGGCTCGGATTCCCTGGT
TGGGCTGTGTGCATTAATGCTGGTGTCGTGACCTAGGGGTCCTCGGGAGCTGCTGGGGTC
TGTCACTGCAGAGTGTGGGGTGTGGGATCGAGGAGGACTATTGTGGGATGGGCCTCGAGG
GGACCAGACAGGTTCAGGTCAAGGGCTGTGGCCTGGAGCCCATGGTGGGAGGACAGAGCA
TGGGGGGCAAGGAGTGTTGTGAGTGCAGTGACCCACTCCGATTAGACACCTGTGAGGACG
GTTTGAGCCAGCTCCTCTGGAAAGTGGGTTCAGGAAATTGCCATCCCGCCAAACTCCTAG
CAGAGAGGTGACTCATTGTTACCTTGAGTCTTTGCTGTACTTCTTGGAATGTTTCTTGGG
AAGAGGGTCGAAAAGTCCCCTTCCCCCATATCACCTTCACACAGTGCAGGCTCGGGGAGA
TGAGGGAGCAGCTTGGATCCTGCTGGGGAGATGCCCTAACCCCAAAAATGACTGATGTGG
CCGAGGAGCCTTTTGCCTTGTTTTCAGTAGCTAATGACCAGAGAGGTTTTTTTTTTAAAC
TACCGTGGTCCCAAGGTTCCATCCTGAAATTTATTTTTCTTTGTATGAATGTGTAAATGA
TTTAAAAAATAAAACTGTGAAATATTTGTATGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACAGCCTCTCAGGAGCTGCCTCACTGTAGGGTGGGTAGTCTGTGTTCTTGCTCCTAC
ATGATTGTGGGAGAAAGCGCTGTGTTGTCTTGGAGTCCCTTGGTGATTCAAGGGCTGAAC
CATCCAGCTCCAGATCTCTCTGCTCATCATGCCCTTTCTTGGTGCTGCTTTCTGGGTGGG
ACCCGAAGATAGAGGGTAACTGTTGTCATCAGCTGCCACTTCTGGTCGGGTCTGCCGCAT
TTGTAACATCTGTCCTTTCCCCTGCTTTTACTGGGAACTGAGAATGGTATGGCCTTCTTG
GGTGGTGGTGTGTGGCAGGTTCTCCCGAGCGCCTGTGTGATGACTGTGTTGAGGGTGGGA
TGTGTTAGGAGAGGGCCTGTTTAAGTGTTGACTTGGCTCAGCAGAGTTGAGTTTTTAGGG
GTGCTCGGAATTCTTTCTGTCTTTCTTGGCCTCCCCTGGCTGTGGCTCGGATTCCCTGGT
TGGGCTGTGTGCATTAATGCTGGTGTCGTGACCTAGGGGTCCTCGGGAGCTGCTGGGGTC
TGTCACTGCAGAGTGTGGGGTGTGGGATCGAGGAGGACTATTGTGGGATGGGCCTCGAGG
GGACCAGACAGGTTCAGGTCAAGGGCTGTGGCCTGGAGCCCATGGTGGGAGGACAGAGCA
TGGGGGGCAAGGAGTGTTGTGAGTGCAGTGACCCACTCCGATTAGACACCTGTGAGGACG
GTTTGAGCCAGCTCCTCTGGAAAGTGGGTTCAGGAAATTGCCATCCCGCCAAACTCCTAG
CAGAGAGGTGACTCATTGTTACCTTGAGTCTTTGCTGTACTTCTTGGAATGTTTCTTGGG
AAGAGGGTCGAAAAGTCCCCTTCCCCCATATCACCTTCACACAGTGCAGGCTCGGGGAGA
TGAGGGAGCAGCTTGGATCCTGCTGGGGAGATGCCCTAACCCCAAAAATGACTGATGTGG
CCGAGGAGCCTTTTGCCTTGTTTTCAGTAGCTAATGACCAGAGAGGTTTTTTTTTTAAAC
TACCGTGGTCCCAAGGTTCCATCCTGAAATTTATTTTTCTTTGTATGAATGTGTAAATGA
TTTAAAAAATAAAACTGTGAAATATTTGTATGAAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-156, - strand, RNAz p=0.98985
               

               
               317-428, + strand, RNAz p=0.656899

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, - strand, RNAz p=0.98985
               

               
               317-428, + strand, RNAz p=0.656899

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000319, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000319, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-825, gnl|bosTau2|chr5 (59962743-59961952)
               

