Ss1.1-Pig4-TMW8026F18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCCCGCCTGGGCCCGCTGCAGACGAGGACCGCGCTCGCGGATGCGACAGCGGCGCTC GTGGCCCCGGACCCGAAGATCCTTTCAGAATGCCAGAGGAAGGTTCCCCCCGGCGGACCC CACAGAGTGTCCCATACCAGGACATCCCTCACCTGGTCAATGCTGACGGACAGTACCTTT TCTGCAGGTATTGGAAACCCTCAGCTACACCCAGGGCCCTGGTCTTTGTGTCGCACGGAG CCGGGGAGCACTGTGGCCGCTACGAGGAGCTGGCTCGGATGCTGGTAGGGCTGGGGCTGC TGGTGTTCGCCCACGACCATGTTGGCCACGGGCAGAGCGAGGGAGAGAGGATGGTGGTAT CTGACTTCCAGGTGTTCGTCAGGGACGTGTTGCACCACGTGGATGTCATGCAGAAGGACC ACCCACAGCTCCCAGTCTTCCTTCTGGGCCACTCCATGGGAGGTGCCATTGCCATCCTCA CGGCTGCAGAGAGGCCAGGCCACTTCTCCGGCATGGTTCTGATCTCTCCACTGGTTCTTG CCAGTCCTGAGTCTGCAACAACTTTCAAGATCCTTGCTGCGAAAGTGCTCAACCTTGTCC TGCCAAACATGTCCCTGGGCCGGATTGACGCCAGCGTGCTCTCCAGGAATAAAACAGAGG TGGACCTCTACAATGCAGATCCACTTATCTGCCGGGCAGGACTGAAAGTGTGCTTCGGCA TCCAGCTGCTCAACGCCGTTTCACGGGTGGAGCGGGCCCTGCCCAAGCTGACCTTGCCCT TCCTGCTGCTCCAGGGCTCTGCTGACCGCCTGTGCGACAGCAGAGGGGCCTACCTGCTCA TGGAGTCCGCCAAGAGCCAGGACAAGACACTGAAGATTTATGAGGGTGCCTACCACATTC TCCACAAAGAGCTTCCTGAGGTGACCGATTCCGTCTTCCGTGAGATAAATACATGGGTCT CCCAAAGGACAGCGGCTATGGGGACAGGGTCCCCACCCTGAGCGCCATGGCCAGTGGCAG GCCACAGTCAGGGAAGCGGGCAAAGGAGGGGCAGGAGCTGGCTTCTCAGATGTGGCTCGC CAAAAAAACAAAAACCACGAATTAGAGGAATCCCCAGCACAGTTTACTAAAAAACAAAAA ACAAGACAATCCTGTCACATATCAGGCTGTCCGCCTGAATCTGCCTTACGGGGTGGACAT GTGATGCAGAAATAGAAGGTCTCAGACCTCTGAGAGAGCAGAGCCCGCCCCGCCTCCTTT CCGCAGGTCGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCCCGCCTGGGCCCGCTGCAGACGAGGACCGCGCTCGCGGATGCGACAGCGGCGCTC GTGGCCCCGGACCCGAAGATCCTTTCAGAATGCCAGAGGAAGGTTCCCCCCGGCGGACCC CACAGAGTGTCCCATACCAGGACATCCCTCACCTGGTCAATGCTGACGGACAGTACCTTT TCTGCAGGTATTGGAAACCCTCAGCTACACCCAGGGCCCTGGTCTTTGTGTCGCACGGAG CCGGGGAGCACTGTGGCCGCTACGAGGAGCTGGCTCGGATGCTGGTAGGGCTGGGGCTGC TGGTGTTCGCCCACGACCATGTTGGCCACGGGCAGAGCGAGGGAGAGAGGATGGTGGTAT CTGACTTCCAGGTGTTCGTCAGGGACGTGTTGCACCACGTGGATGTCATGCAGAAGGACC ACCCACAGCTCCCAGTCTTCCTTCTGGGCCACTCCATGGGAGGTGCCATTGCCATCCTCA CGGCTGCAGAGAGGCCAGGCCACTTCTCCGGCATGGTTCTGATCTCTCCACTGGTTCTTG CCAGTCCTGAGTCTGCAACAACTTTCAAGATCCTTGCTGCGAAAGTGCTCAACCTTGTCC TGCCAAACATGTCCCTGGGCCGGATTGACGCCAGCGTGCTCTCCAGGAATAAAACAGAGG TGGACCTCTACAATGCAGATCCACTTATCTGCCGGGCAGGACTGAAAGTGTGCTTCGGCA TCCAGCTGCTCAACGCCGTTTCACGGGTGGAGCGGGCCCTGCCCAAGCTGACCTTGCCCT TCCTGCTGCTCCAGGGCTCTGCTGACCGCCTGTGCGACAGCAGAGGGGCCTACCTGCTCA TGGAGTCCGCCAAGAGCCAGGACAAGACACTGAAGATTTATGAGGGTGCCTACCACATTC TCCACAAAGAGCTTCCTGAGGTGACCGATTCCGTCTTCCGTGAGATAAATACATGGGTCT CCCAAAGGACAGCGGCTATGGGGACAGGGTCCCCACCCTGAGCGCCATGGCCAGTGGCAG GCCACAGTCAGGGAAGCGGGCAAAGGAGGGGCAGGAGCTGGCTTCTCAGATGTGGCTCGC CAAAAAAACAAAAACCACGAATTAGAGGAATCCCCAGCACAGTTTACTAAAAAACAAAAA ACAAGACAATCCTGTCACATATCAGGCTGTCCGCCTGAATCTGCCTTACGGGGTGGACAT GTGATGCAGAAATAGAAGGTCTCAGACCTCTGAGAGAGCAGAGCCCGCCCCGCCTCCTTT CCGCAGGTCGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 65-183, + strand, RNAz p=0.541511 | |
| 65-183, - strand, RNAz p=0.541511 | |
| 65-215, + strand, RNAz p=0.85103 | |
| 65-215, - strand, RNAz p=0.85103 | |
| 758-875, - strand, RNAz p=0.588569 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 65-183, + strand, RNAz p=0.541511 | |
| 65-183, - strand, RNAz p=0.541511 | |
| 65-215, + strand, RNAz p=0.85103 | |
| 65-215, - strand, RNAz p=0.85103 | |
| 758-875, - strand, RNAz p=0.588569 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 65-215, gnl|bosTau2|chr22 (46846235-46846385) | |
| 65-215, gnl|canFam2|chr20 (4883511-4883647) | |
| 65-215, gnl|dasNov1|scaffold_170350 (3645-3509) | |
| 65-215, gnl|echTel1|scaffold_116253 (1060-1197) | |
| 65-215, gnl|galGal2|chr12 (9633304-9633168) | |
| 65-215, gnl|hg17|chr3 (129023218-129023354) | |
| 65-215, gnl|Hg17|chr3 (129023385-129023234) | |
| 65-215, gnl|mm7|chr6 (88800957-88800821) | |
| 65-215, gnl|Mm7|chr6 (88800789-88800939) | |
| 65-215, gnl|monDom2|scaffold_5 (46259738-46259874) | |
| 65-215, gnl|panTro1|chr2 (130900893-130901029) | |
| 65-215, gnl|rheMac2|chr11 (87018657-87018521) | |
| 65-215, gnl|rn3|chr4 (123068320-123068184) | |
| 65-215, gnl|tetNig1|chr9 (770737-770616) | |
| 321-459, gnl|bosTau2|chr22 (47675567-47675705) | |
| 321-459, gnl|Hg17|chr3 (128924108-128923970) | |
| 321-459, gnl|Mm7|chr6 (88883103-88883241) | |
| 658-875, gnl|bosTau2|chr22 (47691372-47691589) | |
| 658-875, gnl|canFam2|chr20 (4776431-4776685) | |
| 658-875, gnl|dasNov1|scaffold_233094 (3340-3589) | |
| 658-875, gnl|echTel1|scaffold_280293 (5459-5713) | |
| 658-875, gnl|fr1|chrUn (77267929-77268164) | |
| 658-875, gnl|galGal2|chr12 (9685297-9685040) | |
| 658-875, gnl|hg17|chr3 (128896511-128896765) | |