               
               1-825, gnl|Hg17|chr12 (7254196-7255036)
               

               
               1-825, gnl|Mm7|chr6 (124380159-124379399)
               


               
               902-1116, gnl|bosTau2|chr5 (59961928-59961714)
               

               
               902-1116, gnl|canFam2|chr27 (40871961-40871455)
               

               
               902-1116, gnl|dasNov1|scaffold_31136 (10549-11042)
               

               
               902-1116, gnl|echTel1|scaffold_275832 (2082-2564)
               

               
               902-1116, gnl|hg17|chr12 (7254985-7255452)
               

               
               902-1116, gnl|Hg17|chr12 (7255092-7255321)
               

               
               902-1116, gnl|loxAfr1|scaffold_14727 (18384-18879)
               

               
               902-1116, gnl|mm7|chr6 (124379481-124379023)
               

               
               902-1116, gnl|Mm7|chr6 (124379375-124379137)
               

               
               902-1116, gnl|monDom2|scaffold_31 (15803037-15803574)
               

               
               902-1116, gnl|oryCun1|scaffold_179224 (28067-28516)
               

               
               902-1116, gnl|panTro1|chr10 (7818638-7819104)
               

               
               902-1116, gnl|rheMac2|chr11 (7514272-7514756)
               

               
               902-1116, gnl|rn3|chr4 (160812553-160812099)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-825, gnl|bosTau2|chr5 (59962743-59961952)
               

               
               1-825, gnl|Hg17|chr12 (7254196-7255036)
               

               
               1-825, gnl|Mm7|chr6 (124380159-124379399)
               


               
               902-1116, gnl|bosTau2|chr5 (59961928-59961714)
               

               
               902-1116, gnl|canFam2|chr27 (40871961-40871455)
               

               
               902-1116, gnl|dasNov1|scaffold_31136 (10549-11042)
               

               
               902-1116, gnl|echTel1|scaffold_275832 (2082-2564)
               

               
               902-1116, gnl|hg17|chr12 (7254985-7255452)
               

               
               902-1116, gnl|Hg17|chr12 (7255092-7255321)
               

               
               902-1116, gnl|loxAfr1|scaffold_14727 (18384-18879)
               

               
               902-1116, gnl|mm7|chr6 (124379481-124379023)
               

               
               902-1116, gnl|Mm7|chr6 (124379375-124379137)
               

               
               902-1116, gnl|monDom2|scaffold_31 (15803037-15803574)
               

               
               902-1116, gnl|oryCun1|scaffold_179224 (28067-28516)
               

               
               902-1116, gnl|panTro1|chr10 (7818638-7819104)
               

               
               902-1116, gnl|rheMac2|chr11 (7514272-7514756)
               

               
               902-1116, gnl|rn3|chr4 (160812553-160812099)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               isp (0.150376)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               isp (0.150376)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-156, - strand, RNAz p=0.98985
	317-428, + strand, RNAz p=0.656899

	1-825, gnl\|bosTau2\|chr5 (59962743-59961952)
	1-825, gnl\|Hg17\|chr12 (7254196-7255036)
	1-825, gnl\|Mm7\|chr6 (124380159-124379399)

	902-1116, gnl\|bosTau2\|chr5 (59961928-59961714)
	902-1116, gnl\|canFam2\|chr27 (40871961-40871455)
	902-1116, gnl\|dasNov1\|scaffold_31136 (10549-11042)
	902-1116, gnl\|echTel1\|scaffold_275832 (2082-2564)
	902-1116, gnl\|hg17\|chr12 (7254985-7255452)
	902-1116, gnl\|Hg17\|chr12 (7255092-7255321)
	902-1116, gnl\|loxAfr1\|scaffold_14727 (18384-18879)
	902-1116, gnl\|mm7\|chr6 (124379481-124379023)
	902-1116, gnl\|Mm7\|chr6 (124379375-124379137)
	902-1116, gnl\|monDom2\|scaffold_31 (15803037-15803574)
	902-1116, gnl\|oryCun1\|scaffold_179224 (28067-28516)
	902-1116, gnl\|panTro1\|chr10 (7818638-7819104)
	902-1116, gnl\|rheMac2\|chr11 (7514272-7514756)
	902-1116, gnl\|rn3\|chr4 (160812553-160812099)

	ssp (0.271039)
	cov (0.264306)
	isp (0.150376)
	che (0.136314)
	ute (0.132784)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)
	ldo (0.0970026)