| 658-875, gnl|Hg17|chr3 (128896733-128896516) | |
| 658-875, gnl|mm7|chr6 (88898506-88898258) | |
| 658-875, gnl|Mm7|chr6 (88898282-88898499) | |
| 658-875, gnl|monDom2|scaffold_5 (46094061-46094330) | |
| 658-875, gnl|panTro1|chr2_random (8647946-8647692) | |
| 658-875, gnl|rheMac2|chr11 (87147843-87147589) | |
| 658-875, gnl|rn3|chr4 (123164833-123164585) | |
| 658-875, gnl|tetNig1|chr9 (782121-781864) | |
| 658-875, gnl|xenTro1|scaffold_72 (665351-665587) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-215, gnl|bosTau2|chr22 (46846235-46846385) | |
| 65-215, gnl|canFam2|chr20 (4883511-4883647) | |
| 65-215, gnl|dasNov1|scaffold_170350 (3645-3509) | |
| 65-215, gnl|echTel1|scaffold_116253 (1060-1197) | |
| 65-215, gnl|galGal2|chr12 (9633304-9633168) | |
| 65-215, gnl|hg17|chr3 (129023218-129023354) | |
| 65-215, gnl|Hg17|chr3 (129023385-129023234) | |
| 65-215, gnl|mm7|chr6 (88800957-88800821) | |
| 65-215, gnl|Mm7|chr6 (88800789-88800939) | |
| 65-215, gnl|monDom2|scaffold_5 (46259738-46259874) | |
| 65-215, gnl|panTro1|chr2 (130900893-130901029) | |
| 65-215, gnl|rheMac2|chr11 (87018657-87018521) | |
| 65-215, gnl|rn3|chr4 (123068320-123068184) | |
| 65-215, gnl|tetNig1|chr9 (770737-770616) | |
| 321-459, gnl|bosTau2|chr22 (47675567-47675705) | |
| 321-459, gnl|Hg17|chr3 (128924108-128923970) | |
| 321-459, gnl|Mm7|chr6 (88883103-88883241) | |
| 658-875, gnl|bosTau2|chr22 (47691372-47691589) | |
| 658-875, gnl|canFam2|chr20 (4776431-4776685) | |
| 658-875, gnl|dasNov1|scaffold_233094 (3340-3589) | |
| 658-875, gnl|echTel1|scaffold_280293 (5459-5713) | |
| 658-875, gnl|fr1|chrUn (77267929-77268164) | |
| 658-875, gnl|galGal2|chr12 (9685297-9685040) | |
| 658-875, gnl|hg17|chr3 (128896511-128896765) | |
| 658-875, gnl|Hg17|chr3 (128896733-128896516) | |
| 658-875, gnl|mm7|chr6 (88898506-88898258) | |
| 658-875, gnl|Mm7|chr6 (88898282-88898499) | |
| 658-875, gnl|monDom2|scaffold_5 (46094061-46094330) | |
| 658-875, gnl|panTro1|chr2_random (8647946-8647692) | |
| 658-875, gnl|rheMac2|chr11 (87147843-87147589) | |
| 658-875, gnl|rn3|chr4 (123164833-123164585) | |
| 658-875, gnl|tetNig1|chr9 (782121-781864) | |
| 658-875, gnl|xenTro1|scaffold_72 (665351-665587) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) |